Wall clock time and date at job start Sat Apr 11 2020 01:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 O 1.42904 * 109.46741 * 119.99627 * 2 1 3 5 5 C 1.35980 * 116.99585 * 154.95073 * 4 2 1 6 6 C 1.38538 * 120.07189 * 5.43236 * 5 4 2 7 7 C 1.38430 * 119.99429 * 180.27632 * 6 5 4 8 8 F 1.35100 * 119.93838 * 179.97438 * 7 6 5 9 9 C 1.38466 * 120.12340 * 0.02562 * 7 6 5 10 10 C 1.38214 * 120.13831 * 359.97438 * 9 7 6 11 11 C 1.38684 * 120.00329 * 0.02562 * 10 9 7 12 12 N 1.40288 * 120.05733 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99975 * 331.54115 * 12 11 10 14 14 O 1.21598 * 120.00507 * 3.64466 * 13 12 11 15 15 N 1.34784 * 120.00015 * 183.64784 * 13 12 11 16 16 C 1.46504 * 119.99525 * 359.97438 * 15 13 12 17 17 C 1.46496 * 120.00023 * 179.97438 * 15 13 12 18 18 H 1.09000 * 109.47105 * 359.97438 * 17 15 13 19 19 C 1.52998 * 109.47162 * 120.00296 * 17 15 13 20 20 C 1.50705 * 109.46891 * 240.00045 * 17 15 13 21 21 H 1.07999 * 120.00019 * 359.97438 * 20 17 15 22 22 C 1.37875 * 119.99628 * 180.02562 * 20 17 15 23 23 N 1.31512 * 120.00274 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 119.99929 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.46959 * 89.99954 * 24 22 20 26 26 H 1.48494 * 109.47374 * 210.00123 * 24 22 20 27 27 H 1.48504 * 109.47291 * 330.00009 * 24 22 20 28 28 H 1.09002 * 109.47002 * 300.00620 * 1 2 3 29 29 H 1.09006 * 109.46599 * 60.00279 * 1 2 3 30 30 H 1.09001 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47413 * 239.99538 * 2 1 3 32 32 H 1.09000 * 109.47620 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47323 * 299.99913 * 3 2 1 34 34 H 1.09001 * 109.47319 * 59.99341 * 3 2 1 35 35 H 1.08002 * 120.00200 * 0.25281 * 6 5 4 36 36 H 1.08010 * 119.93439 * 179.97438 * 9 7 6 37 37 H 1.08001 * 119.99503 * 179.97438 * 10 9 7 38 38 H 0.97002 * 119.99618 * 151.53787 * 12 11 10 39 39 H 1.08999 * 109.46748 * 90.00131 * 16 15 13 40 40 H 1.09002 * 109.46708 * 209.99993 * 16 15 13 41 41 H 1.08991 * 109.47394 * 329.99966 * 16 15 13 42 42 H 1.09002 * 109.47277 * 59.99273 * 19 17 15 43 43 H 1.08993 * 109.47520 * 179.97438 * 19 17 15 44 44 H 1.09001 * 109.46602 * 299.99697 * 19 17 15 45 45 H 0.97006 * 119.99953 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2469 -1.2259 1.0976 6 6 4.0339 -1.0265 -0.0250 7 6 5.2944 -1.5943 -0.0962 8 9 6.0607 -1.3994 -1.1917 9 6 5.7709 -2.3624 0.9527 10 6 4.9902 -2.5648 2.0751 11 6 3.7266 -1.9986 2.1523 12 7 2.9330 -2.2038 3.2909 13 6 3.0780 -3.3282 4.0196 14 8 3.9413 -4.1338 3.7293 15 7 2.2660 -3.5598 5.0701 16 6 1.2261 -2.5889 5.4201 17 6 2.4232 -4.7823 5.8619 18 1 3.2405 -5.3769 5.4538 19 6 2.7357 -4.4131 7.3134 20 6 1.1466 -5.5816 5.8105 21 1 0.3025 -5.2154 5.2451 22 6 1.0561 -6.7800 6.4864 23 7 2.0837 -7.2257 7.1754 24 14 -0.5264 -7.7705 6.4234 25 1 -0.4781 -8.7079 5.2726 26 1 -0.6786 -8.5412 7.6835 27 1 -1.6807 -6.8499 6.2638 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.6639 -0.4283 -0.8446 36 1 6.7547 -2.8043 0.8937 37 1 5.3640 -3.1647 2.8918 38 1 2.2800 -1.5363 3.5536 39 1 0.3067 -2.8339 4.8884 40 1 1.0446 -2.6224 6.4944 41 1 1.5534 -1.5883 5.1380 42 1 1.9181 -3.8186 7.7213 43 1 2.8522 -5.3226 7.9027 44 1 3.6590 -3.8350 7.3505 45 1 2.0198 -8.0686 7.6512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272598946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:24 Heat of formation + Delta-G solvation = -75.002703 kcal Electronic energy + Delta-G solvation = -28071.644851 eV Core-core repulsion = 24004.819024 eV Total energy + Delta-G solvation = -4066.825827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.84809 -40.76782 -39.50650 -37.55087 -35.50923 -34.37744 -33.30390 -32.72537 -30.35475 -29.62892 -28.15991 -27.56267 -26.18297 -25.20779 -23.89090 -22.72626 -21.45533 -20.90657 -19.22891 -18.76521 -17.79411 -17.02763 -16.69635 -16.23420 -15.84221 -15.78227 -15.34314 -15.16187 -14.84517 -14.63823 -14.43189 -14.22232 -13.49700 -13.34130 -13.24896 -13.00349 -12.81680 -12.64256 -12.62368 -12.52273 -12.10824 -11.87935 -11.58173 -11.55270 -11.44644 -11.14630 -11.05363 -10.85872 -10.83194 -10.70881 -10.25516 -10.16537 -10.06162 -9.29690 -9.15579 -8.65776 -8.42884 -7.82533 -7.42924 -6.07442 -4.15033 1.18694 1.28593 2.90570 3.13951 3.27641 3.34307 3.36511 3.49593 3.95791 4.26544 4.34843 4.47957 4.51097 4.59389 4.67346 4.81473 5.00779 5.02466 5.22283 5.23923 5.35247 5.40206 5.47838 5.50059 5.61113 5.76684 5.84522 5.85393 5.98640 6.00879 6.16442 6.24444 6.38976 6.62499 6.70349 6.78726 6.91127 6.98768 7.13492 7.33820 7.45207 7.69001 7.81203 8.05112 8.20545 8.61090 8.85602 9.17006 9.51816 10.97892 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003336 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.845801 B = 8390.256186 C = 9344.207518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 C -0.181 4.181 4 O -0.306 6.306 5 C 0.120 3.880 6 C -0.228 4.228 7 C 0.103 3.897 8 F -0.143 7.143 9 C -0.165 4.165 10 C -0.070 4.070 11 C 0.148 3.852 12 N -0.684 5.684 13 C 0.698 3.302 14 O -0.581 6.581 15 N -0.602 5.602 16 C 0.087 3.913 17 C 0.272 3.728 18 H 0.066 0.934 19 C -0.148 4.148 20 C -0.525 4.525 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.888 5.888 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.275 1.275 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.171 0.829 38 H 0.407 0.593 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.030 0.970 43 H 0.095 0.905 44 H 0.012 0.988 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 17.334 -12.298 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.238 4.238 4 O -0.220 6.220 5 C 0.072 3.928 6 C -0.248 4.248 7 C 0.083 3.917 8 F -0.122 7.122 9 C -0.185 4.185 10 C -0.091 4.091 11 C 0.051 3.949 12 N -0.332 5.332 13 C 0.400 3.600 14 O -0.459 6.459 15 N -0.336 5.336 16 C -0.057 4.057 17 C 0.172 3.828 18 H 0.084 0.916 19 C -0.206 4.206 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.188 0.812 38 H 0.245 0.755 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.113 0.887 44 H 0.031 0.969 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.517 16.537 -12.135 20.518 hybrid contribution -1.146 -0.065 -0.356 1.202 sum -0.629 16.472 -12.492 20.682 Atomic orbital electron populations 1.21858 0.92265 1.03471 1.03021 1.22450 0.95539 0.92484 0.87394 1.22400 1.02255 0.95976 1.03185 1.86110 1.28667 1.68372 1.38842 1.18307 0.85231 0.96595 0.92663 1.20855 0.95256 1.08580 1.00105 1.17317 0.89636 1.00226 0.84552 1.91467 1.74844 1.93819 1.52076 1.21019 1.01991 1.01872 0.93584 1.21457 0.90425 0.97953 0.99242 1.16996 0.91415 0.99812 0.86715 1.42790 1.41669 1.22125 1.26655 1.15964 0.82830 0.80811 0.80416 1.90800 1.36893 1.47054 1.71193 1.47604 1.32524 1.24013 1.29413 1.21510 0.91517 0.90104 1.02563 1.18916 0.98369 0.78910 0.86612 0.91605 1.22119 0.96627 1.01885 1.00017 1.21328 0.98915 1.05054 1.31122 0.92302 1.24874 0.96664 0.97170 0.95022 1.69874 1.29753 1.20984 1.32005 0.86492 0.83276 0.80112 0.77474 1.20620 1.21133 1.19960 0.91333 0.90562 0.91410 0.90813 0.91749 0.91031 0.91297 0.84156 0.84465 0.81237 0.75544 0.93145 0.90351 0.93647 0.95111 0.88659 0.96877 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.76 16 2 C 0.08 0.69 2.85 -26.73 -0.08 0.61 16 3 C -0.18 -1.31 9.17 37.16 0.34 -0.97 16 4 O -0.31 -3.73 9.27 -19.68 -0.18 -3.91 16 5 C 0.12 1.63 6.62 -39.09 -0.26 1.38 16 6 C -0.23 -2.80 8.23 -39.40 -0.32 -3.13 16 7 C 0.10 1.36 7.30 -39.43 -0.29 1.08 16 8 F -0.14 -1.87 17.26 2.25 0.04 -1.83 16 9 C -0.17 -2.27 10.02 -39.51 -0.40 -2.67 16 10 C -0.07 -1.12 8.75 -39.43 -0.35 -1.47 16 11 C 0.15 2.35 6.43 -83.44 -0.54 1.82 16 12 N -0.68 -11.40 5.14 -14.08 -0.07 -11.47 16 13 C 0.70 14.59 8.16 -86.92 -0.71 13.88 16 14 O -0.58 -13.98 12.75 5.28 0.07 -13.91 16 15 N -0.60 -12.71 2.75 -181.00 -0.50 -13.21 16 16 C 0.09 1.44 9.47 59.85 0.57 2.01 16 17 C 0.27 6.85 2.64 -69.08 -0.18 6.67 16 18 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 19 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 20 C -0.53 -14.10 8.37 -34.44 -0.29 -14.39 16 21 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 22 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 24 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.63 6.31 -51.93 -0.33 0.30 16 32 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.14 1.40 5.43 -52.49 -0.28 1.11 16 36 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.17 3.05 5.74 -52.49 -0.30 2.75 16 38 H 0.41 5.81 6.13 -40.82 -0.25 5.56 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.29 6.43 -51.93 -0.33 0.96 16 41 H 0.04 0.59 6.31 -51.93 -0.33 0.26 16 42 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 43 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -30.57 365.04 -7.56 -38.13 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.12 Total: 6.40 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.90 Total: 2.59 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.06 Total: -48.93 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.12 Total: -17.82 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.57 -7.56 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272598946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.872 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds