Wall clock time and date at job start Sat Apr 11 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47105 * 2 1 4 4 C 1.50703 * 109.47243 * 239.99533 * 2 1 3 5 5 H 1.07996 * 120.00107 * 239.99996 * 4 2 1 6 6 C 1.37880 * 119.99604 * 60.00146 * 4 2 1 7 7 N 1.31516 * 120.00149 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47173 * 90.00270 * 8 6 4 10 10 H 1.48502 * 109.47076 * 210.00142 * 8 6 4 11 11 H 1.48498 * 109.47309 * 330.00276 * 8 6 4 12 12 N 1.46506 * 109.46873 * 119.99950 * 2 1 3 13 13 C 1.34778 * 119.99877 * 274.72447 * 12 2 1 14 14 O 1.21593 * 119.99715 * 0.27461 * 13 12 2 15 15 N 1.34769 * 120.00022 * 180.27829 * 13 12 2 16 16 C 1.40281 * 120.00184 * 174.68521 * 15 13 12 17 17 C 1.38680 * 120.06385 * 335.11309 * 16 15 13 18 18 C 1.38211 * 120.01036 * 179.72153 * 17 16 15 19 19 C 1.38465 * 120.13273 * 0.55140 * 18 17 16 20 20 F 1.35101 * 119.93522 * 179.74528 * 19 18 17 21 21 C 1.38434 * 120.12935 * 359.72380 * 19 18 17 22 22 C 1.38536 * 119.98718 * 0.02562 * 21 19 18 23 23 O 1.35980 * 120.06758 * 179.97438 * 22 21 19 24 24 C 1.42900 * 116.99969 * 5.22654 * 23 22 21 25 25 C 1.53007 * 109.46915 * 55.25713 * 24 23 22 26 26 C 1.53004 * 109.47081 * 175.25426 * 24 23 22 27 27 C 1.52991 * 109.47261 * 295.25719 * 24 23 22 28 28 H 1.09007 * 109.47287 * 60.00005 * 1 2 3 29 29 H 1.09005 * 109.47592 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47266 * 300.00452 * 1 2 3 31 31 H 0.96998 * 120.00159 * 180.02562 * 7 6 4 32 32 H 0.96993 * 120.00012 * 94.99823 * 12 2 1 33 33 H 0.97003 * 119.99902 * 354.68349 * 15 13 12 34 34 H 1.08004 * 119.99486 * 359.96819 * 17 16 15 35 35 H 1.08003 * 119.93163 * 180.27530 * 18 17 16 36 36 H 1.07995 * 120.00674 * 180.02562 * 21 19 18 37 37 H 1.08998 * 109.47209 * 65.41738 * 25 24 23 38 38 H 1.08999 * 109.46961 * 185.42365 * 25 24 23 39 39 H 1.09001 * 109.47070 * 305.42072 * 25 24 23 40 40 H 1.08994 * 109.47152 * 60.00261 * 26 24 23 41 41 H 1.08999 * 109.47087 * 180.02562 * 26 24 23 42 42 H 1.08996 * 109.46929 * 300.00172 * 26 24 23 43 43 H 1.09005 * 109.47583 * 64.72913 * 27 24 23 44 44 H 1.09006 * 109.47376 * 184.73108 * 27 24 23 45 45 H 1.09004 * 109.47377 * 304.72309 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0182 -0.6906 1.1962 13 6 2.1522 -0.0169 2.3558 14 8 1.8630 1.1629 2.4103 15 7 2.6067 -0.6508 3.4549 16 6 2.8521 0.0731 4.6311 17 6 3.1351 1.4292 4.5660 18 6 3.3711 2.1426 5.7260 19 6 3.3368 1.5038 6.9540 20 9 3.5731 2.2039 8.0850 21 6 3.0605 0.1491 7.0252 22 6 2.8181 -0.5699 5.8661 23 8 2.5470 -1.9007 5.9340 24 6 2.4145 -2.4700 7.2380 25 6 1.3507 -1.7012 8.0244 26 6 1.9965 -3.9366 7.1141 27 6 3.7541 -2.3817 7.9716 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.7089 1.1613 -3.4844 32 1 2.2489 -1.6317 1.1527 33 1 2.7641 -1.6077 3.4325 34 1 3.1672 1.9287 3.6090 35 1 3.5870 3.1995 5.6741 36 1 3.0339 -0.3470 7.9840 37 1 0.3777 -1.8437 7.5543 38 1 1.3172 -2.0723 9.0487 39 1 1.5994 -0.6400 8.0303 40 1 2.7543 -4.4843 6.5539 41 1 1.8950 -4.3707 8.1087 42 1 1.0421 -3.9995 6.5914 43 1 4.0111 -1.3349 8.1342 44 1 3.6764 -2.8902 8.9326 45 1 4.5295 -2.8571 7.3708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274865382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:58 Heat of formation + Delta-G solvation = -65.449956 kcal Electronic energy + Delta-G solvation = -27954.378916 eV Core-core repulsion = 23887.967327 eV Total energy + Delta-G solvation = -4066.411589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.85400 -41.11967 -39.63996 -37.60100 -35.10210 -34.55220 -33.77714 -32.41323 -30.81449 -29.42267 -27.85321 -27.76761 -27.56750 -25.25975 -23.59400 -22.72735 -21.15163 -20.67520 -19.86941 -18.41298 -17.89551 -17.63331 -16.64174 -16.15413 -15.88729 -15.58517 -15.39474 -15.14337 -15.02617 -14.73626 -14.39579 -14.14868 -13.83054 -13.48767 -13.26475 -13.10209 -12.80671 -12.62996 -12.43792 -12.39352 -12.17646 -12.01453 -11.88825 -11.68439 -11.42972 -11.10885 -11.00389 -10.87643 -10.73960 -10.57657 -10.34188 -10.24297 -10.03133 -9.37770 -9.05482 -8.60366 -8.55819 -8.04223 -7.50088 -6.13833 -4.23025 1.17977 1.27753 2.88495 3.15026 3.23772 3.31093 3.33857 3.47640 3.96528 4.24726 4.31594 4.39795 4.44037 4.57319 4.65118 4.84339 4.97692 5.06009 5.15981 5.18915 5.19148 5.32319 5.37587 5.42367 5.45528 5.60088 5.70546 5.83081 5.85807 5.90423 6.04090 6.15300 6.38500 6.61309 6.78484 6.89828 6.97554 7.11126 7.21300 7.34310 7.44562 7.61229 7.82186 7.98221 8.13928 8.71069 8.82663 9.20434 9.45192 10.92217 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.002955 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.633069 B = 9474.278328 C =10493.951243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.717 5.717 13 C 0.693 3.307 14 O -0.583 6.583 15 N -0.684 5.684 16 C 0.152 3.848 17 C -0.073 4.073 18 C -0.163 4.163 19 C 0.097 3.903 20 F -0.144 7.144 21 C -0.243 4.243 22 C 0.121 3.879 23 O -0.303 6.303 24 C 0.110 3.890 25 C -0.207 4.207 26 C -0.138 4.138 27 C -0.198 4.198 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.407 0.593 34 H 0.168 0.832 35 H 0.137 0.863 36 H 0.167 0.833 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.252 -6.971 21.627 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.367 5.367 13 C 0.394 3.606 14 O -0.462 6.462 15 N -0.331 5.331 16 C 0.054 3.946 17 C -0.094 4.094 18 C -0.183 4.183 19 C 0.076 3.924 20 F -0.122 7.122 21 C -0.263 4.263 22 C 0.073 3.927 23 O -0.217 6.217 24 C 0.073 3.927 25 C -0.264 4.264 26 C -0.195 4.195 27 C -0.255 4.255 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.242 0.758 34 H 0.185 0.815 35 H 0.155 0.845 36 H 0.183 0.817 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.847 -5.917 21.246 22.387 hybrid contribution 0.439 -1.251 -0.421 1.392 sum 4.286 -7.168 20.824 22.437 Atomic orbital electron populations 1.22110 0.98517 0.99120 1.00966 1.18701 0.90879 0.93772 0.78793 0.93159 1.21207 1.32544 1.13293 0.90231 0.92048 1.24877 0.94820 0.94945 0.99030 1.69902 1.35829 1.22349 1.23937 0.86431 0.79155 0.79251 0.82153 1.20558 1.21056 1.19855 1.45879 1.68355 1.13401 1.09108 1.16139 0.78538 0.85523 0.80403 1.90825 1.56942 1.14374 1.84016 1.42692 1.69221 1.11615 1.09551 1.16973 1.02711 0.91738 0.83179 1.21349 0.95859 0.91873 1.00319 1.21002 1.05571 1.01206 0.90497 1.17354 1.03359 0.89490 0.82177 1.91465 1.92218 1.78881 1.49682 1.21636 1.10989 0.93999 0.99627 1.18160 0.99286 0.83634 0.91658 1.86121 1.85810 1.19085 1.30699 1.21781 0.95234 0.94341 0.81353 1.22959 0.99615 1.03013 1.00780 1.21788 1.02700 0.92140 1.02888 1.22866 0.97127 1.04234 1.01233 0.89077 0.95519 0.96554 0.92529 0.78078 0.75762 0.81485 0.84542 0.81653 0.91232 0.90948 0.89417 0.91375 0.90508 0.91336 0.90142 0.90965 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.28 7.04 2.56 -69.08 -0.18 6.87 16 3 H 0.05 1.45 7.57 -51.93 -0.39 1.06 16 4 C -0.53 -13.96 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 12 N -0.72 -14.77 5.07 -59.81 -0.30 -15.07 16 13 C 0.69 13.94 8.34 -86.92 -0.73 13.22 16 14 O -0.58 -13.64 13.17 5.28 0.07 -13.57 16 15 N -0.68 -10.91 5.30 -14.09 -0.07 -10.99 16 16 C 0.15 2.34 6.45 -83.44 -0.54 1.81 16 17 C -0.07 -1.16 8.72 -39.43 -0.34 -1.50 16 18 C -0.16 -2.22 10.02 -39.51 -0.40 -2.61 16 19 C 0.10 1.24 7.30 -39.43 -0.29 0.96 16 20 F -0.14 -1.82 17.26 2.25 0.04 -1.78 16 21 C -0.24 -2.88 6.14 -39.40 -0.24 -3.12 16 22 C 0.12 1.59 6.16 -39.09 -0.24 1.35 16 23 O -0.30 -3.57 9.20 -19.68 -0.18 -3.75 16 24 C 0.11 0.97 1.11 -90.62 -0.10 0.87 16 25 C -0.21 -1.72 8.06 37.16 0.30 -1.42 16 26 C -0.14 -0.98 8.84 37.16 0.33 -0.65 16 27 C -0.20 -1.47 8.26 37.15 0.31 -1.17 16 28 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.86 8.56 -40.82 -0.35 6.51 16 33 H 0.41 5.45 8.36 -40.82 -0.34 5.11 16 34 H 0.17 3.01 5.78 -52.48 -0.30 2.70 16 35 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 36 H 0.17 1.60 3.07 -52.49 -0.16 1.44 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.82 4.24 -51.93 -0.22 0.60 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.65 4.57 -51.93 -0.24 0.41 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -30.06 363.02 -7.63 -37.69 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.09 Total: 11.92 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.17 Total: -1.34 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.25 Total: -50.05 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.11 Total: -17.32 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.06 -7.63 -37.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274865382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.765 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds