Wall clock time and date at job start Sat Apr 11 2020 01:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47357 * 2 1 4 4 C 1.46501 * 119.99615 * 270.00535 * 3 2 1 5 5 C 1.50708 * 109.46995 * 269.99232 * 4 3 2 6 6 H 1.07995 * 119.99496 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99854 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00498 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99336 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46759 * 90.00530 * 9 7 5 11 11 H 1.48498 * 109.46832 * 209.99977 * 9 7 5 12 12 H 1.48497 * 109.47369 * 329.99966 * 9 7 5 13 13 C 1.34774 * 120.00398 * 89.99452 * 3 2 1 14 14 O 1.21593 * 120.00065 * 180.02562 * 13 3 2 15 15 N 1.34776 * 119.99702 * 0.28610 * 13 3 2 16 16 C 1.40280 * 119.99990 * 173.78812 * 15 13 3 17 17 C 1.38683 * 120.06088 * 335.29714 * 16 15 13 18 18 C 1.38213 * 120.00880 * 179.74755 * 17 16 15 19 19 C 1.38473 * 120.13416 * 0.56232 * 18 17 16 20 20 F 1.35102 * 119.93799 * 179.72401 * 19 18 17 21 21 C 1.38431 * 120.12333 * 359.69042 * 19 18 17 22 22 C 1.38535 * 119.99440 * 0.03325 * 21 19 18 23 23 O 1.35977 * 120.06970 * 179.97438 * 22 21 19 24 24 C 1.42894 * 117.00091 * 5.63560 * 23 22 21 25 25 C 1.53002 * 109.47155 * 145.66822 * 24 23 22 26 26 C 1.52997 * 109.47366 * 265.66707 * 24 23 22 27 27 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47219 * 300.00082 * 1 2 3 29 29 H 1.08997 * 109.47266 * 60.00357 * 1 2 3 30 30 H 1.09000 * 109.47219 * 239.99917 * 2 1 3 31 31 H 1.09002 * 109.47706 * 119.99803 * 2 1 3 32 32 H 1.08995 * 109.47994 * 29.99167 * 4 3 2 33 33 H 1.09000 * 109.47311 * 149.99927 * 4 3 2 34 34 H 0.97000 * 120.00560 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00078 * 353.77923 * 15 13 3 36 36 H 1.08003 * 120.00023 * 0.02907 * 17 16 15 37 37 H 1.08000 * 119.93219 * 180.27731 * 18 17 16 38 38 H 1.08008 * 120.00321 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.47235 * 25.67170 * 24 23 22 40 40 H 1.08998 * 109.47270 * 59.99979 * 25 24 23 41 41 H 1.09000 * 109.47265 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47547 * 299.99883 * 25 24 23 43 43 H 1.09000 * 109.47322 * 300.00410 * 26 24 23 44 44 H 1.08998 * 109.47002 * 59.99804 * 26 24 23 45 45 H 1.09000 * 109.47307 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7039 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3905 -2.8776 8 7 3.3496 3.1273 -3.6172 9 14 5.9134 2.0963 -3.4171 10 1 5.9759 0.8758 -4.2608 11 1 6.3929 3.2639 -4.1994 12 1 6.7735 1.9155 -2.2202 13 6 2.2429 2.0167 1.1671 14 8 2.6478 3.1632 1.1671 15 7 2.0237 1.3795 2.3343 16 6 2.3795 1.9917 3.5453 17 6 3.3755 2.9564 3.5697 18 6 3.7216 3.5626 4.7626 19 6 3.0837 3.2006 5.9371 20 9 3.4290 3.7918 7.1017 21 6 2.0923 2.2346 5.9200 22 6 1.7373 1.6276 4.7263 23 8 0.7641 0.6782 4.7078 24 6 0.0638 0.4430 5.9311 25 6 -1.3933 0.0910 5.6250 26 6 0.7221 -0.7170 6.6807 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0285 33 1 2.0955 3.1410 -1.1385 34 1 3.6756 3.5177 -4.4432 35 1 1.6197 0.4975 2.3371 36 1 3.8777 3.2373 2.6557 37 1 4.4944 4.3169 4.7794 38 1 1.5957 1.9540 6.8372 39 1 0.0988 1.3409 6.5481 40 1 -1.4283 -0.8068 5.0079 41 1 -1.9276 -0.0879 6.5581 42 1 -1.8624 0.9174 5.0910 43 1 0.6871 -1.6148 6.0636 44 1 1.7602 -0.4662 6.8987 45 1 0.1876 -0.8966 7.6135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272555307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:19 Heat of formation + Delta-G solvation = -80.127977 kcal Electronic energy + Delta-G solvation = -28103.786498 eV Core-core repulsion = 24036.738422 eV Total energy + Delta-G solvation = -4067.048076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.82458 -40.76223 -39.50356 -37.53212 -35.42443 -34.37407 -33.31844 -32.66722 -30.32863 -30.11451 -28.86794 -27.58542 -26.74145 -23.96518 -23.20739 -23.04649 -21.93446 -21.15787 -19.36733 -18.82659 -17.79437 -16.96741 -16.66700 -16.37041 -15.82175 -15.79544 -15.31332 -15.09961 -14.80871 -14.61734 -14.36987 -14.18038 -13.68884 -13.45130 -13.32389 -13.28601 -12.93692 -12.76351 -12.58480 -12.43474 -12.15484 -12.04616 -11.92080 -11.72034 -11.45202 -11.20841 -11.08456 -10.93146 -10.84942 -10.79652 -10.54115 -10.14898 -10.05405 -9.65447 -9.23875 -8.63414 -8.43436 -7.84427 -7.43707 -6.04123 -4.08862 1.21029 1.30271 2.90331 3.15118 3.30486 3.37516 3.42346 3.51469 3.99383 4.27455 4.35686 4.46112 4.49372 4.59034 4.64960 4.83425 5.01511 5.04487 5.21342 5.26694 5.29948 5.35415 5.40351 5.45774 5.51619 5.58263 5.69126 5.75403 5.84024 5.85829 5.97572 6.02146 6.16635 6.20277 6.42960 6.46010 6.65286 6.79127 6.93197 7.34286 7.35797 7.50198 7.66669 7.93721 8.22989 8.56334 8.91830 9.20721 9.56574 11.03702 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.003568 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.646213 B = 7845.840713 C = 9297.812920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.604 5.604 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.699 3.301 14 O -0.569 6.569 15 N -0.684 5.684 16 C 0.152 3.848 17 C -0.072 4.072 18 C -0.162 4.162 19 C 0.101 3.899 20 F -0.144 7.144 21 C -0.227 4.227 22 C 0.116 3.884 23 O -0.306 6.306 24 C 0.074 3.926 25 C -0.151 4.151 26 C -0.175 4.175 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.407 0.593 36 H 0.170 0.830 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -8.253 19.691 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.338 5.338 4 C 0.141 3.859 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.401 3.599 14 O -0.446 6.446 15 N -0.333 5.333 16 C 0.055 3.945 17 C -0.093 4.093 18 C -0.181 4.181 19 C 0.081 3.919 20 F -0.122 7.122 21 C -0.247 4.247 22 C 0.068 3.932 23 O -0.221 6.221 24 C 0.018 3.982 25 C -0.208 4.208 26 C -0.233 4.233 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.244 0.756 36 H 0.187 0.813 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.570 -7.447 19.233 21.970 hybrid contribution 0.766 -0.484 0.090 0.911 sum -6.804 -7.931 19.323 21.968 Atomic orbital electron populations 1.22247 0.96636 1.01517 1.02555 1.21392 0.93619 0.84280 1.02584 1.47621 1.66840 1.13202 1.06181 1.19244 0.96242 0.93534 0.76860 1.21454 0.96963 1.31880 1.06273 0.92432 1.24917 0.97816 0.94900 0.96392 1.69924 1.35709 1.33380 1.14341 0.86505 0.84725 0.77642 0.78591 1.20699 1.21109 1.19890 1.15921 0.79337 0.84607 0.80049 1.90842 1.51886 1.16437 1.85471 1.42844 1.65751 1.21394 1.03261 1.16988 0.96232 0.98169 0.83152 1.21401 0.94188 0.94319 0.99343 1.21011 1.02943 1.03413 0.90771 1.17297 0.97617 0.95464 0.81568 1.91466 1.91371 1.82679 1.46714 1.20809 1.03118 1.02593 0.98191 1.18253 0.90788 0.91911 0.92290 1.86095 1.46933 1.53305 1.35741 1.22495 0.92185 0.98631 0.84850 1.21903 0.93171 1.03073 1.02700 1.22304 1.01519 0.98929 1.00509 0.92073 0.93007 0.91820 0.89450 0.92325 0.94794 0.93663 0.92711 0.75607 0.81298 0.84438 0.84150 0.90513 0.91357 0.90659 0.91585 0.91325 0.91872 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.67 5.85 -4.04 -0.02 1.64 16 3 N -0.60 -12.59 2.46 -180.80 -0.44 -13.04 16 4 C 0.26 6.67 5.16 -5.19 -0.03 6.64 16 5 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.70 14.70 8.08 -86.92 -0.70 14.00 16 14 O -0.57 -14.06 13.10 5.28 0.07 -13.99 16 15 N -0.68 -11.47 5.12 -14.08 -0.07 -11.54 16 16 C 0.15 2.45 6.45 -83.44 -0.54 1.92 16 17 C -0.07 -1.20 8.72 -39.43 -0.34 -1.54 16 18 C -0.16 -2.31 10.02 -39.50 -0.40 -2.71 16 19 C 0.10 1.36 7.30 -39.42 -0.29 1.07 16 20 F -0.14 -1.90 17.26 2.25 0.04 -1.86 16 21 C -0.23 -2.80 8.90 -39.40 -0.35 -3.15 16 22 C 0.12 1.57 6.69 -39.09 -0.26 1.30 16 23 O -0.31 -3.63 9.19 -19.67 -0.18 -3.81 16 24 C 0.07 0.63 2.83 -26.73 -0.08 0.56 16 25 C -0.15 -1.06 9.56 37.16 0.36 -0.71 16 26 C -0.18 -1.24 9.51 37.16 0.35 -0.89 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.06 0.78 6.45 -51.93 -0.33 0.45 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.41 5.83 6.16 -40.82 -0.25 5.58 16 36 H 0.17 3.26 5.79 -52.48 -0.30 2.96 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.14 1.39 5.86 -52.48 -0.31 1.08 16 39 H 0.08 0.62 5.72 -51.93 -0.30 0.32 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -31.95 376.38 -8.03 -39.98 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.49 Total: 4.57 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.34 Total: 2.90 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.22 Total: -50.11 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.11 Total: -17.80 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.95 -8.03 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272555307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.152 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds