Wall clock time and date at job start Sat Apr 11 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00106 * 2 1 4 4 H 1.09002 * 109.47118 * 331.02632 * 3 2 1 5 5 C 1.50698 * 109.47265 * 91.02418 * 3 2 1 6 6 C 1.38220 * 120.00924 * 24.99654 * 5 3 2 7 7 C 1.38226 * 120.02701 * 179.97438 * 6 5 3 8 8 C 1.38267 * 120.04764 * 0.02562 * 7 6 5 9 9 C 1.38181 * 120.02820 * 359.97438 * 8 7 6 10 10 C 1.38432 * 120.01777 * 204.72646 * 5 3 2 11 11 F 1.35104 * 120.02109 * 359.97438 * 10 5 3 12 12 C 1.52996 * 109.47234 * 211.02456 * 3 2 1 13 13 H 1.09005 * 109.47309 * 185.12750 * 12 3 2 14 14 C 1.52998 * 109.47464 * 305.12399 * 12 3 2 15 15 N 1.46503 * 109.47307 * 65.12640 * 12 3 2 16 16 C 1.34775 * 120.00303 * 153.42101 * 15 12 3 17 17 O 1.21589 * 119.99842 * 359.97438 * 16 15 12 18 18 N 1.34772 * 120.00292 * 180.02562 * 16 15 12 19 19 C 1.46500 * 120.00073 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47010 * 179.97438 * 19 18 16 21 21 C 1.50700 * 109.47092 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99801 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99791 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00488 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99664 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46924 * 90.00510 * 25 23 21 27 27 H 1.48499 * 109.47101 * 210.00037 * 25 23 21 28 28 H 1.48491 * 109.47335 * 330.00376 * 25 23 21 29 29 H 1.08996 * 109.47558 * 175.40604 * 1 2 3 30 30 H 1.09004 * 109.47224 * 295.40766 * 1 2 3 31 31 H 1.09008 * 109.47531 * 55.40787 * 1 2 3 32 32 H 1.08000 * 119.99086 * 0.02562 * 6 5 3 33 33 H 1.07997 * 119.97544 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.98510 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.01349 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.47213 * 300.00521 * 14 12 3 37 37 H 1.08997 * 109.47830 * 180.02562 * 14 12 3 38 38 H 1.09005 * 109.46570 * 59.99899 * 14 12 3 39 39 H 0.96995 * 119.99725 * 333.41464 * 15 12 3 40 40 H 0.96999 * 120.00259 * 359.97438 * 18 16 15 41 41 H 1.08998 * 109.46695 * 299.99228 * 19 18 16 42 42 H 1.08998 * 109.47402 * 59.99376 * 19 18 16 43 43 H 1.09001 * 109.46931 * 299.99785 * 20 19 18 44 44 H 1.08998 * 109.47440 * 59.99530 * 20 19 18 45 45 H 0.96995 * 120.00694 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3366 2.0031 -0.4978 5 6 2.2377 1.7541 1.4206 6 6 2.3940 0.8172 2.4247 7 6 2.6032 1.2283 3.7278 8 6 2.6559 2.5768 4.0283 9 6 2.5000 3.5153 3.0261 10 6 2.2959 3.1045 1.7195 11 9 2.1493 4.0210 0.7377 12 6 3.3469 1.2686 -0.7434 13 1 3.8330 2.2411 -0.6655 14 6 4.2463 0.1977 -0.1229 15 7 3.1123 0.9516 -2.1544 16 6 3.9854 1.3682 -3.0929 17 8 4.9675 2.0074 -2.7685 18 7 3.7694 1.0770 -4.3909 19 6 4.7188 1.5293 -5.4109 20 6 4.2429 1.0693 -6.7903 21 6 5.2192 1.5351 -7.8396 22 1 6.0915 2.1028 -7.5514 23 6 4.9986 1.2364 -9.1674 24 7 3.9361 0.5455 -9.5184 25 14 6.2084 1.8144 -10.4682 26 1 7.2545 0.7792 -10.6661 27 1 5.4890 2.0419 -11.7472 28 1 6.8435 3.0815 -10.0253 29 1 -0.3634 -1.0243 -0.0823 30 1 -0.3634 0.4409 0.9283 31 1 -0.3634 0.5835 -0.8460 32 1 2.3534 -0.2364 2.1911 33 1 2.7256 0.4955 4.5117 34 1 2.8191 2.8969 5.0468 35 1 2.5408 4.5686 3.2611 36 1 4.4208 0.4335 0.9270 37 1 5.1988 0.1717 -0.6522 38 1 3.7602 -0.7748 -0.2009 39 1 2.3287 0.4419 -2.4132 40 1 2.9858 0.5674 -4.6498 41 1 4.7813 2.6174 -5.3920 42 1 5.7018 1.1053 -5.2059 43 1 4.1807 -0.0188 -6.8089 44 1 3.2599 1.4930 -6.9955 45 1 3.7807 0.3356 -10.4526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273635768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:47 Heat of formation + Delta-G solvation = -105.360442 kcal Electronic energy + Delta-G solvation = -27261.686308 eV Core-core repulsion = 23193.544071 eV Total energy + Delta-G solvation = -4068.142238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.19591 -40.32221 -39.33067 -38.03461 -35.48503 -34.49387 -32.90209 -32.37930 -30.91334 -30.33023 -28.90742 -27.47132 -26.13348 -24.70156 -23.01848 -22.84979 -21.20605 -20.69615 -20.38121 -18.25311 -17.89972 -17.26294 -16.85719 -16.30318 -16.25050 -15.91109 -15.68167 -15.20893 -15.03213 -14.89448 -14.49706 -14.45975 -14.00842 -13.66328 -13.52682 -13.48232 -13.12802 -13.08555 -12.73319 -12.32026 -12.25023 -12.15441 -11.95422 -11.52876 -11.23998 -11.20716 -11.14812 -10.99829 -10.60337 -10.27582 -10.15005 -9.87607 -9.51723 -9.37586 -9.22526 -9.08785 -8.89965 -8.45085 -8.19691 -6.06170 -4.08541 0.72780 0.83748 3.00324 3.23607 3.27272 3.31977 3.37947 3.42871 3.67211 3.93182 4.20374 4.42533 4.43979 4.51341 4.64070 4.71124 4.81279 4.88337 5.01916 5.05047 5.07330 5.30898 5.31564 5.37824 5.43492 5.45696 5.67007 5.72068 5.74016 5.91690 5.97408 6.03227 6.29595 6.35680 6.45025 6.49452 6.68223 6.75039 6.82850 7.06383 7.31369 7.61381 7.67599 7.93383 8.30018 8.50344 8.96658 9.06583 9.55975 11.05527 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025119 B = 0.002217 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.429664 B =12628.344623 C =13022.263430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.124 3.876 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.065 4.065 7 C -0.135 4.135 8 C -0.089 4.089 9 C -0.156 4.156 10 C 0.108 3.892 11 F -0.134 7.134 12 C 0.175 3.825 13 H 0.098 0.902 14 C -0.159 4.159 15 N -0.746 5.746 16 C 0.700 3.300 17 O -0.598 6.598 18 N -0.738 5.738 19 C 0.140 3.860 20 C 0.013 3.987 21 C -0.519 4.519 22 H 0.060 0.940 23 C 0.058 3.942 24 N -0.895 5.895 25 Si 0.897 3.103 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.272 1.272 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.393 0.607 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 -0.636 29.103 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.287 6.287 3 C 0.066 3.934 4 H 0.098 0.902 5 C -0.145 4.145 6 C -0.083 4.083 7 C -0.153 4.153 8 C -0.107 4.107 9 C -0.175 4.175 10 C 0.089 3.911 11 F -0.113 7.113 12 C 0.069 3.931 13 H 0.116 0.884 14 C -0.218 4.218 15 N -0.402 5.402 16 C 0.400 3.600 17 O -0.476 6.476 18 N -0.392 5.392 19 C 0.018 3.982 20 C -0.025 4.025 21 C -0.558 4.558 22 H 0.078 0.922 23 C -0.144 4.144 24 N -0.534 5.534 25 Si 0.725 3.275 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.197 1.197 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.226 0.774 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.578 -0.227 29.157 30.393 hybrid contribution -0.441 0.211 -1.148 1.248 sum -9.019 -0.016 28.009 29.425 Atomic orbital electron populations 1.22886 0.80730 1.03090 1.00320 1.87941 1.19864 1.26197 1.94667 1.21162 0.95783 0.85639 0.90865 0.90153 1.20267 1.05071 0.91834 0.97323 1.20956 0.95752 1.00113 0.91433 1.21257 1.01225 0.96047 0.96755 1.21066 0.97780 0.92763 0.99086 1.21152 1.03869 1.01300 0.91200 1.17578 1.02110 0.85719 0.85697 1.91538 1.92919 1.65667 1.61150 1.20718 0.92508 1.00542 0.79357 0.88403 1.22124 1.00052 0.99234 1.00361 1.45084 1.28254 1.61226 1.05654 1.16048 0.82923 0.79949 0.81120 1.90884 1.29995 1.45660 1.81107 1.45522 1.29191 1.59533 1.04931 1.21580 0.90867 0.98572 0.87208 1.19325 0.97327 0.97091 0.88723 1.21060 1.08479 1.34954 0.91329 0.92220 1.24999 0.95552 0.95075 0.98729 1.69953 1.26930 1.39151 1.17359 0.86510 0.80987 0.79239 0.80807 1.20575 1.21211 1.19723 0.89175 0.94016 0.93587 0.84155 0.85216 0.85028 0.84607 0.92024 0.91836 0.91541 0.77047 0.77426 0.92817 0.92814 0.95975 0.95996 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.87 101.05 1.10 1.27 16 2 O -0.37 -3.30 8.03 -35.23 -0.28 -3.58 16 3 C 0.12 1.25 1.94 -27.89 -0.05 1.19 16 4 H 0.08 0.83 7.37 -51.93 -0.38 0.44 16 5 C -0.14 -1.35 4.47 -104.56 -0.47 -1.82 16 6 C -0.06 -0.50 8.02 -39.59 -0.32 -0.82 16 7 C -0.13 -0.86 10.04 -39.58 -0.40 -1.26 16 8 C -0.09 -0.57 10.04 -39.59 -0.40 -0.96 16 9 C -0.16 -1.24 10.03 -39.51 -0.40 -1.64 16 10 C 0.11 1.09 7.24 -39.42 -0.29 0.80 16 11 F -0.13 -1.59 16.57 2.25 0.04 -1.55 16 12 C 0.17 2.21 2.46 -67.93 -0.17 2.04 16 13 H 0.10 1.47 7.53 -51.93 -0.39 1.08 16 14 C -0.16 -1.90 8.95 37.16 0.33 -1.57 16 15 N -0.75 -10.28 5.05 -58.68 -0.30 -10.58 16 16 C 0.70 12.82 8.55 -86.92 -0.74 12.07 16 17 O -0.60 -13.28 15.98 5.29 0.08 -13.20 16 18 N -0.74 -13.59 5.56 -65.23 -0.36 -13.95 16 19 C 0.14 3.11 5.61 -4.04 -0.02 3.09 16 20 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 21 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 22 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 25 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.29 7.98 -51.92 -0.41 -0.12 16 32 H 0.14 1.01 7.35 -52.49 -0.39 0.63 16 33 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.06 0.65 6.52 -51.93 -0.34 0.31 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 39 H 0.40 4.52 8.41 -40.82 -0.34 4.18 16 40 H 0.39 6.24 8.49 -40.82 -0.35 5.89 16 41 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -33.35 381.64 -8.49 -41.84 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.76 Total: 5.14 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.37 Total: -0.83 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.08 Total: -50.21 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.20 Total: -16.78 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.35 -8.49 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273635768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.524 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds