Wall clock time and date at job start Sat Apr 11 2020 01:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36344 * 125.63362 * 2 1 4 4 C 1.34847 * 108.21826 * 180.25985 * 3 2 1 5 5 C 1.40893 * 107.41663 * 359.74050 * 4 3 2 6 6 C 1.34857 * 107.41574 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.88846 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.86676 * 115.72884 * 7 6 5 9 9 C 1.54317 * 109.88636 * 236.74653 * 7 6 5 10 10 C 1.55537 * 102.76282 * 141.73753 * 9 7 6 11 11 C 1.54914 * 101.59966 * 324.46799 * 10 9 7 12 12 N 1.47026 * 109.88124 * 354.71889 * 7 6 5 13 13 C 1.34772 * 125.65091 * 61.44783 * 12 7 6 14 14 O 1.21589 * 119.99903 * 173.66202 * 13 12 7 15 15 C 1.47642 * 120.00107 * 353.66824 * 13 12 7 16 16 C 1.40007 * 119.89268 * 15.58033 * 15 13 12 17 17 C 1.36324 * 120.10556 * 179.71820 * 16 15 13 18 18 C 1.40896 * 119.88523 * 0.55685 * 17 16 15 19 19 C 1.41106 * 120.09689 * 179.73940 * 18 17 16 20 20 H 1.08001 * 120.00677 * 328.15148 * 19 18 17 21 21 C 1.40232 * 119.99864 * 148.15534 * 19 18 17 22 22 N 1.30643 * 120.00256 * 166.60694 * 21 19 18 23 23 Si 1.86806 * 119.99655 * 346.60643 * 21 19 18 24 24 H 1.48500 * 109.47075 * 92.33802 * 23 21 19 25 25 H 1.48503 * 109.46901 * 212.33592 * 23 21 19 26 26 H 1.48504 * 109.47088 * 332.33382 * 23 21 19 27 27 C 1.40884 * 119.79402 * 359.71749 * 18 17 16 28 28 C 1.36309 * 119.89588 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.47594 * 270.19213 * 1 2 3 30 30 H 1.08999 * 109.47482 * 30.19810 * 1 2 3 31 31 H 1.09005 * 109.46938 * 150.20086 * 1 2 3 32 32 H 1.07999 * 125.88710 * 359.97438 * 3 2 1 33 33 H 1.08000 * 126.29143 * 179.70821 * 4 3 2 34 34 H 1.08002 * 126.29200 * 179.97438 * 5 4 3 35 35 H 1.09001 * 110.71956 * 260.13417 * 9 7 6 36 36 H 1.09005 * 110.71972 * 23.40274 * 9 7 6 37 37 H 1.09005 * 110.96895 * 206.40695 * 10 9 7 38 38 H 1.08997 * 111.06362 * 82.57611 * 10 9 7 39 39 H 1.09006 * 110.36774 * 278.20805 * 11 10 9 40 40 H 1.08994 * 110.37060 * 155.88569 * 11 10 9 41 41 H 1.07994 * 119.94951 * 359.97438 * 16 15 13 42 42 H 1.07993 * 120.05513 * 180.27594 * 17 16 15 43 43 H 0.97003 * 119.99975 * 179.97438 * 22 21 19 44 44 H 1.08006 * 120.05148 * 180.02562 * 27 18 17 45 45 H 1.08001 * 119.95163 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7046 -0.0058 5 6 3.5461 -0.7044 -0.0034 6 6 2.2593 -1.1080 0.0043 7 6 1.7819 -2.5374 0.0088 8 1 1.2476 -2.7466 0.9356 9 6 0.8540 -2.7847 -1.1993 10 6 1.2474 -4.2216 -1.6462 11 6 2.7706 -4.2296 -1.3638 12 7 2.9286 -3.4480 -0.1238 13 6 3.9546 -3.5507 0.7441 14 8 4.7924 -4.4191 0.5950 15 6 4.0611 -2.6087 1.8759 16 6 2.9558 -1.8321 2.2439 17 6 3.0476 -0.9651 3.2919 18 6 4.2610 -0.8428 3.9976 19 6 4.3626 0.0572 5.0796 20 1 3.7882 0.9718 5.0772 21 6 5.2097 -0.2358 6.1581 22 7 5.5089 0.6944 7.0252 23 14 5.9100 -1.9564 6.3549 24 1 7.2318 -2.0328 5.6823 25 1 6.0711 -2.2630 7.7990 26 1 4.9840 -2.9411 5.7401 27 6 5.3721 -1.6222 3.6198 28 6 5.2691 -2.4902 2.5739 29 1 -0.3634 0.0034 1.0276 30 1 -0.3634 0.8882 -0.5169 31 1 -0.3633 -0.8918 -0.5107 32 1 1.9170 2.1325 -0.0004 33 1 4.4165 1.3438 -0.0118 34 1 4.4166 -1.3436 -0.0071 35 1 -0.1923 -2.7457 -0.8962 36 1 1.0538 -2.0646 -1.9928 37 1 1.0461 -4.3689 -2.7073 38 1 0.7347 -4.9728 -1.0454 39 1 3.3108 -3.7548 -2.1829 40 1 3.1238 -5.2502 -1.2165 41 1 2.0277 -1.9231 1.6993 42 1 2.1932 -0.3698 3.5779 43 1 6.0946 0.4916 7.7714 44 1 6.3041 -1.5321 4.1581 45 1 6.1202 -3.0884 2.2838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270312394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:45 Heat of formation + Delta-G solvation = 80.863422 kcal Electronic energy + Delta-G solvation = -28604.220154 eV Core-core repulsion = 24974.922414 eV Total energy + Delta-G solvation = -3629.297740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60120 -39.39635 -37.65585 -36.71502 -33.84685 -32.82900 -31.92022 -30.81886 -30.19293 -29.39046 -26.91512 -26.18475 -25.81692 -23.58339 -22.02348 -21.25369 -20.77213 -20.23740 -19.56434 -18.39488 -17.72252 -17.14275 -16.65785 -15.65327 -15.50755 -15.14330 -14.88385 -14.21058 -14.13167 -13.70371 -13.60145 -13.29401 -13.11876 -13.00300 -12.80241 -12.69514 -12.56458 -12.26095 -12.13685 -12.01215 -11.79910 -11.68588 -11.53456 -11.25222 -11.19354 -10.89080 -10.71913 -10.67358 -10.11965 -10.03275 -9.61357 -9.22411 -9.01878 -8.41904 -8.24011 -7.89487 -7.63819 -7.11934 -7.06594 -4.60148 2.12455 2.55404 2.85122 3.01394 3.08337 3.19768 3.29395 3.51693 3.54481 3.70426 3.93822 4.39387 4.52198 4.55941 4.71684 4.80501 5.00267 5.09865 5.17765 5.30930 5.41187 5.43160 5.47245 5.53637 5.60810 5.65297 5.80537 5.90825 6.02413 6.05147 6.07976 6.15501 6.18753 6.51042 6.58004 6.74649 6.80447 6.83631 6.86365 7.09867 7.40116 7.42385 7.52710 7.60053 7.64251 7.71097 7.83592 8.03279 8.05411 8.25072 8.58893 8.69402 8.89196 9.93827 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.005021 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.770005 B = 5575.401720 C = 6749.557193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.446 5.446 3 C -0.016 4.016 4 C -0.192 4.192 5 C -0.148 4.148 6 C -0.004 4.004 7 C 0.205 3.795 8 H 0.089 0.911 9 C -0.133 4.133 10 C -0.132 4.132 11 C 0.108 3.892 12 N -0.614 5.614 13 C 0.591 3.409 14 O -0.566 6.566 15 C -0.277 4.277 16 C -0.044 4.044 17 C -0.216 4.216 18 C 0.116 3.884 19 C -0.430 4.430 20 H 0.093 0.907 21 C 0.083 3.917 22 N -0.799 5.799 23 Si 0.915 3.085 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.242 1.242 27 C -0.255 4.255 28 C -0.011 4.011 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.288 0.712 44 H 0.102 0.898 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 -2.607 -13.940 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.124 5.124 3 C -0.145 4.145 4 C -0.216 4.216 5 C -0.172 4.172 6 C -0.115 4.115 7 C 0.100 3.900 8 H 0.107 0.893 9 C -0.171 4.171 10 C -0.170 4.170 11 C -0.014 4.014 12 N -0.349 5.349 13 C 0.388 3.612 14 O -0.446 6.446 15 C -0.281 4.281 16 C -0.062 4.062 17 C -0.235 4.235 18 C 0.112 3.888 19 C -0.457 4.457 20 H 0.111 0.889 21 C -0.138 4.138 22 N -0.422 5.422 23 Si 0.742 3.258 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.165 1.165 27 C -0.274 4.274 28 C -0.030 4.030 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.379 -2.937 -13.713 18.060 hybrid contribution 0.427 -0.224 0.406 0.630 sum -10.953 -3.161 -13.307 17.523 Atomic orbital electron populations 1.22072 0.78383 1.03890 1.03118 1.43552 1.05236 1.05383 1.58265 1.21589 0.90506 0.90706 1.11681 1.20809 0.95742 0.95175 1.09917 1.20752 0.95281 0.94778 1.06394 1.20054 0.90966 0.87794 1.12688 1.20097 0.87100 0.84547 0.98283 0.89328 1.22939 0.98812 0.97684 0.97635 1.22843 0.95637 0.96604 1.01887 1.22108 0.95462 0.96995 0.86878 1.48172 1.23262 1.39563 1.23915 1.18344 0.78477 0.83324 0.81075 1.90666 1.41262 1.36657 1.76058 1.18686 0.97351 1.08290 1.03800 1.21504 0.97279 0.93377 0.94019 1.20530 0.97001 1.04655 1.01363 1.17844 0.90395 0.89132 0.91403 1.19691 1.20046 1.05224 1.00776 0.88934 1.26295 0.92925 0.99663 0.94900 1.69581 1.26667 1.34602 1.11325 0.86256 0.80760 0.82535 0.76254 1.19304 1.21909 1.16457 1.20681 0.98566 1.05809 1.02314 1.20319 0.95206 0.94353 0.93110 0.91190 0.90256 0.90048 0.82716 0.85271 0.85005 0.90076 0.90202 0.89972 0.90514 0.91907 0.90367 0.86171 0.88702 0.90090 0.88016 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.87 59.85 0.65 1.23 16 2 N -0.45 -5.84 3.15 -119.90 -0.38 -6.21 16 3 C -0.02 -0.23 11.43 -16.75 -0.19 -0.42 16 4 C -0.19 -3.24 10.86 -39.78 -0.43 -3.67 16 5 C -0.15 -2.67 7.32 -39.78 -0.29 -2.96 16 6 C 0.00 -0.06 3.47 -81.79 -0.28 -0.35 16 7 C 0.21 2.79 2.42 -68.11 -0.16 2.63 16 8 H 0.09 1.24 6.26 -51.93 -0.33 0.91 16 9 C -0.13 -1.24 4.96 -24.69 -0.12 -1.36 16 10 C -0.13 -1.18 7.10 -24.37 -0.17 -1.36 16 11 C 0.11 1.40 6.94 -2.53 -0.02 1.39 16 12 N -0.61 -10.05 2.83 -165.51 -0.47 -10.52 16 13 C 0.59 12.30 6.46 -12.42 -0.08 12.22 16 14 O -0.57 -13.30 16.66 5.29 0.09 -13.21 16 15 C -0.28 -6.11 3.90 -104.73 -0.41 -6.52 16 16 C -0.04 -0.91 5.97 -39.61 -0.24 -1.14 16 17 C -0.22 -4.94 9.73 -39.27 -0.38 -5.32 16 18 C 0.12 2.91 5.11 -106.80 -0.55 2.36 16 19 C -0.43 -11.39 9.59 -37.75 -0.36 -11.75 16 20 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.08 2.14 5.46 -17.31 -0.09 2.04 16 22 N -0.80 -20.81 13.92 55.56 0.77 -20.03 16 23 Si 0.92 21.01 24.44 -169.99 -4.15 16.86 16 24 H -0.27 -6.01 6.64 56.52 0.38 -5.64 16 25 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.24 -5.76 6.78 56.52 0.38 -5.38 16 27 C -0.25 -6.28 7.00 -39.28 -0.27 -6.56 16 28 C -0.01 -0.25 9.52 -39.61 -0.38 -0.63 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.55 5.25 -51.93 -0.27 0.28 16 32 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.13 2.71 5.69 -52.49 -0.30 2.41 16 35 H 0.08 0.56 7.08 -51.93 -0.37 0.19 16 36 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.06 7.98 -51.93 -0.41 0.65 16 41 H 0.12 2.17 2.45 -52.52 -0.13 2.04 16 42 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.29 6.80 8.29 -40.82 -0.34 6.47 16 44 H 0.10 2.50 4.56 -52.48 -0.24 2.26 16 45 H 0.10 2.33 7.71 -52.49 -0.40 1.92 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -31.20 345.69 -8.56 -39.76 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.84 Total: 8.33 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -3.79 Total: -20.17 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.07 Total: -36.77 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.15 Total: 16.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.20 -8.56 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270312394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.619 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds