Wall clock time and date at job start Sat Apr 11 2020 01:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47655 * 2 1 4 4 C 1.50705 * 109.47255 * 239.99570 * 2 1 3 5 5 O 1.21288 * 120.00052 * 251.39326 * 4 2 1 6 6 N 1.34775 * 119.99327 * 71.39730 * 4 2 1 7 7 C 1.46496 * 120.00606 * 4.64265 * 6 4 2 8 8 C 1.50696 * 109.47305 * 95.66194 * 7 6 4 9 9 H 1.08003 * 119.99995 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00095 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00031 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00305 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47114 * 90.00477 * 12 10 8 14 14 H 1.48502 * 109.47357 * 210.00707 * 12 10 8 15 15 H 1.48506 * 109.46915 * 330.00597 * 12 10 8 16 16 C 1.40033 * 119.99225 * 184.64365 * 6 4 2 17 17 C 1.38856 * 120.04742 * 352.54856 * 16 6 4 18 18 C 1.38109 * 119.95148 * 179.77294 * 17 16 6 19 19 C 1.38478 * 120.04982 * 0.50517 * 18 17 16 20 20 F 1.35097 * 119.95634 * 179.72364 * 19 18 17 21 21 C 1.38480 * 120.08692 * 359.74932 * 19 18 17 22 22 C 1.38119 * 120.04475 * 0.02562 * 21 19 18 23 23 N 1.46899 * 109.46790 * 119.99826 * 2 1 3 24 24 C 1.46907 * 111.00251 * 58.95444 * 23 2 1 25 25 C 1.46905 * 111.00138 * 294.99925 * 23 2 1 26 26 C 1.53005 * 109.46946 * 190.00076 * 25 23 2 27 27 O 1.42898 * 109.47007 * 64.99946 * 26 25 23 28 28 H 1.09001 * 109.47215 * 295.20794 * 1 2 3 29 29 H 1.09002 * 109.46705 * 55.20420 * 1 2 3 30 30 H 1.09000 * 109.47399 * 175.20241 * 1 2 3 31 31 H 1.09003 * 109.46781 * 215.66845 * 7 6 4 32 32 H 1.09001 * 109.46867 * 335.66207 * 7 6 4 33 33 H 0.96998 * 119.99960 * 179.97438 * 11 10 8 34 34 H 1.07994 * 120.01981 * 0.02842 * 17 16 6 35 35 H 1.08000 * 119.97582 * 180.23549 * 18 17 16 36 36 H 1.07995 * 119.97816 * 179.97438 * 21 19 18 37 37 H 1.07997 * 120.01787 * 179.97438 * 22 21 19 38 38 H 1.08997 * 109.46742 * 59.99295 * 24 23 2 39 39 H 1.08994 * 109.47339 * 179.97438 * 24 23 2 40 40 H 1.09003 * 109.46747 * 300.00099 * 24 23 2 41 41 H 1.08993 * 109.46890 * 309.99938 * 25 23 2 42 42 H 1.09001 * 109.46809 * 69.99981 * 25 23 2 43 43 H 1.08998 * 109.46580 * 185.00227 * 26 25 23 44 44 H 1.09004 * 109.46677 * 304.99476 * 26 25 23 45 45 H 0.96706 * 113.99341 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5505 -1.8026 -1.1310 6 7 1.9059 -0.1322 -2.4412 7 6 1.3737 1.2282 -2.5513 8 6 2.5148 2.2103 -2.6162 9 1 3.5346 1.8565 -2.5795 10 6 2.2571 3.5605 -2.7234 11 7 1.0154 3.9914 -2.7686 12 14 3.6717 4.7779 -2.8046 13 1 4.0596 4.9922 -4.2219 14 1 3.2482 6.0695 -2.2065 15 1 4.8318 4.2397 -2.0498 16 6 2.2832 -0.8319 -3.5940 17 6 2.9294 -2.0560 -3.4841 18 6 3.2965 -2.7466 -4.6224 19 6 3.0299 -2.2143 -5.8727 20 9 3.3948 -2.8889 -6.9848 21 6 2.3903 -0.9912 -5.9844 22 6 2.0174 -0.2995 -4.8486 23 7 2.0196 -0.6925 1.1995 24 6 1.5282 -2.0761 1.2461 25 6 1.6486 0.0392 2.4181 26 6 2.3787 -0.5662 3.6187 27 8 3.7859 -0.3658 3.4710 28 1 -0.3634 0.4377 0.9298 29 1 -0.3633 0.5865 -0.8439 30 1 -0.3634 -1.0240 -0.0859 31 1 0.7714 1.3106 -3.4561 32 1 0.7545 1.4476 -1.6815 33 1 0.8341 4.9413 -2.8437 34 1 3.1411 -2.4696 -2.5092 35 1 3.7957 -3.7006 -4.5373 36 1 2.1836 -0.5775 -6.9603 37 1 1.5189 0.6546 -4.9362 38 1 1.8761 -2.6150 0.3648 39 1 1.9058 -2.5658 2.1436 40 1 0.4383 -2.0742 1.2640 41 1 1.9297 1.0870 2.3125 42 1 0.5721 -0.0344 2.5726 43 1 2.0368 -0.0823 4.5336 44 1 2.1673 -1.6342 3.6717 45 1 4.3127 -0.7249 4.1981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270670888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:05 Heat of formation + Delta-G solvation = -63.095506 kcal Electronic energy + Delta-G solvation = -28623.780600 eV Core-core repulsion = 24557.471107 eV Total energy + Delta-G solvation = -4066.309493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.42011 -40.58693 -38.55206 -37.29920 -35.86514 -35.36783 -32.72976 -31.35971 -30.61971 -29.01836 -28.40226 -27.34701 -25.90680 -24.11854 -23.51138 -22.40651 -21.64911 -20.36540 -18.85171 -17.46262 -17.31790 -17.11737 -16.86271 -16.16509 -15.88295 -15.27137 -15.16604 -14.90658 -14.76939 -14.48991 -14.23849 -13.97418 -13.49960 -13.41283 -13.16066 -13.00743 -12.79669 -12.59140 -12.32305 -12.27377 -12.01238 -11.91082 -11.71348 -11.31809 -11.28327 -11.16734 -10.97636 -10.74767 -10.74230 -10.55915 -10.28803 -10.08573 -9.90527 -9.14989 -8.73005 -8.62805 -8.56244 -7.93939 -7.21241 -6.30516 -4.38591 1.59777 1.75925 3.07589 3.19450 3.26773 3.31819 3.40486 4.16633 4.21023 4.29775 4.33826 4.78364 4.87216 5.03704 5.08480 5.20115 5.27661 5.29791 5.30554 5.41558 5.48508 5.52354 5.73107 5.76516 5.79627 5.84693 5.86051 5.97080 6.01178 6.11719 6.26392 6.36060 6.47589 6.61181 6.69052 6.75007 6.84063 6.99506 7.15298 7.23030 7.32231 7.62813 7.68214 7.73578 7.84881 8.02283 8.61530 8.74576 9.30030 10.75712 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.008315 B = 0.005314 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.733936 B = 5267.750845 C = 7666.977767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 H 0.124 0.876 4 C 0.532 3.468 5 O -0.526 6.526 6 N -0.532 5.532 7 C 0.219 3.781 8 C -0.541 4.541 9 H 0.064 0.936 10 C 0.069 3.931 11 N -0.890 5.890 12 Si 0.898 3.102 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.167 3.833 17 C -0.154 4.154 18 C -0.137 4.137 19 C 0.049 3.951 20 F -0.153 7.153 21 C -0.134 4.134 22 C -0.118 4.118 23 N -0.509 5.509 24 C -0.002 4.002 25 C 0.051 3.949 26 C 0.082 3.918 27 O -0.555 6.555 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.267 0.733 34 H 0.189 0.811 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.018 0.982 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 -8.635 7.143 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.042 4.042 3 H 0.142 0.858 4 C 0.323 3.677 5 O -0.406 6.406 6 N -0.251 5.251 7 C 0.100 3.900 8 C -0.579 4.579 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.528 5.528 12 Si 0.725 3.275 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.195 1.195 16 C 0.070 3.930 17 C -0.173 4.173 18 C -0.156 4.156 19 C 0.029 3.971 20 F -0.132 7.132 21 C -0.153 4.153 22 C -0.139 4.139 23 N -0.232 5.232 24 C -0.149 4.149 25 C -0.077 4.077 26 C 0.004 3.996 27 O -0.358 6.358 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.205 0.795 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.657 -8.692 6.652 11.070 hybrid contribution -0.012 0.693 0.165 0.713 sum -1.669 -7.999 6.817 10.641 Atomic orbital electron populations 1.22510 0.95463 1.02652 1.03933 1.21623 0.94005 1.00090 0.88489 0.85840 1.20452 0.77950 0.84999 0.84330 1.90099 1.44163 1.21704 1.84669 1.46002 1.58251 1.17305 1.03516 1.19947 0.95604 0.74510 0.99893 1.21386 0.93115 0.90974 1.52410 0.91752 1.24888 0.95987 0.98210 0.94346 1.69903 1.18276 1.15568 1.49032 0.86476 0.82280 0.80175 0.78584 1.20352 1.20960 1.19531 1.18081 0.96077 0.92059 0.86742 1.22706 0.98326 0.94433 1.01842 1.21055 1.02703 1.01093 0.90791 1.17717 1.03876 0.93084 0.82411 1.91419 1.90289 1.79933 1.51577 1.20838 1.01007 0.94019 0.99473 1.20933 1.01924 1.01100 0.89895 1.61888 1.59103 1.02143 1.00062 1.22965 0.96777 0.90330 1.04849 1.22203 0.96575 0.99428 0.89494 1.22200 0.82208 0.98839 0.96370 1.86686 1.17134 1.82683 1.49319 0.91558 0.89862 0.92267 0.93730 0.92422 0.92314 0.79533 0.85459 0.85189 0.83694 0.87326 0.92332 0.96399 0.89716 0.93359 0.93769 0.93715 0.78495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.76 8.13 37.16 0.30 -2.45 16 2 C 0.07 1.20 1.91 -68.86 -0.13 1.06 16 3 H 0.12 2.38 7.31 -51.93 -0.38 2.00 16 4 C 0.53 10.39 6.76 -10.98 -0.07 10.32 16 5 O -0.53 -10.53 9.91 5.55 0.05 -10.48 16 6 N -0.53 -10.87 2.69 -114.72 -0.31 -11.18 16 7 C 0.22 4.83 4.18 -5.20 -0.02 4.80 16 8 C -0.54 -13.50 9.36 -34.44 -0.32 -13.82 16 9 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -23.12 13.29 55.43 0.74 -22.38 16 12 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 16 C 0.17 3.32 6.46 -83.65 -0.54 2.78 16 17 C -0.15 -2.88 9.04 -39.40 -0.36 -3.23 16 18 C -0.14 -2.31 10.02 -39.54 -0.40 -2.71 16 19 C 0.05 0.84 7.30 -39.40 -0.29 0.55 16 20 F -0.15 -2.55 17.26 2.25 0.04 -2.51 16 21 C -0.13 -2.27 10.02 -39.54 -0.40 -2.67 16 22 C -0.12 -2.22 9.26 -39.40 -0.36 -2.59 16 23 N -0.51 -8.11 4.57 -236.27 -1.08 -9.19 16 24 C 0.00 -0.03 8.58 60.07 0.52 0.49 16 25 C 0.05 0.67 4.79 -3.82 -0.02 0.66 16 26 C 0.08 0.92 7.11 37.16 0.26 1.18 16 27 O -0.55 -7.24 13.61 -35.23 -0.48 -7.72 16 28 H 0.07 0.85 6.53 -51.93 -0.34 0.51 16 29 H 0.08 1.32 5.86 -51.93 -0.30 1.02 16 30 H 0.06 0.83 6.66 -51.93 -0.35 0.49 16 31 H 0.04 1.02 6.25 -51.93 -0.32 0.70 16 32 H 0.06 1.25 4.21 -51.93 -0.22 1.04 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 34 H 0.19 3.63 4.54 -56.15 -0.26 3.37 16 35 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.15 2.81 6.13 -52.49 -0.32 2.49 16 38 H 0.11 1.81 5.06 -51.93 -0.26 1.54 16 39 H 0.06 0.75 6.21 -51.93 -0.32 0.43 16 40 H 0.02 0.23 6.39 -51.93 -0.33 -0.10 16 41 H 0.08 1.20 8.00 -51.93 -0.42 0.79 16 42 H 0.05 0.55 6.83 -51.93 -0.35 0.20 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.04 0.46 6.26 -51.93 -0.33 0.13 16 45 H 0.37 2.94 9.12 45.56 0.42 3.36 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -28.47 356.29 -7.51 -35.98 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.90 Total: 10.86 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.93 Total: -3.97 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.65 Total: -42.75 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.42 Total: -18.20 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.47 -7.51 -35.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270670888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.112 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds