Wall clock time and date at job start Sat Apr 11 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99874 * 2 1 4 4 C 1.50699 * 109.47053 * 270.00061 * 3 2 1 5 5 H 1.08001 * 120.00038 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00099 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99756 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00391 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46901 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47332 * 119.99193 * 8 6 4 11 11 H 1.48494 * 109.46987 * 240.00013 * 8 6 4 12 12 C 1.34771 * 119.99736 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00175 * 179.97438 * 12 2 1 14 14 C 1.50705 * 120.00313 * 359.97438 * 12 2 1 15 15 C 1.52998 * 109.47363 * 179.97438 * 14 12 2 16 16 N 1.46903 * 109.47062 * 180.02562 * 15 14 12 17 17 C 1.46899 * 110.99701 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.47432 * 34.99939 * 17 16 15 19 19 C 1.52999 * 109.47123 * 274.99985 * 17 16 15 20 20 O 1.42903 * 109.47256 * 295.00582 * 19 17 16 21 21 C 1.50705 * 109.46995 * 155.00278 * 17 16 15 22 22 C 1.38247 * 119.97426 * 39.72176 * 21 17 16 23 23 C 1.38196 * 120.02011 * 179.72767 * 22 21 17 24 24 C 1.38454 * 119.97671 * 0.52560 * 23 22 21 25 25 F 1.35099 * 120.02498 * 179.72641 * 24 23 22 26 26 C 1.38452 * 119.95050 * 359.74710 * 24 23 22 27 27 C 1.38202 * 119.97381 * 0.02562 * 26 24 23 28 28 H 1.08998 * 109.47096 * 270.00107 * 1 2 3 29 29 H 1.08999 * 109.47273 * 29.99580 * 1 2 3 30 30 H 1.08998 * 109.47595 * 150.00136 * 1 2 3 31 31 H 1.08992 * 109.47372 * 30.00360 * 3 2 1 32 32 H 1.09005 * 109.46854 * 150.00615 * 3 2 1 33 33 H 0.96994 * 119.99558 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46825 * 59.99959 * 14 12 2 35 35 H 1.08997 * 109.47206 * 300.00614 * 14 12 2 36 36 H 1.09007 * 109.46847 * 60.00465 * 15 14 12 37 37 H 1.08997 * 109.47503 * 300.00484 * 15 14 12 38 38 H 1.00897 * 110.99603 * 56.05138 * 16 15 14 39 39 H 1.08997 * 109.47286 * 175.00142 * 19 17 16 40 40 H 1.09008 * 109.47201 * 54.99922 * 19 17 16 41 41 H 0.96700 * 114.00311 * 180.02562 * 20 19 17 42 42 H 1.08002 * 119.98395 * 359.97438 * 22 21 17 43 43 H 1.08002 * 120.00883 * 180.29767 * 23 22 21 44 44 H 1.08005 * 120.01485 * 179.97438 * 26 24 23 45 45 H 1.08000 * 119.98701 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8596 2.4171 -4.3674 10 1 2.8004 4.7381 -3.6666 11 1 4.9000 3.5247 -3.6679 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0018 16 7 1.6450 -4.9075 -0.0024 17 6 2.5694 -6.0491 -0.0031 18 1 3.4524 -5.8020 0.5865 19 6 2.9880 -6.3656 -1.4402 20 8 1.8480 -6.8017 -2.1834 21 6 1.8848 -7.2502 0.5968 22 6 0.5569 -7.5041 0.3080 23 6 -0.0703 -8.6084 0.8530 24 6 0.6287 -9.4544 1.6972 25 9 0.0149 -10.5312 2.2350 26 6 1.9569 -9.1960 1.9902 27 6 2.5834 -8.0937 1.4402 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0310 4.4435 -0.8504 34 1 0.7583 -2.5298 -0.8903 35 1 0.7590 -2.5302 0.8896 36 1 3.0068 -3.5780 0.8878 37 1 3.0056 -3.5772 -0.8922 38 1 1.0083 -4.9569 -0.7836 39 1 3.7411 -7.1535 -1.4342 40 1 3.4027 -5.4702 -1.9035 41 1 2.0398 -7.0207 -3.1055 42 1 0.0107 -6.8414 -0.3469 43 1 -1.1063 -8.8092 0.6235 44 1 2.5030 -9.8550 2.6489 45 1 3.6194 -7.8916 1.6690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273139357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:28 Heat of formation + Delta-G solvation = -105.098265 kcal Electronic energy + Delta-G solvation = -26698.206195 eV Core-core repulsion = 22630.075326 eV Total energy + Delta-G solvation = -4068.130869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.06703 -39.85587 -38.99869 -37.56532 -35.66722 -34.77421 -32.74960 -32.26268 -31.32599 -29.70855 -28.00292 -27.20902 -25.72029 -23.95619 -23.46434 -22.90477 -21.65893 -20.83084 -18.38711 -17.96983 -17.73499 -16.58564 -16.55806 -16.24678 -16.17841 -15.87851 -15.74602 -15.24386 -15.07898 -14.76824 -14.43837 -14.23709 -13.87683 -13.68128 -13.49277 -13.24718 -12.84357 -12.70504 -12.36728 -12.31839 -12.17080 -11.91708 -11.81529 -11.66238 -11.44396 -11.17158 -11.12642 -11.05769 -10.84868 -10.58404 -10.34183 -10.17722 -9.62382 -9.26753 -8.91487 -8.76208 -8.53034 -8.45599 -7.64175 -6.06007 -4.10746 0.95316 1.08678 3.27566 3.33984 3.34977 3.37920 3.45459 3.71525 3.95852 4.08091 4.28345 4.43294 4.47743 4.54406 4.68833 4.78060 5.05742 5.10137 5.11214 5.15203 5.18428 5.23738 5.28850 5.37565 5.42861 5.61457 5.70714 5.83361 5.84072 5.92706 5.93549 6.02719 6.08508 6.11681 6.22514 6.35672 6.70162 6.86958 7.05156 7.22932 7.28454 7.43750 7.53786 7.90584 8.22146 8.42185 8.88944 9.09233 9.54334 11.02090 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.002132 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.530331 B =13128.395163 C =13501.890213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.547 6.547 14 C -0.136 4.136 15 C 0.074 3.926 16 N -0.681 5.681 17 C 0.130 3.870 18 H 0.101 0.899 19 C 0.047 3.953 20 O -0.566 6.566 21 C -0.071 4.071 22 C -0.045 4.045 23 C -0.160 4.160 24 C 0.090 3.910 25 F -0.145 7.145 26 C -0.158 4.158 27 C -0.090 4.090 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.349 0.651 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.380 0.620 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.295 -24.743 1.313 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.425 6.425 14 C -0.177 4.177 15 C -0.055 4.055 16 N -0.312 5.312 17 C 0.019 3.981 18 H 0.119 0.881 19 C -0.033 4.033 20 O -0.372 6.372 21 C -0.072 4.072 22 C -0.063 4.063 23 C -0.179 4.179 24 C 0.071 3.929 25 F -0.124 7.124 26 C -0.177 4.177 27 C -0.108 4.108 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.168 0.832 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.228 0.772 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.970 -24.465 2.639 25.320 hybrid contribution 0.615 0.201 -2.323 2.412 sum -5.354 -24.264 0.316 24.849 Atomic orbital electron populations 1.21639 0.81398 1.02546 1.00469 1.48159 1.06219 1.07889 1.71246 1.19289 0.92580 0.78194 0.97473 1.21464 1.36332 1.06234 0.92315 0.92498 1.24955 0.95422 0.96430 0.97444 1.69947 1.38447 1.14332 1.30638 0.86439 0.78062 0.78316 0.84572 1.19864 1.20937 1.20883 1.20269 0.88049 0.85159 0.77421 1.90659 1.13996 1.87379 1.50454 1.21595 0.99268 0.92821 1.04016 1.21722 0.95009 0.86690 1.02075 1.60521 1.19256 1.00863 1.50568 1.20555 0.95400 0.89113 0.92997 0.88082 1.22885 0.88434 0.98730 0.93233 1.86427 1.34640 1.89012 1.27117 1.19676 0.94486 0.95782 0.97243 1.20777 0.93916 0.94874 0.96723 1.21168 1.00984 0.96181 0.99535 1.17740 0.91768 0.86011 0.97383 1.91481 1.83153 1.53175 1.84579 1.21024 0.93502 0.99920 1.03275 1.20865 1.00024 0.93779 0.96170 0.93695 0.90873 0.92371 0.95023 0.93854 0.92768 0.89721 0.88765 0.90082 0.94218 0.83192 0.93062 0.92775 0.77241 0.84747 0.85054 0.85050 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.70 2.86 -182.96 -0.52 -13.22 16 3 C 0.24 6.40 5.16 -5.20 -0.03 6.37 16 4 C -0.52 -14.86 9.39 -34.44 -0.32 -15.19 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.50 10.22 7.67 -10.99 -0.08 10.14 16 13 O -0.55 -13.42 15.56 5.56 0.09 -13.33 16 14 C -0.14 -1.91 4.51 -27.88 -0.13 -2.04 16 15 C 0.07 0.96 4.77 -3.82 -0.02 0.94 16 16 N -0.68 -7.11 5.70 -107.95 -0.61 -7.72 16 17 C 0.13 1.19 2.65 -68.86 -0.18 1.01 16 18 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 19 C 0.05 0.37 6.71 37.16 0.25 0.62 16 20 O -0.57 -4.31 11.48 -35.23 -0.40 -4.71 16 21 C -0.07 -0.67 4.83 -104.62 -0.51 -1.17 16 22 C -0.04 -0.43 8.32 -39.59 -0.33 -0.76 16 23 C -0.16 -1.52 10.03 -39.52 -0.40 -1.92 16 24 C 0.09 0.91 7.30 -39.42 -0.29 0.62 16 25 F -0.15 -1.57 17.27 2.25 0.04 -1.53 16 26 C -0.16 -1.42 10.03 -39.52 -0.40 -1.82 16 27 C -0.09 -0.78 9.67 -39.59 -0.38 -1.16 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 1.05 7.40 -51.93 -0.38 0.66 16 35 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 36 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 37 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 38 H 0.35 3.48 7.28 -39.29 -0.29 3.19 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.46 7.35 -51.92 -0.38 0.08 16 41 H 0.38 1.52 9.12 45.56 0.42 1.94 16 42 H 0.13 1.23 7.01 -52.49 -0.37 0.87 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.13 0.85 8.04 -52.49 -0.42 0.43 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -34.20 379.57 -8.11 -42.31 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.84 Total: 2.42 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.29 Total: -0.83 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.40 Total: -46.80 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.32 Total: -18.04 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.20 -8.11 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.785 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds