Wall clock time and date at job start Sat Apr 11 2020 01:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47655 * 2 1 4 4 C 1.50705 * 109.47255 * 239.99570 * 2 1 3 5 5 O 1.21288 * 120.00052 * 251.39326 * 4 2 1 6 6 N 1.34775 * 119.99327 * 71.39730 * 4 2 1 7 7 C 1.46496 * 120.00606 * 4.64265 * 6 4 2 8 8 C 1.50696 * 109.47305 * 95.66194 * 7 6 4 9 9 H 1.08003 * 119.99995 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00095 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00031 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00305 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47114 * 90.00477 * 12 10 8 14 14 H 1.48502 * 109.47357 * 210.00707 * 12 10 8 15 15 H 1.48506 * 109.46915 * 330.00597 * 12 10 8 16 16 C 1.40033 * 119.99225 * 184.64365 * 6 4 2 17 17 C 1.38856 * 120.04742 * 352.54856 * 16 6 4 18 18 C 1.38109 * 119.95148 * 179.77294 * 17 16 6 19 19 C 1.38478 * 120.04982 * 0.50517 * 18 17 16 20 20 F 1.35097 * 119.95634 * 179.72364 * 19 18 17 21 21 C 1.38480 * 120.08692 * 359.74932 * 19 18 17 22 22 C 1.38119 * 120.04475 * 0.02562 * 21 19 18 23 23 N 1.46899 * 109.46790 * 119.99826 * 2 1 3 24 24 C 1.46907 * 111.00251 * 58.95444 * 23 2 1 25 25 C 1.46905 * 111.00138 * 294.99925 * 23 2 1 26 26 C 1.53005 * 109.46946 * 190.00076 * 25 23 2 27 27 O 1.42898 * 109.47007 * 64.99946 * 26 25 23 28 28 H 1.09001 * 109.47215 * 295.20794 * 1 2 3 29 29 H 1.09002 * 109.46705 * 55.20420 * 1 2 3 30 30 H 1.09000 * 109.47399 * 175.20241 * 1 2 3 31 31 H 1.09003 * 109.46781 * 215.66845 * 7 6 4 32 32 H 1.09001 * 109.46867 * 335.66207 * 7 6 4 33 33 H 0.96998 * 119.99960 * 179.97438 * 11 10 8 34 34 H 1.07994 * 120.01981 * 0.02842 * 17 16 6 35 35 H 1.08000 * 119.97582 * 180.23549 * 18 17 16 36 36 H 1.07995 * 119.97816 * 179.97438 * 21 19 18 37 37 H 1.07997 * 120.01787 * 179.97438 * 22 21 19 38 38 H 1.08997 * 109.46742 * 59.99295 * 24 23 2 39 39 H 1.08994 * 109.47339 * 179.97438 * 24 23 2 40 40 H 1.09003 * 109.46747 * 300.00099 * 24 23 2 41 41 H 1.08993 * 109.46890 * 309.99938 * 25 23 2 42 42 H 1.09001 * 109.46809 * 69.99981 * 25 23 2 43 43 H 1.08998 * 109.46580 * 185.00227 * 26 25 23 44 44 H 1.09004 * 109.46677 * 304.99476 * 26 25 23 45 45 H 0.96706 * 113.99341 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5505 -1.8026 -1.1310 6 7 1.9059 -0.1322 -2.4412 7 6 1.3737 1.2282 -2.5513 8 6 2.5148 2.2103 -2.6162 9 1 3.5346 1.8565 -2.5795 10 6 2.2571 3.5605 -2.7234 11 7 1.0154 3.9914 -2.7686 12 14 3.6717 4.7779 -2.8046 13 1 4.0596 4.9922 -4.2219 14 1 3.2482 6.0695 -2.2065 15 1 4.8318 4.2397 -2.0498 16 6 2.2832 -0.8319 -3.5940 17 6 2.9294 -2.0560 -3.4841 18 6 3.2965 -2.7466 -4.6224 19 6 3.0299 -2.2143 -5.8727 20 9 3.3948 -2.8889 -6.9848 21 6 2.3903 -0.9912 -5.9844 22 6 2.0174 -0.2995 -4.8486 23 7 2.0196 -0.6925 1.1995 24 6 1.5282 -2.0761 1.2461 25 6 1.6486 0.0392 2.4181 26 6 2.3787 -0.5662 3.6187 27 8 3.7859 -0.3658 3.4710 28 1 -0.3634 0.4377 0.9298 29 1 -0.3633 0.5865 -0.8439 30 1 -0.3634 -1.0240 -0.0859 31 1 0.7714 1.3106 -3.4561 32 1 0.7545 1.4476 -1.6815 33 1 0.8341 4.9413 -2.8437 34 1 3.1411 -2.4696 -2.5092 35 1 3.7957 -3.7006 -4.5373 36 1 2.1836 -0.5775 -6.9603 37 1 1.5189 0.6546 -4.9362 38 1 1.8761 -2.6150 0.3648 39 1 1.9058 -2.5658 2.1436 40 1 0.4383 -2.0742 1.2640 41 1 1.9297 1.0870 2.3125 42 1 0.5721 -0.0344 2.5726 43 1 2.0368 -0.0823 4.5336 44 1 2.1673 -1.6342 3.6717 45 1 4.3127 -0.7249 4.1981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270670888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:05 Heat of formation + Delta-G solvation = -82.136164 kcal Electronic energy + Delta-G solvation = -28624.606265 eV Core-core repulsion = 24557.471107 eV Total energy + Delta-G solvation = -4067.135158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.77754 -42.06758 -39.86035 -38.51937 -36.98387 -36.94675 -34.62348 -32.59335 -32.04510 -30.40656 -29.60915 -29.04752 -27.07953 -25.52276 -25.12742 -23.86882 -22.99739 -21.57275 -20.28141 -18.81154 -18.74060 -18.54561 -18.33859 -17.72751 -17.05423 -16.62565 -16.57158 -16.45282 -16.28689 -15.84263 -15.54042 -15.33813 -14.82187 -14.58269 -14.49077 -14.41562 -14.10874 -14.03719 -13.79491 -13.62938 -13.49461 -13.28256 -12.97509 -12.94490 -12.75403 -12.59854 -12.44835 -12.25250 -12.11267 -11.95843 -11.88161 -11.74167 -10.80878 -10.76381 -10.63963 -10.07356 -10.01246 -9.12946 -8.75758 -8.23611 -6.38579 0.15051 0.33676 1.38538 1.41717 1.49363 1.59632 1.92970 2.38268 2.77766 2.98861 3.05709 3.36783 3.44410 3.50656 3.91058 3.97096 3.98297 4.14001 4.28852 4.30444 4.33841 4.40450 4.46806 4.50413 4.53032 4.66211 4.69405 4.75506 4.84692 4.88336 4.94565 5.00454 5.08638 5.18616 5.22808 5.26671 5.34278 5.43307 5.63829 5.70077 5.95360 5.99292 6.17510 6.21260 6.42305 6.71560 7.06635 7.14524 7.32687 8.79744 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.008315 B = 0.005314 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.733936 B = 5267.750845 C = 7666.977767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.075 3.925 3 H 0.097 0.903 4 C 0.523 3.477 5 O -0.533 6.533 6 N -0.538 5.538 7 C 0.234 3.766 8 C -0.548 4.548 9 H 0.043 0.957 10 C 0.034 3.966 11 N -0.910 5.910 12 Si 0.947 3.053 13 H -0.275 1.275 14 H -0.276 1.276 15 H -0.278 1.278 16 C 0.143 3.857 17 C -0.162 4.162 18 C -0.129 4.129 19 C 0.050 3.950 20 F -0.147 7.147 21 C -0.127 4.127 22 C -0.130 4.130 23 N -0.528 5.528 24 C 0.004 3.996 25 C 0.046 3.954 26 C 0.083 3.917 27 O -0.587 6.587 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.270 0.730 34 H 0.181 0.819 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -9.334 7.733 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.037 4.037 3 H 0.115 0.885 4 C 0.315 3.685 5 O -0.414 6.414 6 N -0.257 5.257 7 C 0.114 3.886 8 C -0.586 4.586 9 H 0.062 0.938 10 C -0.168 4.168 11 N -0.549 5.549 12 Si 0.773 3.227 13 H -0.200 1.200 14 H -0.201 1.201 15 H -0.203 1.203 16 C 0.047 3.953 17 C -0.181 4.181 18 C -0.148 4.148 19 C 0.030 3.970 20 F -0.126 7.126 21 C -0.146 4.146 22 C -0.150 4.150 23 N -0.252 5.252 24 C -0.143 4.143 25 C -0.082 4.082 26 C 0.005 3.995 27 O -0.394 6.394 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.197 0.803 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.732 -9.410 7.255 12.008 hybrid contribution 0.059 0.832 -0.034 0.835 sum -1.672 -8.578 7.222 11.337 Atomic orbital electron populations 1.22415 0.93551 1.03097 1.04412 1.21470 0.95396 0.98391 0.88397 0.88485 1.20949 0.77760 0.85137 0.84674 1.90107 1.44378 1.22014 1.84875 1.45969 1.58684 1.16758 1.04282 1.19632 0.94543 0.75014 0.99364 1.21476 0.92892 0.91913 1.52334 0.93822 1.25438 0.97744 0.99397 0.94188 1.69956 1.19310 1.15975 1.49610 0.85711 0.79795 0.78717 0.78461 1.20037 1.20057 1.20280 1.18393 0.97138 0.92834 0.86977 1.22646 0.98890 0.94323 1.02288 1.21285 1.01697 1.01722 0.90076 1.17752 1.03563 0.93046 0.82643 1.91439 1.90172 1.79753 1.51215 1.21057 0.99840 0.93763 0.99918 1.20900 1.02749 1.01065 0.90297 1.61876 1.59984 1.02961 1.00372 1.22861 0.97641 0.89310 1.04476 1.22347 0.98297 0.98402 0.89119 1.22278 0.81266 0.99653 0.96265 1.86625 1.18433 1.83277 1.51081 0.89362 0.91347 0.91366 0.94778 0.92118 0.92045 0.80259 0.82818 0.82745 0.84814 0.89757 0.90584 0.94919 0.91393 0.91157 0.90954 0.92557 0.76194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.11 8.13 71.98 0.59 -4.52 16 2 C 0.08 2.63 1.91 44.17 0.08 2.71 16 3 H 0.10 3.90 7.31 -2.39 -0.02 3.89 16 4 C 0.52 20.94 6.76 87.66 0.59 21.53 16 5 O -0.53 -21.74 9.91 -3.05 -0.03 -21.77 16 6 N -0.54 -22.67 2.69 -635.24 -1.71 -24.38 16 7 C 0.23 10.66 4.18 85.63 0.36 11.02 16 8 C -0.55 -28.11 9.36 25.60 0.24 -27.87 16 9 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 10 C 0.03 1.74 5.46 84.65 0.46 2.20 16 11 N -0.91 -47.60 13.29 21.45 0.28 -47.31 16 12 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 C 0.14 5.78 6.46 38.13 0.25 6.03 16 17 C -0.16 -6.07 9.04 22.39 0.20 -5.86 16 18 C -0.13 -4.16 10.02 22.30 0.22 -3.94 16 19 C 0.05 1.62 7.30 22.38 0.16 1.79 16 20 F -0.15 -4.53 17.26 44.97 0.78 -3.76 16 21 C -0.13 -4.16 10.02 22.30 0.22 -3.93 16 22 C -0.13 -4.93 9.26 22.39 0.21 -4.72 16 23 N -0.53 -16.55 4.57 -901.44 -4.12 -20.67 16 24 C 0.00 0.12 8.58 127.69 1.10 1.21 16 25 C 0.05 1.14 4.79 86.30 0.41 1.56 16 26 C 0.08 1.67 7.11 71.98 0.51 2.18 16 27 O -0.59 -14.56 13.61 -148.98 -2.03 -16.59 16 28 H 0.09 2.14 6.53 -2.39 -0.02 2.12 16 29 H 0.07 2.19 5.86 -2.39 -0.01 2.18 16 30 H 0.07 1.84 6.66 -2.39 -0.02 1.83 16 31 H 0.03 1.62 6.25 -2.39 -0.01 1.61 16 32 H 0.06 2.73 4.21 -2.39 -0.01 2.72 16 33 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.18 7.05 4.54 -60.91 -0.28 6.77 16 35 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 36 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.13 5.35 6.13 -2.91 -0.02 5.33 16 38 H 0.08 2.77 5.06 -2.39 -0.01 2.76 16 39 H 0.08 1.80 6.21 -2.39 -0.01 1.78 16 40 H 0.03 0.79 6.39 -2.39 -0.02 0.77 16 41 H 0.07 1.91 8.00 -2.39 -0.02 1.89 16 42 H 0.07 1.43 6.83 -2.39 -0.02 1.41 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.00 6.26 -2.39 -0.01 0.98 16 45 H 0.39 5.61 9.12 -74.05 -0.68 4.93 16 Total: -1.00 -60.92 356.29 0.92 -60.00 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.11 Total: 31.37 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 5.61 Total: -0.62 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -5.54 Total: -92.36 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.06 Total: -38.37 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.76 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -60.92 0.92 -60.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270670888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.136 kcal (2) G-P(sol) polarization free energy of solvation -60.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds