Wall clock time and date at job start Sat Apr 11 2020 01:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36344 * 125.63362 * 2 1 4 4 C 1.34847 * 108.21826 * 180.25985 * 3 2 1 5 5 C 1.40893 * 107.41663 * 359.74050 * 4 3 2 6 6 C 1.34857 * 107.41574 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.88846 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.86676 * 115.72884 * 7 6 5 9 9 C 1.54317 * 109.88636 * 236.74653 * 7 6 5 10 10 C 1.55537 * 102.76282 * 141.73753 * 9 7 6 11 11 C 1.54914 * 101.59966 * 324.46799 * 10 9 7 12 12 N 1.47026 * 109.88124 * 354.71889 * 7 6 5 13 13 C 1.34772 * 125.65091 * 61.44783 * 12 7 6 14 14 O 1.21589 * 119.99903 * 173.66202 * 13 12 7 15 15 C 1.47642 * 120.00107 * 353.66824 * 13 12 7 16 16 C 1.40007 * 119.89268 * 15.58033 * 15 13 12 17 17 C 1.36324 * 120.10556 * 179.71820 * 16 15 13 18 18 C 1.40896 * 119.88523 * 0.55685 * 17 16 15 19 19 C 1.41106 * 120.09689 * 179.73940 * 18 17 16 20 20 H 1.08001 * 120.00677 * 328.15148 * 19 18 17 21 21 C 1.40232 * 119.99864 * 148.15534 * 19 18 17 22 22 N 1.30643 * 120.00256 * 166.60694 * 21 19 18 23 23 Si 1.86806 * 119.99655 * 346.60643 * 21 19 18 24 24 H 1.48500 * 109.47075 * 92.33802 * 23 21 19 25 25 H 1.48503 * 109.46901 * 212.33592 * 23 21 19 26 26 H 1.48504 * 109.47088 * 332.33382 * 23 21 19 27 27 C 1.40884 * 119.79402 * 359.71749 * 18 17 16 28 28 C 1.36309 * 119.89588 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.47594 * 270.19213 * 1 2 3 30 30 H 1.08999 * 109.47482 * 30.19810 * 1 2 3 31 31 H 1.09005 * 109.46938 * 150.20086 * 1 2 3 32 32 H 1.07999 * 125.88710 * 359.97438 * 3 2 1 33 33 H 1.08000 * 126.29143 * 179.70821 * 4 3 2 34 34 H 1.08002 * 126.29200 * 179.97438 * 5 4 3 35 35 H 1.09001 * 110.71956 * 260.13417 * 9 7 6 36 36 H 1.09005 * 110.71972 * 23.40274 * 9 7 6 37 37 H 1.09005 * 110.96895 * 206.40695 * 10 9 7 38 38 H 1.08997 * 111.06362 * 82.57611 * 10 9 7 39 39 H 1.09006 * 110.36774 * 278.20805 * 11 10 9 40 40 H 1.08994 * 110.37060 * 155.88569 * 11 10 9 41 41 H 1.07994 * 119.94951 * 359.97438 * 16 15 13 42 42 H 1.07993 * 120.05513 * 180.27594 * 17 16 15 43 43 H 0.97003 * 119.99975 * 179.97438 * 22 21 19 44 44 H 1.08006 * 120.05148 * 180.02562 * 27 18 17 45 45 H 1.08001 * 119.95163 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7046 -0.0058 5 6 3.5461 -0.7044 -0.0034 6 6 2.2593 -1.1080 0.0043 7 6 1.7819 -2.5374 0.0088 8 1 1.2476 -2.7466 0.9356 9 6 0.8540 -2.7847 -1.1993 10 6 1.2474 -4.2216 -1.6462 11 6 2.7706 -4.2296 -1.3638 12 7 2.9286 -3.4480 -0.1238 13 6 3.9546 -3.5507 0.7441 14 8 4.7924 -4.4191 0.5950 15 6 4.0611 -2.6087 1.8759 16 6 2.9558 -1.8321 2.2439 17 6 3.0476 -0.9651 3.2919 18 6 4.2610 -0.8428 3.9976 19 6 4.3626 0.0572 5.0796 20 1 3.7882 0.9718 5.0772 21 6 5.2097 -0.2358 6.1581 22 7 5.5089 0.6944 7.0252 23 14 5.9100 -1.9564 6.3549 24 1 7.2318 -2.0328 5.6823 25 1 6.0711 -2.2630 7.7990 26 1 4.9840 -2.9411 5.7401 27 6 5.3721 -1.6222 3.6198 28 6 5.2691 -2.4902 2.5739 29 1 -0.3634 0.0034 1.0276 30 1 -0.3634 0.8882 -0.5169 31 1 -0.3633 -0.8918 -0.5107 32 1 1.9170 2.1325 -0.0004 33 1 4.4165 1.3438 -0.0118 34 1 4.4166 -1.3436 -0.0071 35 1 -0.1923 -2.7457 -0.8962 36 1 1.0538 -2.0646 -1.9928 37 1 1.0461 -4.3689 -2.7073 38 1 0.7347 -4.9728 -1.0454 39 1 3.3108 -3.7548 -2.1829 40 1 3.1238 -5.2502 -1.2165 41 1 2.0277 -1.9231 1.6993 42 1 2.1932 -0.3698 3.5779 43 1 6.0946 0.4916 7.7714 44 1 6.3041 -1.5321 4.1581 45 1 6.1202 -3.0884 2.2838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270312394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:44 Heat of formation + Delta-G solvation = 62.573722 kcal Electronic energy + Delta-G solvation = -28605.013255 eV Core-core repulsion = 24974.922414 eV Total energy + Delta-G solvation = -3630.090841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.83827 -40.79945 -39.30017 -38.23811 -35.70458 -34.02176 -33.20864 -32.05597 -31.99999 -30.97150 -28.07975 -27.62381 -26.99298 -24.98057 -23.55408 -22.78880 -22.08350 -21.58798 -20.85423 -19.71670 -19.55879 -18.39681 -18.08677 -17.28286 -17.00247 -16.34913 -16.26214 -15.63057 -15.60920 -15.29501 -14.81102 -14.67734 -14.47258 -14.39893 -14.12070 -14.03027 -14.00125 -13.79299 -13.51606 -13.35784 -13.12958 -12.88042 -12.77137 -12.66413 -12.54321 -12.24166 -12.02508 -11.93198 -11.85163 -11.64352 -11.45588 -11.04035 -10.74579 -9.83005 -9.76595 -9.50117 -9.19348 -9.00621 -8.53395 -6.59826 0.30354 0.94293 1.21976 1.32104 1.41303 1.44440 1.80398 1.99475 2.07012 2.23874 2.35846 2.68277 3.45271 3.53401 3.58622 3.75932 3.92445 4.10031 4.18834 4.20358 4.25255 4.34597 4.41871 4.51201 4.57874 4.65794 4.79397 4.79673 4.84245 4.85327 4.90913 4.92995 4.94826 4.98064 5.06006 5.20708 5.26358 5.38297 5.50504 5.53017 5.55929 5.69453 5.78922 5.88446 6.13986 6.14702 6.29235 6.35343 6.53316 6.64109 6.66740 6.75416 7.26320 8.05835 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.005021 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.770005 B = 5575.401720 C = 6749.557193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.436 5.436 3 C -0.002 4.002 4 C -0.231 4.231 5 C -0.186 4.186 6 C 0.002 3.998 7 C 0.193 3.807 8 H 0.096 0.904 9 C -0.120 4.120 10 C -0.116 4.116 11 C 0.096 3.904 12 N -0.610 5.610 13 C 0.587 3.413 14 O -0.600 6.600 15 C -0.267 4.267 16 C -0.028 4.028 17 C -0.221 4.221 18 C 0.103 3.897 19 C -0.463 4.463 20 H 0.068 0.932 21 C 0.056 3.944 22 N -0.832 5.832 23 Si 0.960 3.040 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.257 1.257 27 C -0.265 4.265 28 C -0.029 4.029 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.187 0.813 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.157 0.843 42 H 0.105 0.895 43 H 0.298 0.702 44 H 0.097 0.903 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.628 -3.640 -16.286 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.112 5.112 3 C -0.132 4.132 4 C -0.256 4.256 5 C -0.211 4.211 6 C -0.111 4.111 7 C 0.089 3.911 8 H 0.113 0.887 9 C -0.157 4.157 10 C -0.153 4.153 11 C -0.026 4.026 12 N -0.342 5.342 13 C 0.382 3.618 14 O -0.484 6.484 15 C -0.271 4.271 16 C -0.046 4.046 17 C -0.241 4.241 18 C 0.100 3.900 19 C -0.492 4.492 20 H 0.086 0.914 21 C -0.161 4.161 22 N -0.457 5.457 23 Si 0.784 3.216 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.284 4.284 28 C -0.048 4.048 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.204 0.796 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.173 0.827 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.433 -3.954 -16.082 22.637 hybrid contribution 1.574 0.056 0.828 1.779 sum -13.858 -3.898 -15.255 20.975 Atomic orbital electron populations 1.22520 0.74885 1.06622 1.04457 1.43817 1.07160 1.04068 1.56185 1.21975 0.89629 0.92344 1.09268 1.20918 0.97167 0.94960 1.12519 1.20561 0.95666 0.95087 1.09823 1.20121 0.90316 0.89164 1.11470 1.20439 0.86732 0.82850 1.01127 0.88723 1.22975 0.99597 0.97802 0.95346 1.22850 0.91631 0.96696 1.04148 1.22435 0.99193 0.95846 0.85095 1.48155 1.22408 1.39832 1.23797 1.18121 0.79406 0.82653 0.81577 1.90640 1.42889 1.37904 1.76976 1.19040 0.96970 1.07643 1.03447 1.21821 0.98234 0.91583 0.92934 1.20705 0.96555 1.05136 1.01662 1.17979 0.91365 0.89159 0.91488 1.19619 1.21757 1.05388 1.02408 0.91421 1.26758 0.92989 1.01878 0.94472 1.69584 1.28103 1.35724 1.12316 0.85587 0.79850 0.79120 0.77037 1.19064 1.19810 1.18133 1.20703 0.98484 1.06359 1.02853 1.20467 0.96253 0.94672 0.93402 0.90466 0.87623 0.87485 0.79591 0.86439 0.88663 0.86018 0.89706 0.86808 0.89324 0.91837 0.91379 0.82679 0.87713 0.89129 0.88527 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 10.87 127.77 1.39 2.01 16 2 N -0.44 -9.77 3.15 -533.24 -1.68 -11.45 16 3 C 0.00 -0.04 11.43 83.21 0.95 0.91 16 4 C -0.23 -7.92 10.86 22.14 0.24 -7.67 16 5 C -0.19 -6.78 7.32 22.14 0.16 -6.62 16 6 C 0.00 0.05 3.47 41.08 0.14 0.20 16 7 C 0.19 4.54 2.42 44.59 0.11 4.65 16 8 H 0.10 2.19 6.26 -2.38 -0.01 2.17 16 9 C -0.12 -1.52 4.96 31.92 0.16 -1.36 16 10 C -0.12 -1.45 7.10 32.12 0.23 -1.23 16 11 C 0.10 2.24 6.94 86.86 0.60 2.85 16 12 N -0.61 -18.87 2.83 -795.83 -2.25 -21.12 16 13 C 0.59 24.47 6.46 86.73 0.56 25.03 16 14 O -0.60 -28.74 16.66 -4.00 -0.07 -28.81 16 15 C -0.27 -11.90 3.90 -19.93 -0.08 -11.98 16 16 C -0.03 -1.15 5.97 22.25 0.13 -1.01 16 17 C -0.22 -10.16 9.73 22.47 0.22 -9.94 16 18 C 0.10 5.37 5.11 -21.28 -0.11 5.26 16 19 C -0.46 -25.73 9.59 23.46 0.22 -25.50 16 20 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 21 C 0.06 3.01 5.46 85.35 0.47 3.48 16 22 N -0.83 -44.85 13.92 21.87 0.30 -44.54 16 23 Si 0.96 44.39 24.44 68.60 1.68 46.07 16 24 H -0.26 -12.00 6.64 99.48 0.66 -11.34 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.26 -12.45 6.78 99.48 0.67 -11.77 16 27 C -0.26 -13.60 7.00 22.47 0.16 -13.44 16 28 C -0.03 -1.41 9.52 22.25 0.21 -1.20 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.69 5.25 -2.38 -0.01 0.68 16 32 H 0.19 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.10 4.12 5.69 -2.91 -0.02 4.10 16 35 H 0.12 0.69 7.08 -2.39 -0.02 0.67 16 36 H 0.08 1.09 7.85 -2.38 -0.02 1.07 16 37 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.07 1.74 7.98 -2.39 -0.02 1.73 16 41 H 0.16 5.19 2.45 -2.94 -0.01 5.19 16 42 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.30 14.41 8.29 -92.71 -0.77 13.64 16 44 H 0.10 4.97 4.56 -2.91 -0.01 4.96 16 45 H 0.10 4.85 7.71 -2.91 -0.02 4.83 16 Total: -1.00 -74.07 345.69 4.69 -69.38 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.94 Total: 26.05 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 5.77 Total: -35.57 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -3.63 Total: -77.12 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.07 Total: -28.81 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.68 Total: 46.07 kcal Total: -74.07 4.69 -69.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270312394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.951 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds