Wall clock time and date at job start Sat Apr 11 2020 01:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36339 * 125.64010 * 2 1 4 4 C 1.34842 * 108.22527 * 179.97438 * 3 2 1 5 5 C 1.40892 * 107.41285 * 359.77386 * 4 3 2 6 6 C 1.34853 * 107.41922 * 0.37758 * 5 4 3 7 7 C 1.50698 * 125.89046 * 179.88693 * 6 5 4 8 8 H 1.09004 * 109.99851 * 243.59495 * 7 6 5 9 9 C 1.54336 * 109.99164 * 122.55937 * 7 6 5 10 10 C 1.55159 * 103.01741 * 218.66440 * 9 7 6 11 11 C 1.54908 * 101.58447 * 35.30472 * 10 9 7 12 12 N 1.47019 * 109.88452 * 4.68672 * 7 6 5 13 13 C 1.34775 * 125.65199 * 298.39853 * 12 7 6 14 14 O 1.21595 * 119.99750 * 353.84985 * 13 12 7 15 15 C 1.47636 * 120.00350 * 173.85352 * 13 12 7 16 16 C 1.40016 * 119.89588 * 339.49123 * 15 13 12 17 17 C 1.36318 * 120.10890 * 179.97438 * 16 15 13 18 18 C 1.40893 * 119.89107 * 359.97438 * 17 16 15 19 19 C 1.41110 * 120.10252 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00112 * 332.89864 * 19 18 17 21 21 C 1.40229 * 119.99825 * 152.89997 * 19 18 17 22 22 N 1.30651 * 119.99662 * 347.82250 * 21 19 18 23 23 Si 1.86794 * 120.00173 * 168.10002 * 21 19 18 24 24 H 1.48499 * 109.47372 * 179.72448 * 23 21 19 25 25 H 1.48502 * 109.46927 * 299.72541 * 23 21 19 26 26 H 1.48505 * 109.46798 * 59.72311 * 23 21 19 27 27 C 1.40883 * 119.79144 * 0.25377 * 18 17 16 28 28 C 1.36322 * 119.89459 * 359.48307 * 27 18 17 29 29 H 1.08999 * 109.46627 * 270.01958 * 1 2 3 30 30 H 1.08998 * 109.47027 * 30.01760 * 1 2 3 31 31 H 1.09000 * 109.47161 * 150.02451 * 1 2 3 32 32 H 1.08008 * 125.88639 * 0.02562 * 3 2 1 33 33 H 1.07996 * 126.29738 * 180.02562 * 4 3 2 34 34 H 1.08006 * 126.29359 * 180.23452 * 5 4 3 35 35 H 1.08989 * 110.85184 * 100.19363 * 9 7 6 36 36 H 1.09001 * 110.66650 * 337.04152 * 9 7 6 37 37 H 1.09001 * 111.00536 * 277.22699 * 10 9 7 38 38 H 1.09001 * 111.03336 * 153.39256 * 10 9 7 39 39 H 1.08997 * 110.36811 * 204.15278 * 11 10 9 40 40 H 1.09002 * 110.46029 * 81.87562 * 11 10 9 41 41 H 1.07999 * 119.94304 * 359.94991 * 16 15 13 42 42 H 1.08002 * 120.05537 * 180.02562 * 17 16 15 43 43 H 0.97001 * 119.99355 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.05755 * 179.72888 * 27 18 17 45 45 H 1.07998 * 119.95023 * 180.25044 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2595 1.1080 0.0000 4 6 3.5461 0.7044 0.0006 5 6 3.5460 -0.7045 0.0062 6 6 2.2594 -1.1081 0.0004 7 6 1.7819 -2.5375 0.0010 8 1 1.2365 -2.7487 -0.9188 9 6 0.8680 -2.7880 1.2193 10 6 1.2698 -4.2175 1.6694 11 6 2.7893 -4.2230 1.3682 12 7 2.9298 -3.4481 0.1219 13 6 3.9453 -3.5530 -0.7579 14 8 3.9062 -2.9401 -1.8074 15 6 5.1051 -4.4121 -0.4476 16 6 5.3745 -4.7685 0.8794 17 6 6.4439 -5.5620 1.1707 18 6 7.2785 -6.0241 0.1339 19 6 8.3871 -6.8453 0.4306 20 1 8.8653 -6.7787 1.3966 21 6 8.8678 -7.7477 -0.5291 22 7 8.1603 -8.0038 -1.5971 23 14 10.5161 -8.5895 -0.2766 24 1 10.7908 -9.4938 -1.4221 25 1 11.5869 -7.5645 -0.1873 26 1 10.4810 -9.3795 0.9804 27 6 7.0062 -5.6589 -1.1992 28 6 5.9313 -4.8694 -1.4814 29 1 -0.3632 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.9172 2.1324 0.0004 33 1 4.4166 1.3436 0.0011 34 1 4.4165 -1.3438 0.0117 35 1 -0.1822 -2.7557 0.9296 36 1 1.0715 -2.0639 2.0082 37 1 0.7517 -4.9731 1.0789 38 1 1.0819 -4.3598 2.7336 39 1 3.1435 -5.2434 1.2224 40 1 3.3398 -3.7430 2.1774 41 1 4.7341 -4.4138 1.6734 42 1 6.6506 -5.8367 2.1946 43 1 8.4927 -8.6284 -2.2608 44 1 7.6457 -6.0071 -1.9969 45 1 5.7194 -4.5922 -2.5035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270312392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:43 Heat of formation + Delta-G solvation = 50.894669 kcal Electronic energy + Delta-G solvation = -27267.609202 eV Core-core repulsion = 23637.011919 eV Total energy + Delta-G solvation = -3630.597283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25754 -39.44739 -37.44245 -36.54907 -33.85164 -32.83352 -31.49936 -30.78547 -29.89621 -29.19674 -26.87322 -26.28260 -25.91678 -23.61892 -21.66846 -21.29032 -20.75985 -20.22183 -19.48738 -18.42226 -17.48195 -17.11160 -16.44504 -15.85220 -15.34913 -15.16354 -14.79299 -14.17391 -14.00710 -13.73999 -13.45287 -13.23277 -13.07907 -12.95673 -12.88038 -12.50802 -12.42945 -12.25992 -12.13038 -11.83287 -11.79032 -11.63533 -11.33811 -11.25406 -11.20832 -10.95846 -10.92293 -10.77321 -10.51495 -9.91688 -9.42792 -9.33739 -8.93073 -8.37055 -8.24911 -7.74082 -7.63030 -7.46248 -6.91491 -4.56090 2.29803 2.42024 2.93387 2.98464 2.99817 3.02238 3.07674 3.34944 3.58326 3.79119 3.88337 4.52279 4.57969 4.61821 4.68662 4.82746 5.00798 5.06794 5.22713 5.24947 5.30350 5.49148 5.60355 5.61646 5.70710 5.85372 5.88735 5.90661 5.95532 6.01830 6.17070 6.19227 6.32861 6.56184 6.64512 6.76367 6.87228 6.91255 7.11195 7.17066 7.31252 7.46644 7.50745 7.55615 7.66713 7.87545 7.92430 8.10487 8.23085 8.49451 8.69658 8.81331 9.07884 9.99449 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.002963 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.676377 B = 9447.416597 C = 9910.847515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.450 5.450 3 C -0.025 4.025 4 C -0.200 4.200 5 C -0.163 4.163 6 C 0.009 3.991 7 C 0.213 3.787 8 H 0.075 0.925 9 C -0.127 4.127 10 C -0.135 4.135 11 C 0.103 3.897 12 N -0.614 5.614 13 C 0.589 3.411 14 O -0.555 6.555 15 C -0.273 4.273 16 C -0.067 4.067 17 C -0.234 4.234 18 C 0.128 3.872 19 C -0.447 4.447 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.779 5.779 23 Si 0.915 3.085 24 H -0.276 1.276 25 H -0.262 1.262 26 H -0.263 1.263 27 C -0.176 4.176 28 C -0.040 4.040 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.157 0.843 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.286 0.714 44 H 0.123 0.877 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 8.612 6.145 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.128 5.128 3 C -0.154 4.154 4 C -0.225 4.225 5 C -0.187 4.187 6 C -0.103 4.103 7 C 0.108 3.892 8 H 0.093 0.907 9 C -0.165 4.165 10 C -0.173 4.173 11 C -0.020 4.020 12 N -0.350 5.350 13 C 0.385 3.615 14 O -0.434 6.434 15 C -0.277 4.277 16 C -0.085 4.085 17 C -0.254 4.254 18 C 0.125 3.875 19 C -0.475 4.475 20 H 0.100 0.900 21 C -0.148 4.148 22 N -0.403 5.403 23 Si 0.739 3.261 24 H -0.201 1.201 25 H -0.186 1.186 26 H -0.188 1.188 27 C -0.196 4.196 28 C -0.059 4.059 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.174 0.826 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.141 0.859 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.137 8.755 5.287 17.449 hybrid contribution 0.704 -0.335 0.037 0.780 sum -13.434 8.420 5.324 16.724 Atomic orbital electron populations 1.21960 0.78161 1.03922 1.02673 1.43687 1.05486 1.05568 1.58052 1.21635 0.90559 0.90849 1.12326 1.20888 0.95788 0.95282 1.10556 1.20714 0.95617 0.94656 1.07749 1.20473 0.90714 0.88183 1.10890 1.19562 0.87332 0.84096 0.98243 0.90736 1.22749 0.98639 0.97893 0.97242 1.22855 0.96153 0.96424 1.01897 1.22585 0.95205 0.97441 0.86747 1.48259 1.23077 1.39879 1.23774 1.18387 0.80914 0.80585 0.81575 1.90694 1.79816 1.47983 1.24931 1.18862 1.01323 1.12958 0.94591 1.20990 0.96916 0.95927 0.94703 1.20725 0.98801 1.07635 0.98190 1.17798 0.90231 0.87934 0.91524 1.19775 1.11109 1.16319 1.00286 0.89972 1.26072 0.98509 0.96192 0.94006 1.69721 1.35795 1.26694 1.08097 0.86246 0.81474 0.79370 0.79025 1.20111 1.18591 1.18778 1.21072 0.99367 1.01464 0.97661 1.20473 0.93794 0.94978 0.96672 0.91295 0.90267 0.90231 0.82567 0.85072 0.85010 0.90483 0.90567 0.90495 0.89909 0.89199 0.91380 0.87510 0.88577 0.90309 0.85906 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.13 59.85 0.61 1.21 16 2 N -0.45 -5.86 3.15 -119.90 -0.38 -6.23 16 3 C -0.02 -0.33 11.43 -16.75 -0.19 -0.52 16 4 C -0.20 -3.18 10.86 -39.78 -0.43 -3.61 16 5 C -0.16 -3.01 9.08 -39.78 -0.36 -3.37 16 6 C 0.01 0.14 5.83 -81.79 -0.48 -0.34 16 7 C 0.21 3.16 2.82 -68.10 -0.19 2.97 16 8 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 9 C -0.13 -1.32 5.47 -24.89 -0.14 -1.45 16 10 C -0.14 -1.38 7.09 -24.58 -0.17 -1.56 16 11 C 0.10 1.45 4.94 -2.53 -0.01 1.43 16 12 N -0.61 -10.71 2.82 -165.49 -0.47 -11.17 16 13 C 0.59 12.87 5.69 -12.43 -0.07 12.80 16 14 O -0.55 -13.72 15.61 5.28 0.08 -13.64 16 15 C -0.27 -6.33 5.76 -104.73 -0.60 -6.93 16 16 C -0.07 -1.44 8.02 -39.61 -0.32 -1.75 16 17 C -0.23 -5.44 9.73 -39.27 -0.38 -5.82 16 18 C 0.13 3.29 5.56 -106.80 -0.59 2.70 16 19 C -0.45 -11.24 9.06 -37.75 -0.34 -11.58 16 20 H 0.08 1.96 7.88 -52.49 -0.41 1.54 16 21 C 0.07 1.73 5.23 -17.31 -0.09 1.64 16 22 N -0.78 -19.31 10.81 55.56 0.60 -18.71 16 23 Si 0.92 17.74 29.58 -169.99 -5.03 12.71 16 24 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.18 -4.57 8.61 -39.27 -0.34 -4.91 16 28 C -0.04 -0.99 9.52 -39.61 -0.38 -1.37 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.60 7.53 -51.93 -0.39 0.21 16 32 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.13 2.80 6.23 -52.48 -0.33 2.47 16 35 H 0.08 0.61 8.01 -51.93 -0.42 0.19 16 36 H 0.08 0.79 7.84 -51.93 -0.41 0.39 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.36 6.63 -51.93 -0.34 1.01 16 40 H 0.07 0.92 6.88 -51.93 -0.36 0.57 16 41 H 0.11 1.94 4.18 -52.49 -0.22 1.72 16 42 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.29 6.43 8.29 -40.82 -0.34 6.09 16 44 H 0.12 3.27 6.15 -52.48 -0.32 2.95 16 45 H 0.10 2.40 7.77 -52.49 -0.41 1.99 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -31.09 360.39 -10.37 -41.46 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.12 Total: 10.60 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -4.49 Total: -20.45 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.24 Total: -36.11 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.09 -10.37 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270312392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.352 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds