Wall clock time and date at job start Sat Apr 11 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99874 * 2 1 4 4 C 1.50699 * 109.47053 * 270.00061 * 3 2 1 5 5 H 1.08001 * 120.00038 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00099 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99756 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00391 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46901 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47332 * 119.99193 * 8 6 4 11 11 H 1.48494 * 109.46987 * 240.00013 * 8 6 4 12 12 C 1.34771 * 119.99736 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00175 * 179.97438 * 12 2 1 14 14 C 1.50705 * 120.00313 * 359.97438 * 12 2 1 15 15 C 1.52998 * 109.47363 * 179.97438 * 14 12 2 16 16 N 1.46903 * 109.47062 * 180.02562 * 15 14 12 17 17 C 1.46899 * 110.99701 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.47432 * 34.99939 * 17 16 15 19 19 C 1.52999 * 109.47123 * 274.99985 * 17 16 15 20 20 O 1.42903 * 109.47256 * 295.00582 * 19 17 16 21 21 C 1.50705 * 109.46995 * 155.00278 * 17 16 15 22 22 C 1.38247 * 119.97426 * 39.72176 * 21 17 16 23 23 C 1.38196 * 120.02011 * 179.72767 * 22 21 17 24 24 C 1.38454 * 119.97671 * 0.52560 * 23 22 21 25 25 F 1.35099 * 120.02498 * 179.72641 * 24 23 22 26 26 C 1.38452 * 119.95050 * 359.74710 * 24 23 22 27 27 C 1.38202 * 119.97381 * 0.02562 * 26 24 23 28 28 H 1.08998 * 109.47096 * 270.00107 * 1 2 3 29 29 H 1.08999 * 109.47273 * 29.99580 * 1 2 3 30 30 H 1.08998 * 109.47595 * 150.00136 * 1 2 3 31 31 H 1.08992 * 109.47372 * 30.00360 * 3 2 1 32 32 H 1.09005 * 109.46854 * 150.00615 * 3 2 1 33 33 H 0.96994 * 119.99558 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46825 * 59.99959 * 14 12 2 35 35 H 1.08997 * 109.47206 * 300.00614 * 14 12 2 36 36 H 1.09007 * 109.46847 * 60.00465 * 15 14 12 37 37 H 1.08997 * 109.47503 * 300.00484 * 15 14 12 38 38 H 1.00897 * 110.99603 * 56.05138 * 16 15 14 39 39 H 1.08997 * 109.47286 * 175.00142 * 19 17 16 40 40 H 1.09008 * 109.47201 * 54.99922 * 19 17 16 41 41 H 0.96700 * 114.00311 * 180.02562 * 20 19 17 42 42 H 1.08002 * 119.98395 * 359.97438 * 22 21 17 43 43 H 1.08002 * 120.00883 * 180.29767 * 23 22 21 44 44 H 1.08005 * 120.01485 * 179.97438 * 26 24 23 45 45 H 1.08000 * 119.98701 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8596 2.4171 -4.3674 10 1 2.8004 4.7381 -3.6666 11 1 4.9000 3.5247 -3.6679 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0018 16 7 1.6450 -4.9075 -0.0024 17 6 2.5694 -6.0491 -0.0031 18 1 3.4524 -5.8020 0.5865 19 6 2.9880 -6.3656 -1.4402 20 8 1.8480 -6.8017 -2.1834 21 6 1.8848 -7.2502 0.5968 22 6 0.5569 -7.5041 0.3080 23 6 -0.0703 -8.6084 0.8530 24 6 0.6287 -9.4544 1.6972 25 9 0.0149 -10.5312 2.2350 26 6 1.9569 -9.1960 1.9902 27 6 2.5834 -8.0937 1.4402 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0310 4.4435 -0.8504 34 1 0.7583 -2.5298 -0.8903 35 1 0.7590 -2.5302 0.8896 36 1 3.0068 -3.5780 0.8878 37 1 3.0056 -3.5772 -0.8922 38 1 1.0083 -4.9569 -0.7836 39 1 3.7411 -7.1535 -1.4342 40 1 3.4027 -5.4702 -1.9035 41 1 2.0398 -7.0207 -3.1055 42 1 0.0107 -6.8414 -0.3469 43 1 -1.1063 -8.8092 0.6235 44 1 2.5030 -9.8550 2.6489 45 1 3.6194 -7.8916 1.6690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273139357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:28 Heat of formation + Delta-G solvation = -129.776833 kcal Electronic energy + Delta-G solvation = -26699.276338 eV Core-core repulsion = 22630.075326 eV Total energy + Delta-G solvation = -4069.201012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.83940 -40.77344 -40.37404 -38.27553 -36.70592 -36.27908 -34.74115 -33.30470 -32.00948 -30.84183 -29.50838 -28.20773 -27.23051 -25.38785 -24.23653 -23.97672 -22.90868 -21.55908 -19.90605 -18.70289 -18.67162 -18.40467 -17.81394 -17.28856 -17.05857 -16.93819 -16.76527 -16.53891 -16.10552 -16.08015 -15.69835 -15.19573 -14.77476 -14.69797 -14.33990 -14.24709 -14.12383 -13.85359 -13.68667 -13.46279 -13.43504 -13.28804 -13.15683 -12.82541 -12.71444 -12.59681 -12.52395 -12.21032 -12.16417 -12.05576 -11.80738 -11.67171 -10.93478 -10.65605 -10.58351 -9.94651 -9.53555 -9.40100 -9.33402 -8.22798 -6.37854 0.23817 0.40797 1.36071 1.38146 1.50053 1.87271 2.29971 2.43010 2.68648 3.06325 3.12691 3.37486 3.48980 3.76419 3.83968 3.90864 4.04590 4.07042 4.16860 4.20904 4.42978 4.45647 4.47398 4.51191 4.63103 4.66505 4.71118 4.75519 4.97274 4.97999 5.01991 5.05450 5.08558 5.15017 5.24079 5.25497 5.38914 5.56613 5.62856 5.85002 5.97804 6.04800 6.05965 6.44135 6.70026 6.81658 6.86887 7.28193 7.50600 8.84401 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.002132 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.530331 B =13128.395163 C =13501.890213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.004 3.996 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.118 4.118 15 C 0.085 3.915 16 N -0.673 5.673 17 C 0.127 3.873 18 H 0.102 0.898 19 C 0.052 3.948 20 O -0.576 6.576 21 C -0.076 4.076 22 C -0.051 4.051 23 C -0.165 4.165 24 C 0.071 3.929 25 F -0.153 7.153 26 C -0.160 4.160 27 C -0.093 4.093 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.022 0.978 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.354 0.646 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.396 0.604 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.546 -26.006 0.134 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.344 5.344 3 C 0.135 3.865 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.195 4.195 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.283 3.717 13 O -0.483 6.483 14 C -0.158 4.158 15 C -0.045 4.045 16 N -0.305 5.305 17 C 0.017 3.983 18 H 0.120 0.880 19 C -0.027 4.027 20 O -0.384 6.384 21 C -0.077 4.077 22 C -0.069 4.069 23 C -0.184 4.184 24 C 0.052 3.948 25 F -0.132 7.132 26 C -0.179 4.179 27 C -0.111 4.111 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.174 0.826 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.246 0.754 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.165 0.835 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.277 -25.758 1.451 26.806 hybrid contribution 0.996 0.558 -1.911 2.226 sum -6.281 -25.200 -0.459 25.975 Atomic orbital electron populations 1.21937 0.77818 1.04045 1.02571 1.48209 1.08471 1.06454 1.71225 1.18753 0.91086 0.80578 0.96035 1.21725 1.36619 1.06500 0.93008 0.92815 1.25906 0.94987 0.96489 1.02081 1.70066 1.39007 1.14830 1.33020 0.85337 0.77858 0.78405 0.79012 1.19003 1.19458 1.20762 1.21386 0.87810 0.86720 0.75750 1.90628 1.16694 1.88279 1.52672 1.21521 0.98975 0.88991 1.06312 1.21497 0.94606 0.87688 1.00700 1.60462 1.19199 1.00013 1.50836 1.20609 0.95183 0.88546 0.93994 0.88013 1.22756 0.88733 0.98832 0.92385 1.86386 1.34598 1.88983 1.28430 1.19759 0.94596 0.95886 0.97424 1.20852 0.94096 0.95014 0.96954 1.21331 1.01633 0.96066 0.99325 1.17991 0.92457 0.86230 0.98142 1.91458 1.83363 1.53591 1.84790 1.21256 0.93226 1.00187 1.03236 1.21111 1.00979 0.93369 0.95630 0.91242 0.91756 0.88500 0.96021 0.98497 0.92416 0.87026 0.86345 0.91641 0.95719 0.82581 0.91857 0.93568 0.75427 0.84403 0.83956 0.83511 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 10.24 127.77 1.31 3.58 16 2 N -0.61 -25.71 2.86 -851.14 -2.43 -28.15 16 3 C 0.26 13.96 5.16 85.63 0.44 14.40 16 4 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.00 0.24 5.46 84.65 0.46 0.70 16 7 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 8 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 C 0.49 19.94 7.67 87.66 0.67 20.61 16 13 O -0.60 -30.51 15.56 -3.02 -0.05 -30.55 16 14 C -0.12 -3.04 4.51 29.85 0.13 -2.90 16 15 C 0.08 2.10 4.77 86.30 0.41 2.51 16 16 N -0.67 -12.69 5.70 -495.44 -2.82 -15.51 16 17 C 0.13 2.12 2.65 44.17 0.12 2.24 16 18 H 0.10 1.69 7.66 -2.39 -0.02 1.67 16 19 C 0.05 0.75 6.71 71.98 0.48 1.23 16 20 O -0.58 -7.56 11.48 -148.98 -1.71 -9.27 16 21 C -0.08 -1.29 4.83 -19.86 -0.10 -1.39 16 22 C -0.05 -0.88 8.32 22.26 0.19 -0.70 16 23 C -0.16 -2.91 10.03 22.31 0.22 -2.69 16 24 C 0.07 1.35 7.30 22.37 0.16 1.52 16 25 F -0.15 -3.20 17.27 44.97 0.78 -2.42 16 26 C -0.16 -2.63 10.03 22.31 0.22 -2.40 16 27 C -0.09 -1.43 9.67 22.26 0.22 -1.21 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 30 H 0.10 2.05 6.44 -2.39 -0.02 2.04 16 31 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 32 H 0.00 -0.20 7.42 -2.38 -0.02 -0.21 16 33 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.11 2.33 7.40 -2.39 -0.02 2.31 16 35 H 0.12 2.56 8.11 -2.39 -0.02 2.54 16 36 H 0.07 1.84 8.01 -2.38 -0.02 1.82 16 37 H 0.02 0.68 7.32 -2.39 -0.02 0.67 16 38 H 0.35 6.13 7.28 -89.70 -0.65 5.47 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.74 7.35 -2.38 -0.02 0.72 16 41 H 0.40 2.34 9.12 -74.06 -0.68 1.67 16 42 H 0.14 2.25 7.01 -2.91 -0.02 2.23 16 43 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.15 1.63 8.04 -2.91 -0.02 1.61 16 Total: -1.00 -76.65 379.57 0.95 -75.69 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.31 Total: 14.99 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 5.19 Total: 4.60 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -4.97 Total: -99.79 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.76 Total: -39.82 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.65 0.95 -75.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.083 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds