Wall clock time and date at job start Sat Apr 11 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47105 * 2 1 4 4 C 1.50703 * 109.47243 * 239.99533 * 2 1 3 5 5 H 1.07996 * 120.00107 * 239.99996 * 4 2 1 6 6 C 1.37880 * 119.99604 * 60.00146 * 4 2 1 7 7 N 1.31516 * 120.00149 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47173 * 90.00270 * 8 6 4 10 10 H 1.48502 * 109.47076 * 210.00142 * 8 6 4 11 11 H 1.48498 * 109.47309 * 330.00276 * 8 6 4 12 12 N 1.46506 * 109.46873 * 119.99950 * 2 1 3 13 13 C 1.34778 * 119.99877 * 274.72447 * 12 2 1 14 14 O 1.21593 * 119.99715 * 0.27461 * 13 12 2 15 15 N 1.34769 * 120.00022 * 180.27829 * 13 12 2 16 16 C 1.40281 * 120.00184 * 174.68521 * 15 13 12 17 17 C 1.38680 * 120.06385 * 335.11309 * 16 15 13 18 18 C 1.38211 * 120.01036 * 179.72153 * 17 16 15 19 19 C 1.38465 * 120.13273 * 0.55140 * 18 17 16 20 20 F 1.35101 * 119.93522 * 179.74528 * 19 18 17 21 21 C 1.38434 * 120.12935 * 359.72380 * 19 18 17 22 22 C 1.38536 * 119.98718 * 0.02562 * 21 19 18 23 23 O 1.35980 * 120.06758 * 179.97438 * 22 21 19 24 24 C 1.42900 * 116.99969 * 5.22654 * 23 22 21 25 25 C 1.53007 * 109.46915 * 55.25713 * 24 23 22 26 26 C 1.53004 * 109.47081 * 175.25426 * 24 23 22 27 27 C 1.52991 * 109.47261 * 295.25719 * 24 23 22 28 28 H 1.09007 * 109.47287 * 60.00005 * 1 2 3 29 29 H 1.09005 * 109.47592 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47266 * 300.00452 * 1 2 3 31 31 H 0.96998 * 120.00159 * 180.02562 * 7 6 4 32 32 H 0.96993 * 120.00012 * 94.99823 * 12 2 1 33 33 H 0.97003 * 119.99902 * 354.68349 * 15 13 12 34 34 H 1.08004 * 119.99486 * 359.96819 * 17 16 15 35 35 H 1.08003 * 119.93163 * 180.27530 * 18 17 16 36 36 H 1.07995 * 120.00674 * 180.02562 * 21 19 18 37 37 H 1.08998 * 109.47209 * 65.41738 * 25 24 23 38 38 H 1.08999 * 109.46961 * 185.42365 * 25 24 23 39 39 H 1.09001 * 109.47070 * 305.42072 * 25 24 23 40 40 H 1.08994 * 109.47152 * 60.00261 * 26 24 23 41 41 H 1.08999 * 109.47087 * 180.02562 * 26 24 23 42 42 H 1.08996 * 109.46929 * 300.00172 * 26 24 23 43 43 H 1.09005 * 109.47583 * 64.72913 * 27 24 23 44 44 H 1.09006 * 109.47376 * 184.73108 * 27 24 23 45 45 H 1.09004 * 109.47377 * 304.72309 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0182 -0.6906 1.1962 13 6 2.1522 -0.0169 2.3558 14 8 1.8630 1.1629 2.4103 15 7 2.6067 -0.6508 3.4549 16 6 2.8521 0.0731 4.6311 17 6 3.1351 1.4292 4.5660 18 6 3.3711 2.1426 5.7260 19 6 3.3368 1.5038 6.9540 20 9 3.5731 2.2039 8.0850 21 6 3.0605 0.1491 7.0252 22 6 2.8181 -0.5699 5.8661 23 8 2.5470 -1.9007 5.9340 24 6 2.4145 -2.4700 7.2380 25 6 1.3507 -1.7012 8.0244 26 6 1.9965 -3.9366 7.1141 27 6 3.7541 -2.3817 7.9716 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.7089 1.1613 -3.4844 32 1 2.2489 -1.6317 1.1527 33 1 2.7641 -1.6077 3.4325 34 1 3.1672 1.9287 3.6090 35 1 3.5870 3.1995 5.6741 36 1 3.0339 -0.3470 7.9840 37 1 0.3777 -1.8437 7.5543 38 1 1.3172 -2.0723 9.0487 39 1 1.5994 -0.6400 8.0303 40 1 2.7543 -4.4843 6.5539 41 1 1.8950 -4.3707 8.1087 42 1 1.0421 -3.9995 6.5914 43 1 4.0111 -1.3349 8.1342 44 1 3.6764 -2.8902 8.9326 45 1 4.5295 -2.8571 7.3708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274865382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:58 Heat of formation + Delta-G solvation = -83.861349 kcal Electronic energy + Delta-G solvation = -27955.177294 eV Core-core repulsion = 23887.967327 eV Total energy + Delta-G solvation = -4067.209967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.89744 -42.17151 -41.02154 -38.75991 -36.84399 -35.79311 -34.83835 -34.29278 -31.86609 -31.08241 -29.27676 -28.35848 -28.21671 -27.32245 -24.71618 -24.02845 -22.69491 -21.59174 -21.50174 -19.92318 -19.14115 -18.66366 -17.93264 -17.67192 -16.97931 -16.92856 -16.66770 -16.31565 -16.18679 -15.96860 -15.65505 -15.56349 -15.01911 -14.70665 -14.41834 -14.31167 -14.00961 -13.93122 -13.73709 -13.20427 -13.19105 -13.00202 -12.89453 -12.85289 -12.78217 -12.69959 -12.64197 -12.27423 -12.23025 -12.12302 -11.63937 -11.44343 -11.33205 -11.08550 -10.93448 -10.59917 -9.84858 -9.61531 -8.71765 -8.16619 -6.33741 0.04939 0.20577 1.46307 1.47175 1.57239 1.69488 2.03718 2.11032 2.42786 2.64271 3.14041 3.21536 3.38373 3.64246 3.73974 3.81874 3.95522 3.96883 4.03003 4.31421 4.54963 4.62271 4.63491 4.75180 4.75729 4.83487 4.88229 4.90280 4.94311 4.95301 5.04356 5.10563 5.18408 5.21950 5.29924 5.34819 5.39283 5.44837 5.60359 5.65446 5.76189 5.84731 6.09818 6.23258 6.36225 6.73673 7.19575 7.34613 7.64534 8.89887 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.002955 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.633069 B = 9474.278328 C =10493.951243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H 0.003 0.997 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.713 5.713 13 C 0.694 3.306 14 O -0.620 6.620 15 N -0.666 5.666 16 C 0.123 3.877 17 C -0.090 4.090 18 C -0.167 4.167 19 C 0.102 3.898 20 F -0.138 7.138 21 C -0.231 4.231 22 C 0.134 3.866 23 O -0.312 6.312 24 C 0.099 3.901 25 C -0.206 4.206 26 C -0.136 4.136 27 C -0.195 4.195 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.011 0.989 31 H 0.266 0.734 32 H 0.403 0.597 33 H 0.420 0.580 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.194 0.806 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 -9.358 23.608 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.501 6.501 15 N -0.314 5.314 16 C 0.026 3.974 17 C -0.110 4.110 18 C -0.186 4.186 19 C 0.081 3.919 20 F -0.117 7.117 21 C -0.250 4.250 22 C 0.085 3.915 23 O -0.227 6.227 24 C 0.062 3.938 25 C -0.263 4.263 26 C -0.193 4.193 27 C -0.252 4.252 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.258 0.742 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.210 0.790 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.116 0.884 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.613 -8.359 23.287 25.168 hybrid contribution 0.214 -0.512 -0.859 1.023 sum 4.827 -8.871 22.428 24.597 Atomic orbital electron populations 1.21930 0.98426 0.99408 0.99575 1.18279 0.90872 0.91822 0.80492 0.97862 1.21525 1.32679 1.13632 0.90651 0.90821 1.25780 0.94883 0.95566 1.02246 1.70051 1.36955 1.23828 1.24652 0.85325 0.78950 0.78002 0.77926 1.19664 1.21265 1.18855 1.45473 1.68714 1.13987 1.08317 1.16196 0.78326 0.85027 0.81012 1.90812 1.58412 1.16161 1.84742 1.42329 1.68353 1.12093 1.08662 1.17150 1.04648 0.91921 0.83667 1.21119 0.97550 0.92446 0.99927 1.21076 1.05449 1.01874 0.90227 1.17383 1.02680 0.89887 0.81922 1.91482 1.92098 1.78877 1.49257 1.21936 1.09223 0.93482 1.00361 1.18057 0.98095 0.84421 0.90891 1.86133 1.85388 1.18058 1.33101 1.22173 0.96307 0.95104 0.80197 1.22956 0.98861 1.02239 1.02222 1.21834 1.02166 0.90986 1.04350 1.22842 0.95996 1.04066 1.02248 0.91305 0.94189 0.97022 0.92507 0.76217 0.74198 0.84347 0.83235 0.78982 0.92180 0.88258 0.90534 0.91358 0.88000 0.92163 0.90768 0.88409 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16 2 C 0.29 14.98 2.56 44.24 0.11 15.10 16 3 H 0.00 0.21 7.57 -2.39 -0.02 0.19 16 4 C -0.55 -28.74 8.73 25.60 0.22 -28.51 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -52.31 11.32 21.45 0.24 -52.07 16 8 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 N -0.71 -29.90 5.07 -461.40 -2.34 -32.24 16 13 C 0.69 28.80 8.34 179.06 1.49 30.29 16 14 O -0.62 -30.61 13.17 -4.01 -0.05 -30.66 16 15 N -0.67 -21.50 5.30 -316.74 -1.68 -23.18 16 16 C 0.12 3.82 6.45 38.14 0.25 4.07 16 17 C -0.09 -2.94 8.72 22.37 0.19 -2.74 16 18 C -0.17 -4.54 10.02 22.32 0.22 -4.31 16 19 C 0.10 2.47 7.30 22.37 0.16 2.64 16 20 F -0.14 -3.22 17.26 44.97 0.78 -2.44 16 21 C -0.23 -5.02 6.14 22.39 0.14 -4.89 16 22 C 0.13 3.36 6.16 22.59 0.14 3.50 16 23 O -0.31 -6.81 9.20 -93.33 -0.86 -7.67 16 24 C 0.10 1.45 1.11 -10.79 -0.01 1.44 16 25 C -0.21 -2.83 8.06 71.98 0.58 -2.24 16 26 C -0.14 -1.54 8.84 71.98 0.64 -0.91 16 27 C -0.19 -2.24 8.26 71.98 0.59 -1.65 16 28 H 0.07 3.83 6.07 -2.38 -0.01 3.81 16 29 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.40 14.14 8.56 -92.71 -0.79 13.35 16 33 H 0.42 11.04 8.36 -92.71 -0.77 10.26 16 34 H 0.14 5.38 5.78 -2.91 -0.02 5.37 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.19 3.12 3.07 -2.91 -0.01 3.12 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.22 4.24 -2.39 -0.01 1.21 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.94 4.57 -2.38 -0.01 0.93 16 44 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -66.70 363.02 3.45 -63.26 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.52 Total: 34.41 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.85 Total: 6.86 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.78 Total: -107.48 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.91 Total: -38.34 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -66.70 3.45 -63.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274865382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.604 kcal (2) G-P(sol) polarization free energy of solvation -66.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds