Wall clock time and date at job start Sat Apr 11 2020 01:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 O 1.42904 * 109.46741 * 119.99627 * 2 1 3 5 5 C 1.35980 * 116.99585 * 154.95073 * 4 2 1 6 6 C 1.38538 * 120.07189 * 5.43236 * 5 4 2 7 7 C 1.38430 * 119.99429 * 180.27632 * 6 5 4 8 8 F 1.35100 * 119.93838 * 179.97438 * 7 6 5 9 9 C 1.38466 * 120.12340 * 0.02562 * 7 6 5 10 10 C 1.38214 * 120.13831 * 359.97438 * 9 7 6 11 11 C 1.38684 * 120.00329 * 0.02562 * 10 9 7 12 12 N 1.40288 * 120.05733 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99975 * 331.54115 * 12 11 10 14 14 O 1.21598 * 120.00507 * 3.64466 * 13 12 11 15 15 N 1.34784 * 120.00015 * 183.64784 * 13 12 11 16 16 C 1.46504 * 119.99525 * 359.97438 * 15 13 12 17 17 C 1.46496 * 120.00023 * 179.97438 * 15 13 12 18 18 H 1.09000 * 109.47105 * 359.97438 * 17 15 13 19 19 C 1.52998 * 109.47162 * 120.00296 * 17 15 13 20 20 C 1.50705 * 109.46891 * 240.00045 * 17 15 13 21 21 H 1.07999 * 120.00019 * 359.97438 * 20 17 15 22 22 C 1.37875 * 119.99628 * 180.02562 * 20 17 15 23 23 N 1.31512 * 120.00274 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 119.99929 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.46959 * 89.99954 * 24 22 20 26 26 H 1.48494 * 109.47374 * 210.00123 * 24 22 20 27 27 H 1.48504 * 109.47291 * 330.00009 * 24 22 20 28 28 H 1.09002 * 109.47002 * 300.00620 * 1 2 3 29 29 H 1.09006 * 109.46599 * 60.00279 * 1 2 3 30 30 H 1.09001 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47413 * 239.99538 * 2 1 3 32 32 H 1.09000 * 109.47620 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47323 * 299.99913 * 3 2 1 34 34 H 1.09001 * 109.47319 * 59.99341 * 3 2 1 35 35 H 1.08002 * 120.00200 * 0.25281 * 6 5 4 36 36 H 1.08010 * 119.93439 * 179.97438 * 9 7 6 37 37 H 1.08001 * 119.99503 * 179.97438 * 10 9 7 38 38 H 0.97002 * 119.99618 * 151.53787 * 12 11 10 39 39 H 1.08999 * 109.46748 * 90.00131 * 16 15 13 40 40 H 1.09002 * 109.46708 * 209.99993 * 16 15 13 41 41 H 1.08991 * 109.47394 * 329.99966 * 16 15 13 42 42 H 1.09002 * 109.47277 * 59.99273 * 19 17 15 43 43 H 1.08993 * 109.47520 * 179.97438 * 19 17 15 44 44 H 1.09001 * 109.46602 * 299.99697 * 19 17 15 45 45 H 0.97006 * 119.99953 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2469 -1.2259 1.0976 6 6 4.0339 -1.0265 -0.0250 7 6 5.2944 -1.5943 -0.0962 8 9 6.0607 -1.3994 -1.1917 9 6 5.7709 -2.3624 0.9527 10 6 4.9902 -2.5648 2.0751 11 6 3.7266 -1.9986 2.1523 12 7 2.9330 -2.2038 3.2909 13 6 3.0780 -3.3282 4.0196 14 8 3.9413 -4.1338 3.7293 15 7 2.2660 -3.5598 5.0701 16 6 1.2261 -2.5889 5.4201 17 6 2.4232 -4.7823 5.8619 18 1 3.2405 -5.3769 5.4538 19 6 2.7357 -4.4131 7.3134 20 6 1.1466 -5.5816 5.8105 21 1 0.3025 -5.2154 5.2451 22 6 1.0561 -6.7800 6.4864 23 7 2.0837 -7.2257 7.1754 24 14 -0.5264 -7.7705 6.4234 25 1 -0.4781 -8.7079 5.2726 26 1 -0.6786 -8.5412 7.6835 27 1 -1.6807 -6.8499 6.2638 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.6639 -0.4283 -0.8446 36 1 6.7547 -2.8043 0.8937 37 1 5.3640 -3.1647 2.8918 38 1 2.2800 -1.5363 3.5536 39 1 0.3067 -2.8339 4.8884 40 1 1.0446 -2.6224 6.4944 41 1 1.5534 -1.5883 5.1380 42 1 1.9181 -3.8186 7.7213 43 1 2.8522 -5.3226 7.9027 44 1 3.6590 -3.8350 7.3505 45 1 2.0198 -8.0686 7.6512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272598946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:23 Heat of formation + Delta-G solvation = -92.275106 kcal Electronic energy + Delta-G solvation = -28072.393839 eV Core-core repulsion = 24004.819024 eV Total energy + Delta-G solvation = -4067.574815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.91128 -41.99519 -40.80897 -38.68153 -37.19942 -35.83046 -34.66178 -34.01433 -31.61661 -31.19565 -29.47235 -28.12965 -27.66937 -27.25367 -24.96076 -24.03454 -22.74868 -21.99567 -20.80425 -19.88511 -19.10345 -18.58315 -18.12578 -17.63432 -17.03238 -16.89774 -16.77794 -16.41279 -16.17621 -16.02411 -15.56684 -15.43111 -14.95656 -14.53863 -14.43016 -14.32443 -14.00282 -13.94795 -13.65139 -13.47270 -13.10409 -13.05617 -13.00369 -12.89834 -12.73028 -12.67849 -12.59452 -12.46768 -12.15936 -12.07708 -11.86286 -11.61236 -11.40715 -11.16195 -10.89607 -10.50013 -9.76710 -9.42145 -8.72930 -8.12697 -6.28754 0.03964 0.20110 1.42525 1.43672 1.53138 1.66106 2.04055 2.10051 2.42906 2.63837 3.02123 3.15475 3.20673 3.67028 3.83764 3.92759 3.99022 4.04465 4.17399 4.26549 4.33996 4.60265 4.62639 4.73251 4.76093 4.81511 4.88856 4.90862 4.91485 4.93118 5.00050 5.03141 5.10101 5.21373 5.26886 5.31261 5.39990 5.46587 5.54769 5.68582 5.75848 5.98534 6.16070 6.23774 6.33528 6.78293 7.05073 7.37729 7.60116 8.91451 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003336 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.845801 B = 8390.256186 C = 9344.207518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 C -0.177 4.177 4 O -0.315 6.315 5 C 0.133 3.867 6 C -0.218 4.218 7 C 0.108 3.892 8 F -0.139 7.139 9 C -0.168 4.168 10 C -0.085 4.085 11 C 0.118 3.882 12 N -0.666 5.666 13 C 0.693 3.307 14 O -0.622 6.622 15 N -0.610 5.610 16 C 0.084 3.916 17 C 0.278 3.722 18 H 0.014 0.986 19 C -0.133 4.133 20 C -0.538 4.538 21 H 0.058 0.942 22 C 0.017 3.983 23 N -0.916 5.916 24 Si 0.963 3.037 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.262 1.262 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.419 0.581 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.021 0.979 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 19.554 -13.949 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 C -0.234 4.234 4 O -0.230 6.230 5 C 0.084 3.916 6 C -0.238 4.238 7 C 0.088 3.912 8 F -0.117 7.117 9 C -0.187 4.187 10 C -0.105 4.105 11 C 0.022 3.978 12 N -0.316 5.316 13 C 0.395 3.605 14 O -0.503 6.503 15 N -0.343 5.343 16 C -0.058 4.058 17 C 0.176 3.824 18 H 0.032 0.968 19 C -0.192 4.192 20 C -0.577 4.577 21 H 0.077 0.923 22 C -0.183 4.183 23 N -0.555 5.555 24 Si 0.788 3.212 25 H -0.210 1.210 26 H -0.205 1.205 27 H -0.187 1.187 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.187 0.813 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.259 0.741 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.259 18.829 -13.810 23.385 hybrid contribution -0.571 -0.670 0.033 0.881 sum -1.830 18.160 -13.777 22.868 Atomic orbital electron populations 1.21893 0.91160 1.03050 1.04300 1.22820 0.96433 0.93233 0.86406 1.22381 1.01844 0.94849 1.04315 1.86119 1.27718 1.68369 1.40748 1.18203 0.85922 0.95523 0.91950 1.21095 0.94477 1.07926 1.00264 1.17352 0.89928 0.99660 0.84264 1.91484 1.74812 1.93704 1.51716 1.21099 1.02451 1.02067 0.93116 1.21239 0.91312 0.98531 0.99461 1.17191 0.91627 1.01632 0.87357 1.42440 1.41820 1.20903 1.26441 1.16116 0.82351 0.81486 0.80590 1.90780 1.38497 1.48788 1.72270 1.47460 1.33758 1.23771 1.29336 1.21737 0.90519 0.90779 1.02802 1.18495 0.96082 0.80197 0.87621 0.96800 1.21901 0.97740 1.00998 0.98559 1.21574 0.99300 1.05713 1.31081 0.92344 1.25684 0.99735 0.98177 0.94671 1.70013 1.31580 1.21328 1.32583 0.85486 0.79794 0.78582 0.77318 1.20999 1.20484 1.18654 0.91333 0.88037 0.92662 0.90121 0.92310 0.88697 0.91443 0.81321 0.83049 0.83960 0.74147 0.92701 0.90193 0.89849 0.93259 0.91180 0.95975 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.56 71.98 0.69 -1.09 16 2 C 0.07 0.98 2.85 30.59 0.09 1.07 16 3 C -0.18 -1.97 9.17 71.98 0.66 -1.31 16 4 O -0.32 -7.01 9.27 -93.32 -0.86 -7.87 16 5 C 0.13 3.40 6.62 22.59 0.15 3.55 16 6 C -0.22 -4.84 8.23 22.39 0.18 -4.65 16 7 C 0.11 2.67 7.30 22.37 0.16 2.84 16 8 F -0.14 -3.29 17.26 44.97 0.78 -2.51 16 9 C -0.17 -4.58 10.02 22.32 0.22 -4.35 16 10 C -0.08 -2.79 8.75 22.37 0.20 -2.60 16 11 C 0.12 3.75 6.43 38.14 0.25 4.00 16 12 N -0.67 -22.20 5.14 -316.73 -1.63 -23.82 16 13 C 0.69 29.81 8.16 179.05 1.46 31.27 16 14 O -0.62 -31.71 12.75 -4.03 -0.05 -31.76 16 15 N -0.61 -26.11 2.75 -844.83 -2.33 -28.44 16 16 C 0.08 2.66 9.47 127.77 1.21 3.87 16 17 C 0.28 14.48 2.64 44.25 0.12 14.60 16 18 H 0.01 0.87 6.90 -2.39 -0.02 0.85 16 19 C -0.13 -6.37 8.95 71.98 0.64 -5.72 16 20 C -0.54 -29.30 8.37 25.60 0.21 -29.09 16 21 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 22 C 0.02 0.93 5.30 84.65 0.45 1.38 16 23 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 24 Si 0.96 43.11 29.54 68.60 2.03 45.13 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.09 6.31 -2.39 -0.02 1.07 16 32 H 0.06 0.73 6.92 -2.39 -0.02 0.72 16 33 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.17 2.74 5.43 -2.91 -0.02 2.73 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.14 5.52 5.74 -2.91 -0.02 5.50 16 38 H 0.42 11.45 6.13 -92.71 -0.57 10.88 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 2.51 6.43 -2.39 -0.02 2.49 16 41 H 0.08 1.97 6.31 -2.39 -0.02 1.95 16 42 H 0.05 2.11 6.66 -2.39 -0.02 2.10 16 43 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -68.64 365.04 5.33 -63.32 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.46 Total: 24.59 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.69 Total: 13.75 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.71 Total: -104.64 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.92 Total: -39.64 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -68.64 5.33 -63.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272598946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.959 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds