Wall clock time and date at job start Sat Apr 11 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99815 * 2 1 4 4 C 1.46900 * 110.99948 * 123.95085 * 2 1 3 5 5 C 1.53000 * 109.46894 * 169.99991 * 4 2 1 6 6 C 1.53001 * 109.47120 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47003 * 180.02562 * 6 5 4 8 8 C 1.46496 * 120.00273 * 90.00285 * 7 6 5 9 9 C 1.50698 * 109.47623 * 83.72413 * 8 7 6 10 10 H 1.07998 * 119.99568 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00491 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99997 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99681 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46674 * 90.00183 * 13 11 9 15 15 H 1.48499 * 109.46906 * 209.99866 * 13 11 9 16 16 H 1.48497 * 109.46999 * 330.00335 * 13 11 9 17 17 C 1.34775 * 119.99929 * 269.99762 * 7 6 5 18 18 O 1.21591 * 119.99890 * 5.46121 * 17 7 6 19 19 C 1.47540 * 120.00352 * 185.46231 * 17 7 6 20 20 C 1.39725 * 120.17693 * 52.38379 * 19 17 7 21 21 C 1.37987 * 119.87928 * 179.81717 * 20 19 17 22 22 F 1.35095 * 119.87414 * 180.21123 * 21 20 19 23 23 C 1.38726 * 120.24909 * 0.44279 * 21 20 19 24 24 C 1.38061 * 120.36531 * 359.78832 * 23 21 20 25 25 C 1.38693 * 120.11251 * 359.97438 * 24 23 21 26 26 O 1.35696 * 120.12283 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47180 * 296.04640 * 1 2 3 28 28 H 1.08995 * 109.47257 * 56.04919 * 1 2 3 29 29 H 1.08999 * 109.46869 * 176.04933 * 1 2 3 30 30 H 1.08996 * 109.46963 * 183.95410 * 3 2 1 31 31 H 1.08996 * 109.46963 * 303.95630 * 3 2 1 32 32 H 1.08997 * 109.46941 * 63.95209 * 3 2 1 33 33 H 1.09004 * 109.46804 * 50.00727 * 4 2 1 34 34 H 1.08993 * 109.47698 * 290.00148 * 4 2 1 35 35 H 1.09003 * 109.47237 * 60.00431 * 5 4 2 36 36 H 1.08998 * 109.47606 * 300.00071 * 5 4 2 37 37 H 1.08994 * 109.47103 * 60.00016 * 6 5 4 38 38 H 1.09005 * 109.47143 * 299.99838 * 6 5 4 39 39 H 1.08997 * 109.47630 * 203.72643 * 8 7 6 40 40 H 1.09006 * 109.46704 * 323.72530 * 8 7 6 41 41 H 0.97001 * 119.99774 * 180.02562 * 12 11 9 42 42 H 1.08001 * 120.06145 * 0.02562 * 20 19 17 43 43 H 1.07990 * 119.81779 * 179.77019 * 23 21 20 44 44 H 1.07993 * 119.94430 * 179.97438 * 24 23 21 45 45 H 0.96698 * 113.99942 * 270.02287 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9553 0.9703 6 6 4.0527 -1.7535 2.1549 7 7 5.4976 -1.9343 1.9950 8 6 6.4253 -0.9446 2.5481 9 6 6.6677 -1.2424 4.0053 10 1 6.1798 -2.0849 4.4726 11 6 7.5123 -0.4392 4.7420 12 7 7.7241 -0.6995 6.0136 13 14 8.3567 1.0177 3.9334 14 1 7.4992 2.2228 4.0659 15 1 9.6623 1.2638 4.5969 16 1 8.5799 0.7247 2.4949 17 6 5.9735 -3.0112 1.3391 18 8 5.2049 -3.7802 0.7947 19 6 7.4272 -3.2572 1.2817 20 6 8.1827 -3.2796 2.4569 21 6 9.5411 -3.5139 2.3964 22 9 10.2708 -3.5398 3.5330 23 6 10.1612 -3.7184 1.1724 24 6 9.4254 -3.6937 0.0045 25 6 8.0582 -3.4644 0.0482 26 8 7.3348 -3.4396 -1.0996 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0827 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8524 32 1 1.7043 1.8723 0.9233 33 1 1.5090 -1.7407 1.1756 34 1 1.7975 -0.2248 2.0628 35 1 3.9909 0.0194 0.9323 36 1 3.7024 -1.4965 0.0452 37 1 3.5662 -2.7282 2.1925 38 1 3.8547 -1.2126 3.0803 39 1 7.3700 -0.9893 2.0062 40 1 5.9956 0.0521 2.4475 41 1 8.3180 -0.1342 6.5320 42 1 7.7037 -3.1170 3.4111 43 1 11.2254 -3.8975 1.1328 44 1 9.9151 -3.8533 -0.9447 45 1 7.2689 -2.5637 -1.5042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271228795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:15 Heat of formation + Delta-G solvation = -86.300394 kcal Electronic energy + Delta-G solvation = -28415.912660 eV Core-core repulsion = 24348.596928 eV Total energy + Delta-G solvation = -4067.315732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.41578 -40.11178 -38.42200 -37.54461 -36.27541 -35.28840 -33.01850 -31.98838 -30.68652 -29.02605 -28.11044 -27.64407 -26.17968 -23.82942 -22.75114 -22.55900 -21.86885 -20.71308 -19.12844 -18.14909 -17.19129 -17.07793 -16.53535 -16.05517 -15.71566 -15.48875 -15.22006 -15.04335 -14.94232 -14.72503 -14.35900 -13.95931 -13.85135 -13.59108 -13.31877 -13.10106 -12.63949 -12.46107 -12.44339 -12.20398 -12.07344 -11.84154 -11.70120 -11.55388 -11.46419 -11.34155 -11.21151 -11.02441 -10.77968 -10.48674 -10.37066 -10.20036 -9.71419 -9.29413 -8.82805 -8.73186 -8.39905 -8.21148 -7.86452 -6.32092 -4.33751 1.10415 1.41338 3.10638 3.15471 3.18761 3.21058 3.56885 3.81494 4.00086 4.18349 4.33579 4.58838 4.91097 4.97968 5.02349 5.09148 5.11799 5.22852 5.29941 5.33639 5.48908 5.58892 5.61747 5.62606 5.71823 5.75045 5.80533 5.92107 5.93348 6.08882 6.13720 6.25128 6.32553 6.40850 6.44181 6.51317 6.59877 6.61949 6.98282 7.00622 7.08546 7.23330 7.34857 7.78635 7.97495 8.29710 8.68623 8.78943 9.26797 10.79394 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.004795 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.398458 B = 5838.221250 C = 7550.799871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.021 3.979 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.584 5.584 8 C 0.206 3.794 9 C -0.547 4.547 10 H 0.082 0.918 11 C 0.083 3.917 12 N -0.881 5.881 13 Si 0.865 3.135 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.264 1.264 17 C 0.563 3.437 18 O -0.542 6.542 19 C -0.121 4.121 20 C -0.082 4.082 21 C 0.082 3.918 22 F -0.134 7.134 23 C -0.128 4.128 24 C -0.136 4.136 25 C 0.131 3.869 26 O -0.483 6.483 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.268 0.732 42 H 0.179 0.821 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 1.656 -11.204 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.070 4.070 5 C -0.168 4.168 6 C 0.000 4.000 7 N -0.314 5.314 8 C 0.085 3.915 9 C -0.585 4.585 10 H 0.100 0.900 11 C -0.122 4.122 12 N -0.517 5.517 13 Si 0.691 3.309 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.188 1.188 17 C 0.350 3.650 18 O -0.420 6.420 19 C -0.124 4.124 20 C -0.101 4.101 21 C 0.062 3.938 22 F -0.113 7.113 23 C -0.147 4.147 24 C -0.155 4.155 25 C 0.086 3.914 26 O -0.292 6.292 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.196 0.804 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.333 0.510 -11.580 12.061 hybrid contribution 0.551 1.926 0.720 2.129 sum -2.782 2.435 -10.859 11.472 Atomic orbital electron populations 1.22366 0.87602 1.02175 1.00202 1.61975 1.07560 1.13930 1.43736 1.22435 1.01395 0.88740 1.00147 1.22076 0.95887 0.98105 0.90928 1.21945 0.93871 1.00846 1.00141 1.21258 0.80415 1.00640 0.97701 1.47831 1.06838 1.23171 1.53525 1.19876 0.88722 0.87566 0.95372 1.21302 1.29081 1.15402 0.92697 0.89991 1.24827 0.95752 0.97058 0.94547 1.69870 1.36188 1.38699 1.06987 0.87006 0.79909 0.83574 0.80392 1.19830 1.20640 1.18808 1.17943 0.87148 0.81265 0.78652 1.90747 1.58243 1.47078 1.45966 1.20131 0.94723 1.04346 0.93224 1.22113 0.92085 0.94463 1.01433 1.17579 0.89799 1.04191 0.82208 1.91522 1.76943 1.94015 1.48781 1.21085 1.00791 1.01951 0.90890 1.21040 0.92479 1.03351 0.98597 1.18397 0.89199 0.98838 0.85012 1.84826 1.73214 1.34602 1.36595 0.95799 0.91627 0.91373 0.90912 0.91755 0.95644 0.90610 0.94592 0.91941 0.90814 0.90694 0.89968 0.94711 0.95293 0.92138 0.80362 0.84571 0.84458 0.75732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 60.06 0.57 0.82 16 2 N -0.55 -6.75 5.02 -251.27 -1.26 -8.01 16 3 C 0.02 0.23 9.32 60.07 0.56 0.79 16 4 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 5 C -0.13 -1.93 5.46 -26.73 -0.15 -2.08 16 6 C 0.12 2.13 5.38 -4.04 -0.02 2.11 16 7 N -0.58 -11.51 2.46 -176.29 -0.43 -11.94 16 8 C 0.21 4.35 3.74 -5.20 -0.02 4.33 16 9 C -0.55 -13.46 7.23 -34.44 -0.25 -13.71 16 10 H 0.08 2.24 7.89 -52.49 -0.41 1.83 16 11 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 12 N -0.88 -24.52 13.96 55.43 0.77 -23.75 16 13 Si 0.86 19.33 27.47 -169.99 -4.67 14.66 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 17 C 0.56 11.57 6.83 -12.47 -0.09 11.48 16 18 O -0.54 -12.23 16.33 0.10 0.00 -12.23 16 19 C -0.12 -2.31 4.54 -104.85 -0.48 -2.79 16 20 C -0.08 -1.63 7.82 -39.12 -0.31 -1.93 16 21 C 0.08 1.47 7.28 -39.49 -0.29 1.18 16 22 F -0.13 -2.57 17.26 2.25 0.04 -2.53 16 23 C -0.13 -1.86 10.01 -39.47 -0.39 -2.26 16 24 C -0.14 -1.90 9.97 -39.48 -0.39 -2.29 16 25 C 0.13 2.17 6.70 -38.71 -0.26 1.91 16 26 O -0.48 -7.43 12.65 -23.97 -0.30 -7.73 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 31 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 34 H 0.04 0.46 8.12 -51.93 -0.42 0.03 16 35 H 0.06 0.93 6.55 -51.93 -0.34 0.59 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.32 7.50 -51.93 -0.39 0.93 16 38 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.04 0.74 5.31 -51.93 -0.28 0.47 16 40 H 0.03 0.60 7.55 -51.93 -0.39 0.21 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.18 4.01 5.37 -52.49 -0.28 3.73 16 43 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.39 4.17 9.06 45.56 0.41 4.58 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -30.30 373.36 -7.67 -37.97 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.82 Total: 7.57 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.62 Total: 0.37 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.92 Total: -43.70 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.30 Total: -19.97 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.67 Total: 14.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.30 -7.67 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271228795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.331 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds