Wall clock time and date at job start Sat Apr 11 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47087 * 2 1 4 4 C 1.50700 * 109.47259 * 119.99760 * 2 1 3 5 5 H 1.07991 * 120.00166 * 120.00285 * 4 2 1 6 6 C 1.37883 * 119.99732 * 300.00107 * 4 2 1 7 7 N 1.31512 * 120.00306 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99806 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47325 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46840 * 299.99926 * 8 6 4 11 11 H 1.48503 * 109.47430 * 59.99709 * 8 6 4 12 12 N 1.46502 * 109.47468 * 240.00014 * 2 1 3 13 13 C 1.34771 * 120.00223 * 84.99464 * 12 2 1 14 14 O 1.21597 * 119.99835 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99887 * 180.02562 * 13 12 2 16 16 C 1.40281 * 119.99814 * 174.69007 * 15 13 12 17 17 C 1.38681 * 120.06397 * 335.11028 * 16 15 13 18 18 C 1.38218 * 120.00956 * 179.72431 * 17 16 15 19 19 C 1.38468 * 120.13271 * 0.54792 * 18 17 16 20 20 F 1.35097 * 119.93696 * 179.74739 * 19 18 17 21 21 C 1.38432 * 120.12733 * 359.72959 * 19 18 17 22 22 C 1.38545 * 119.98893 * 359.97438 * 21 19 18 23 23 O 1.35985 * 120.06519 * 179.97438 * 22 21 19 24 24 C 1.42899 * 117.00094 * 5.22652 * 23 22 21 25 25 C 1.52997 * 109.46968 * 55.25821 * 24 23 22 26 26 C 1.52995 * 109.46888 * 175.25406 * 24 23 22 27 27 C 1.53002 * 109.47320 * 295.25490 * 24 23 22 28 28 H 1.08999 * 109.47234 * 300.00179 * 1 2 3 29 29 H 1.09001 * 109.47287 * 60.00494 * 1 2 3 30 30 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00196 * 180.02562 * 7 6 4 32 32 H 0.96998 * 119.99545 * 265.00558 * 12 2 1 33 33 H 0.96997 * 120.00269 * 354.68377 * 15 13 12 34 34 H 1.07999 * 119.99434 * 359.97438 * 17 16 15 35 35 H 1.07995 * 119.93108 * 180.27406 * 18 17 16 36 36 H 1.08003 * 120.00549 * 180.02562 * 21 19 18 37 37 H 1.09000 * 109.47674 * 65.42128 * 25 24 23 38 38 H 1.09006 * 109.47083 * 185.42190 * 25 24 23 39 39 H 1.09004 * 109.47048 * 305.41313 * 25 24 23 40 40 H 1.09006 * 109.47193 * 60.00337 * 26 24 23 41 41 H 1.09007 * 109.47340 * 179.97438 * 26 24 23 42 42 H 1.09001 * 109.47599 * 300.00313 * 26 24 23 43 43 H 1.08999 * 109.46825 * 64.72827 * 27 24 23 44 44 H 1.09000 * 109.47098 * 184.72867 * 27 24 23 45 45 H 1.09000 * 109.46859 * 304.73154 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5883 1.1314 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 1.8279 -0.4190 5.2205 10 1 1.8280 -2.5195 4.0082 11 1 3.8075 -1.1187 4.0078 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8581 1.1616 -2.4117 15 7 2.5959 -0.6539 -3.4576 16 6 2.6246 0.0144 -4.6907 17 6 1.7644 1.0765 -4.9256 18 6 1.7976 1.7377 -6.1389 19 6 2.6809 1.3348 -7.1262 20 9 2.7064 1.9807 -8.3125 21 6 3.5380 0.2716 -6.8999 22 6 3.5134 -0.3910 -5.6834 23 8 4.3543 -1.4360 -5.4596 24 6 5.3154 -1.7247 -6.4769 25 6 6.1415 -0.4704 -6.7687 26 6 6.2412 -2.8456 -6.0005 27 6 4.5925 -2.1670 -7.7508 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.7094 1.1620 3.4844 32 1 2.2490 -1.6318 -1.1525 33 1 2.8991 -1.5732 -3.3970 34 1 1.0712 1.3896 -4.1588 35 1 1.1302 2.5675 -6.3188 36 1 4.2265 -0.0408 -7.6712 37 1 6.7312 -0.2109 -5.8895 38 1 6.8082 -0.6619 -7.6097 39 1 5.4739 0.3552 -7.0152 40 1 5.6527 -3.7393 -5.7926 41 1 6.9741 -3.0662 -6.7767 42 1 6.7563 -2.5306 -5.0930 43 1 3.9975 -1.3394 -8.1369 44 1 5.3259 -2.4674 -8.4991 45 1 3.9391 -3.0094 -7.5238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274865380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:56 Heat of formation + Delta-G solvation = -83.842864 kcal Electronic energy + Delta-G solvation = -27959.145623 eV Core-core repulsion = 23891.936457 eV Total energy + Delta-G solvation = -4067.209166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.89738 -42.17030 -41.02114 -38.75829 -36.84180 -35.79174 -34.83912 -34.29312 -31.86703 -31.08031 -29.27000 -28.36021 -28.21917 -27.31873 -24.72221 -24.01868 -22.68980 -21.59404 -21.50481 -19.92249 -19.15660 -18.65427 -17.93119 -17.65153 -17.04048 -16.84915 -16.65745 -16.33975 -16.17148 -15.91914 -15.74699 -15.53020 -15.10466 -14.69572 -14.37601 -14.30961 -14.01100 -13.89923 -13.73296 -13.21805 -13.19261 -12.98054 -12.88991 -12.85161 -12.78730 -12.72361 -12.63362 -12.25508 -12.23083 -12.13746 -11.63967 -11.44239 -11.32989 -11.10369 -10.93345 -10.57894 -9.86027 -9.60880 -8.71633 -8.16541 -6.33754 0.05077 0.20708 1.46015 1.48414 1.55791 1.69363 2.04020 2.10656 2.43011 2.64418 3.14028 3.21661 3.38467 3.64341 3.73804 3.81666 3.95653 3.96699 4.03025 4.31622 4.54835 4.62043 4.63397 4.75083 4.76575 4.83359 4.88126 4.89985 4.95245 4.95344 5.04565 5.10742 5.18196 5.22167 5.29731 5.34570 5.39695 5.45125 5.60150 5.66131 5.76436 5.84807 6.10393 6.23561 6.36273 6.73418 7.19590 7.34534 7.64587 8.89766 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.003043 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.701528 B = 9197.961612 C =10527.072255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.286 1.286 10 H -0.264 1.264 11 H -0.271 1.271 12 N -0.713 5.713 13 C 0.694 3.306 14 O -0.620 6.620 15 N -0.666 5.666 16 C 0.122 3.878 17 C -0.089 4.089 18 C -0.167 4.167 19 C 0.102 3.898 20 F -0.139 7.139 21 C -0.232 4.232 22 C 0.133 3.867 23 O -0.312 6.312 24 C 0.099 3.901 25 C -0.206 4.206 26 C -0.137 4.137 27 C -0.194 4.194 28 H 0.068 0.932 29 H 0.014 0.986 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.403 0.597 33 H 0.420 0.580 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.194 0.806 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.218 -8.242 -22.484 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.212 1.212 10 H -0.188 1.188 11 H -0.197 1.197 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.501 6.501 15 N -0.314 5.314 16 C 0.026 3.974 17 C -0.110 4.110 18 C -0.186 4.186 19 C 0.081 3.919 20 F -0.117 7.117 21 C -0.250 4.250 22 C 0.085 3.915 23 O -0.227 6.227 24 C 0.062 3.938 25 C -0.263 4.263 26 C -0.194 4.194 27 C -0.251 4.251 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.258 0.742 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.210 0.790 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.877 -7.230 -22.149 24.933 hybrid contribution 0.229 -0.524 0.852 1.026 sum 9.105 -7.754 -21.297 24.425 Atomic orbital electron populations 1.21919 0.98214 0.99472 0.99696 1.18272 0.91002 0.91717 0.80477 0.98063 1.21506 1.32759 1.13694 0.90714 0.90848 1.25778 0.94853 0.95580 1.02237 1.70041 1.36885 1.23818 1.24722 0.85388 0.78599 0.78719 0.77565 1.21189 1.18830 1.19659 1.45471 1.68628 1.13907 1.08475 1.16196 0.78642 0.84819 0.80905 1.90812 1.58638 1.15922 1.84759 1.42332 1.67334 1.16904 1.04876 1.17157 0.97784 0.97635 0.84836 1.21122 0.97946 0.94799 0.97114 1.21081 1.01791 1.03180 0.92562 1.17386 0.98636 0.93964 0.81898 1.91481 1.95800 1.80432 1.44004 1.21937 1.04738 0.99293 0.99062 1.18072 0.90587 0.90313 0.92549 1.86135 1.44769 1.45072 1.46736 1.22169 0.87584 0.96625 0.87400 1.22959 1.01441 0.97969 1.03936 1.21837 0.98398 0.96269 1.02855 1.22838 1.02280 1.02975 0.97013 0.91344 0.96731 0.94155 0.92494 0.76221 0.74213 0.84242 0.83190 0.79008 0.92250 0.88246 0.90513 0.91329 0.87989 0.92233 0.90749 0.88415 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.29 14.99 2.56 44.24 0.11 15.10 16 3 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 4 C -0.55 -28.91 8.73 25.60 0.22 -28.68 16 5 H 0.07 3.60 7.74 -2.92 -0.02 3.57 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.38 11.32 21.45 0.24 -52.13 16 8 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 9 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 N -0.71 -29.90 5.07 -461.42 -2.34 -32.25 16 13 C 0.69 28.79 8.34 179.06 1.49 30.28 16 14 O -0.62 -30.59 13.17 -4.02 -0.05 -30.65 16 15 N -0.67 -21.50 5.30 -316.74 -1.68 -23.18 16 16 C 0.12 3.81 6.45 38.14 0.25 4.05 16 17 C -0.09 -2.89 8.72 22.37 0.20 -2.70 16 18 C -0.17 -4.50 10.02 22.32 0.22 -4.27 16 19 C 0.10 2.46 7.30 22.37 0.16 2.63 16 20 F -0.14 -3.21 17.26 44.97 0.78 -2.43 16 21 C -0.23 -5.04 6.14 22.39 0.14 -4.90 16 22 C 0.13 3.36 6.16 22.59 0.14 3.50 16 23 O -0.31 -6.90 9.20 -93.38 -0.86 -7.76 16 24 C 0.10 1.48 1.11 -10.80 -0.01 1.47 16 25 C -0.21 -2.90 8.06 71.98 0.58 -2.32 16 26 C -0.14 -1.59 8.84 71.98 0.64 -0.96 16 27 C -0.19 -2.25 8.26 71.98 0.59 -1.65 16 28 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 29 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.40 14.14 8.56 -92.71 -0.79 13.35 16 33 H 0.42 11.06 8.36 -92.71 -0.77 10.28 16 34 H 0.14 5.35 5.78 -2.91 -0.02 5.33 16 35 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.19 3.14 3.07 -2.91 -0.01 3.13 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 1.24 4.24 -2.38 -0.01 1.23 16 40 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.94 4.57 -2.39 -0.01 0.93 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.76 363.03 3.44 -63.32 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -0.52 Total: 34.59 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.85 Total: 6.72 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -3.78 Total: -107.56 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.91 Total: -38.40 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -66.76 3.44 -63.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274865380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.525 kcal (2) G-P(sol) polarization free energy of solvation -66.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds