Wall clock time and date at job start Sat Apr 11 2020 01:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99815 * 2 1 4 4 C 1.50703 * 109.46879 * 269.99660 * 3 2 1 5 5 H 1.07997 * 120.00249 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00027 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00233 * 180.02562 * 6 4 3 8 8 Si 1.86811 * 119.99996 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47100 * 90.00242 * 8 6 4 10 10 H 1.48495 * 109.46774 * 210.00342 * 8 6 4 11 11 H 1.48501 * 109.46726 * 330.00187 * 8 6 4 12 12 C 1.34775 * 119.99953 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99960 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00388 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47483 * 180.02562 * 14 12 2 16 16 N 1.46895 * 109.47312 * 180.02562 * 15 14 12 17 17 C 1.46897 * 111.00296 * 179.97438 * 16 15 14 18 18 H 1.09004 * 109.46772 * 325.00164 * 17 16 15 19 19 C 1.53006 * 109.47346 * 84.99422 * 17 16 15 20 20 O 1.42906 * 109.46752 * 65.00065 * 19 17 16 21 21 C 1.50699 * 109.47459 * 204.99681 * 17 16 15 22 22 C 1.38246 * 119.97250 * 319.72405 * 21 17 16 23 23 C 1.38194 * 120.02567 * 179.76492 * 22 21 17 24 24 C 1.38465 * 119.97135 * 0.50668 * 23 22 21 25 25 F 1.35101 * 120.02141 * 179.76570 * 24 23 22 26 26 C 1.38455 * 119.95070 * 359.74689 * 24 23 22 27 27 C 1.38204 * 119.97372 * 359.97438 * 26 24 23 28 28 H 1.08999 * 109.47186 * 269.99979 * 1 2 3 29 29 H 1.08993 * 109.46865 * 30.00488 * 1 2 3 30 30 H 1.09005 * 109.46553 * 150.00345 * 1 2 3 31 31 H 1.08998 * 109.47418 * 29.99737 * 3 2 1 32 32 H 1.09002 * 109.47230 * 150.00021 * 3 2 1 33 33 H 0.97004 * 120.00518 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47212 * 59.99724 * 14 12 2 35 35 H 1.08999 * 109.46932 * 300.00003 * 14 12 2 36 36 H 1.09003 * 109.47284 * 59.99569 * 15 14 12 37 37 H 1.08999 * 109.46876 * 299.99838 * 15 14 12 38 38 H 1.00910 * 110.99695 * 303.94841 * 16 15 14 39 39 H 1.08993 * 109.46955 * 185.00483 * 19 17 16 40 40 H 1.09000 * 109.47050 * 305.00312 * 19 17 16 41 41 H 0.96698 * 113.99404 * 180.02562 * 20 19 17 42 42 H 1.07998 * 119.98555 * 0.02562 * 22 21 17 43 43 H 1.07998 * 120.01555 * 180.25510 * 23 22 21 44 44 H 1.07993 * 120.01557 * 179.97438 * 26 24 23 45 45 H 1.08001 * 119.98498 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8773 -1.6729 7 7 3.3456 3.2572 -2.9128 8 14 3.7337 3.9288 -0.2530 9 1 5.1069 3.5070 0.1237 10 1 3.7496 5.3553 -0.6650 11 1 2.8271 3.7597 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6353 0.0018 16 7 1.6452 -4.9074 0.0012 17 6 2.5697 -6.0491 0.0018 18 1 3.4530 -5.8016 -0.5870 19 6 2.9874 -6.3664 1.4391 20 8 1.8469 -6.8030 2.1812 21 6 1.8855 -7.2498 -0.5992 22 6 0.5607 -7.5103 -0.3023 23 6 -0.0692 -8.6084 -0.8566 24 6 0.6303 -9.4538 -1.7013 25 9 0.0168 -10.5302 -2.2400 26 6 1.9586 -9.1948 -1.9937 27 6 2.5847 -8.0928 -1.4428 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8901 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8225 4.0831 -3.0901 34 1 0.7591 -2.5303 -0.8897 35 1 0.7585 -2.5299 0.8903 36 1 3.0057 -3.5771 0.8922 37 1 3.0070 -3.5779 -0.8877 38 1 1.0080 -4.9574 0.7820 39 1 3.7405 -7.1543 1.4330 40 1 3.4018 -5.4713 1.9030 41 1 2.0381 -7.0217 3.1035 42 1 0.0165 -6.8531 0.3597 43 1 -1.1053 -8.8095 -0.6279 44 1 2.5052 -9.8536 -2.6521 45 1 3.6207 -7.8904 -1.6711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273139355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:26 Heat of formation + Delta-G solvation = -100.185198 kcal Electronic energy + Delta-G solvation = -26722.235261 eV Core-core repulsion = 22654.317439 eV Total energy + Delta-G solvation = -4067.917822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.05506 -39.86757 -39.10812 -37.59265 -35.71727 -34.89240 -32.71006 -32.27110 -31.31943 -29.84407 -28.40688 -27.37111 -25.86808 -23.92350 -23.45257 -22.77107 -21.49247 -20.83826 -18.43463 -17.99414 -17.74475 -16.97438 -16.62641 -16.27699 -16.22669 -15.92123 -15.74176 -15.33188 -15.09782 -14.87976 -14.44650 -14.07898 -13.90692 -13.69681 -13.49920 -13.24844 -12.95064 -12.71366 -12.52575 -12.36371 -12.30404 -12.02266 -11.85195 -11.79206 -11.58120 -11.28779 -11.13971 -11.10975 -10.88161 -10.52733 -10.38369 -10.15575 -9.55128 -9.25840 -9.03589 -8.76118 -8.59789 -8.54381 -7.71345 -6.09236 -4.08069 0.96045 1.09582 3.27953 3.32493 3.34234 3.34917 3.35882 3.66501 3.89235 4.09057 4.23925 4.38640 4.44680 4.54776 4.69415 4.76104 5.01673 5.08049 5.08986 5.10977 5.16084 5.18591 5.25770 5.35517 5.40491 5.56946 5.70836 5.72832 5.84303 5.84955 5.94310 6.00437 6.07038 6.10736 6.18705 6.35605 6.68700 6.70813 6.85045 6.92607 7.19975 7.25648 7.32434 7.60282 8.23789 8.46443 8.91964 8.97747 9.50895 11.04175 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.002173 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.003766 B =12882.593731 C =13167.164944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.545 6.545 14 C -0.136 4.136 15 C 0.074 3.926 16 N -0.680 5.680 17 C 0.130 3.870 18 H 0.102 0.898 19 C 0.047 3.953 20 O -0.566 6.566 21 C -0.072 4.072 22 C -0.045 4.045 23 C -0.160 4.160 24 C 0.091 3.909 25 F -0.145 7.145 26 C -0.158 4.158 27 C -0.089 4.089 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.348 0.652 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.380 0.620 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 -24.189 9.705 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.423 6.423 14 C -0.176 4.176 15 C -0.055 4.055 16 N -0.311 5.311 17 C 0.019 3.981 18 H 0.120 0.880 19 C -0.032 4.032 20 O -0.372 6.372 21 C -0.072 4.072 22 C -0.063 4.063 23 C -0.179 4.179 24 C 0.071 3.929 25 F -0.124 7.124 26 C -0.177 4.177 27 C -0.108 4.108 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.167 0.833 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.227 0.773 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.620 -23.935 8.315 25.954 hybrid contribution 0.781 0.452 1.831 2.041 sum -4.839 -23.484 10.146 26.035 Atomic orbital electron populations 1.21674 0.80870 1.03156 1.00404 1.47843 1.06339 1.07160 1.71682 1.19659 0.92427 0.80136 0.98361 1.21332 1.36913 1.07157 0.91278 0.90765 1.24870 0.95275 0.97368 0.95579 1.69898 1.41486 1.23565 1.18646 0.86840 0.80076 0.79765 0.82924 1.19939 1.21060 1.19104 1.20303 0.88029 0.85151 0.77111 1.90663 1.14010 1.87371 1.50293 1.21582 0.99286 0.92553 1.04185 1.21727 0.94972 0.86688 1.02114 1.60495 1.19236 1.00827 1.50564 1.20559 0.95450 0.89111 0.92940 0.88015 1.22886 0.88422 0.98656 0.93272 1.86438 1.34645 1.89003 1.27074 1.19661 0.94540 0.95729 0.97318 1.20766 0.93901 0.94895 0.96742 1.21166 1.00931 0.96298 0.99488 1.17746 0.91757 0.86010 0.97347 1.91482 1.83167 1.53163 1.84559 1.21028 0.93517 0.99930 1.03213 1.20871 1.00043 0.93730 0.96144 0.93716 0.90611 0.91897 0.95288 0.94623 0.92559 0.88353 0.89800 0.94382 0.89868 0.83264 0.93026 0.92881 0.77313 0.84775 0.85054 0.85024 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.85 0.61 1.86 16 2 N -0.60 -12.15 2.86 -182.95 -0.52 -12.68 16 3 C 0.21 5.25 4.23 -5.19 -0.02 5.23 16 4 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 5 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 8 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.51 9.99 7.67 -10.99 -0.08 9.90 16 13 O -0.55 -13.01 15.56 5.55 0.09 -12.92 16 14 C -0.14 -1.85 4.51 -27.88 -0.13 -1.98 16 15 C 0.07 0.94 4.77 -3.83 -0.02 0.92 16 16 N -0.68 -6.99 5.71 -107.95 -0.62 -7.61 16 17 C 0.13 1.18 2.65 -68.86 -0.18 1.00 16 18 H 0.10 0.92 7.66 -51.93 -0.40 0.52 16 19 C 0.05 0.35 6.71 37.16 0.25 0.60 16 20 O -0.57 -3.97 11.43 -35.23 -0.40 -4.37 16 21 C -0.07 -0.68 4.83 -104.62 -0.51 -1.19 16 22 C -0.04 -0.43 8.31 -39.59 -0.33 -0.76 16 23 C -0.16 -1.53 10.03 -39.51 -0.40 -1.93 16 24 C 0.09 0.93 7.30 -39.42 -0.29 0.64 16 25 F -0.15 -1.59 17.27 2.25 0.04 -1.55 16 26 C -0.16 -1.45 10.03 -39.51 -0.40 -1.85 16 27 C -0.09 -0.79 9.67 -39.59 -0.38 -1.17 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 31 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 32 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.10 1.29 7.40 -51.93 -0.38 0.91 16 35 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.04 0.50 7.32 -51.93 -0.38 0.12 16 37 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 38 H 0.35 3.30 7.29 -39.29 -0.29 3.01 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.41 7.35 -51.93 -0.38 0.03 16 41 H 0.38 1.25 9.12 45.56 0.42 1.67 16 42 H 0.13 1.21 6.99 -52.49 -0.37 0.84 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.13 0.89 8.04 -52.49 -0.42 0.46 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -35.29 375.91 -7.76 -43.05 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.80 Total: 2.81 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.31 Total: -2.30 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.37 Total: -47.26 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.32 Total: -17.29 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.29 -7.76 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.140 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds