Wall clock time and date at job start Sat Apr 11 2020 01:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47092 * 2 1 4 4 C 1.46496 * 119.99922 * 269.99613 * 3 2 1 5 5 C 1.50705 * 109.47066 * 270.00276 * 4 3 2 6 6 H 1.07996 * 120.00151 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00015 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99931 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99939 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47002 * 89.99821 * 9 7 5 11 11 H 1.48496 * 109.47414 * 210.00047 * 9 7 5 12 12 H 1.48506 * 109.47196 * 330.00654 * 9 7 5 13 13 C 1.34776 * 119.99830 * 90.00062 * 3 2 1 14 14 O 1.21281 * 119.99913 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00231 * 359.97438 * 13 3 2 16 16 N 1.46504 * 109.47213 * 180.02562 * 15 13 3 17 17 C 1.39959 * 120.00090 * 180.02562 * 16 15 13 18 18 C 1.38729 * 120.09002 * 0.02562 * 17 16 15 19 19 C 1.38217 * 119.97977 * 179.97438 * 18 17 16 20 20 C 1.38255 * 120.16301 * 0.02562 * 19 18 17 21 21 C 1.38285 * 120.17880 * 359.97438 * 20 19 18 22 22 C 1.38508 * 120.01969 * 0.02562 * 21 20 19 23 23 O 1.36004 * 120.08172 * 180.02562 * 22 21 20 24 24 C 1.42902 * 117.00364 * 359.97438 * 23 22 21 25 25 C 1.52995 * 109.47595 * 179.97438 * 24 23 22 26 26 F 1.39905 * 109.46991 * 65.00249 * 25 24 23 27 27 H 1.08998 * 109.47463 * 300.00437 * 1 2 3 28 28 H 1.09004 * 109.46534 * 60.00467 * 1 2 3 29 29 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47463 * 239.99563 * 2 1 3 31 31 H 1.09009 * 109.46969 * 119.99692 * 2 1 3 32 32 H 1.08998 * 109.46920 * 30.00251 * 4 3 2 33 33 H 1.08995 * 109.47223 * 150.00327 * 4 3 2 34 34 H 0.96998 * 119.99801 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46959 * 60.00710 * 15 13 3 36 36 H 1.08996 * 109.47334 * 300.00211 * 15 13 3 37 37 H 0.96998 * 119.99638 * 0.02562 * 16 15 13 38 38 H 1.07998 * 120.01018 * 359.96195 * 18 17 16 39 39 H 1.07994 * 119.92216 * 180.02562 * 19 18 17 40 40 H 1.07997 * 119.91586 * 179.71985 * 20 19 18 41 41 H 1.08007 * 119.99254 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47003 * 300.00295 * 24 23 22 43 43 H 1.09010 * 109.46773 * 59.99761 * 24 23 22 44 44 H 1.09001 * 109.47166 * 184.99929 * 25 24 23 45 45 H 1.09003 * 109.47454 * 305.00605 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1496 2.3903 -2.8774 8 7 5.3918 2.1840 -3.2567 9 14 3.0134 3.4358 -3.9287 10 1 3.1160 4.8560 -3.5068 11 1 3.4070 3.3136 -5.3553 12 1 1.6137 2.9693 -3.7596 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3081 2.2041 3.5859 17 6 2.1526 1.7642 4.9054 18 6 1.6990 0.4784 5.1611 19 6 1.5467 0.0462 6.4651 20 6 1.8450 0.8927 7.5167 21 6 2.2976 2.1758 7.2695 22 6 2.4529 2.6166 5.9657 23 8 2.8984 3.8781 5.7211 24 6 3.1871 4.6959 6.8569 25 6 3.6726 6.0685 6.3870 26 9 2.6366 6.7239 5.7128 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 5.7179 2.5745 -4.0826 35 1 2.6212 0.4187 2.5303 36 1 0.9432 1.0125 2.5299 37 1 2.6257 3.1033 3.4086 38 1 1.4647 -0.1847 4.3414 39 1 1.1940 -0.9551 6.6630 40 1 1.7202 0.5524 8.5341 41 1 2.5293 2.8346 8.0934 42 1 2.2853 4.8150 7.4574 43 1 3.9637 4.2222 7.4577 44 1 3.9768 6.6613 7.2497 45 1 4.5214 5.9432 5.7147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296957104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:11 Heat of formation + Delta-G solvation = -90.377690 kcal Electronic energy + Delta-G solvation = -27362.705280 eV Core-core repulsion = 23295.212743 eV Total energy + Delta-G solvation = -4067.492537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.75562 -40.33239 -39.32234 -37.60657 -35.71084 -34.99059 -32.75035 -31.42226 -30.47721 -30.09033 -29.47682 -27.96403 -26.06865 -24.06597 -23.04673 -22.37694 -22.10265 -21.11262 -18.90470 -18.27195 -17.33816 -16.94865 -16.83614 -16.44808 -16.06048 -15.72323 -15.60541 -15.34000 -15.01198 -14.84342 -14.66425 -14.15774 -14.06814 -13.76037 -13.55604 -13.24366 -12.98087 -12.87198 -12.59897 -12.37994 -12.16444 -11.83994 -11.73430 -11.51195 -11.49177 -11.31766 -11.13627 -11.01094 -10.91708 -10.80217 -10.52677 -10.19798 -10.08909 -9.57789 -9.17632 -8.60904 -8.59714 -7.82349 -7.15137 -6.10701 -4.09893 1.35442 1.56737 2.94170 3.18435 3.26865 3.31200 3.35002 3.37474 3.81521 3.91064 4.24179 4.37884 4.46599 4.67307 4.74171 4.82395 4.84117 4.93196 5.02240 5.15919 5.22535 5.23533 5.33561 5.39209 5.44187 5.49212 5.52655 5.57064 5.67626 5.72520 5.93266 6.09121 6.10290 6.28913 6.35518 6.55082 6.63086 6.72138 6.88975 7.02475 7.25691 7.49802 7.58067 7.91870 8.15927 8.43227 8.80801 8.92920 9.49149 11.02618 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003255 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.957442 B = 8600.151678 C =10238.355876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.588 5.588 4 C 0.217 3.783 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.503 3.497 14 O -0.534 6.534 15 C 0.107 3.893 16 N -0.726 5.726 17 C 0.208 3.792 18 C -0.175 4.175 19 C -0.102 4.102 20 C -0.150 4.150 21 C -0.162 4.162 22 C 0.052 3.948 23 O -0.311 6.311 24 C 0.030 3.970 25 C 0.066 3.934 26 F -0.210 7.210 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.417 0.583 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 -2.911 22.054 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.319 5.319 4 C 0.096 3.904 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.288 3.712 14 O -0.411 6.411 15 C -0.022 4.022 16 N -0.359 5.359 17 C 0.103 3.897 18 C -0.199 4.199 19 C -0.121 4.121 20 C -0.171 4.171 21 C -0.182 4.182 22 C 0.004 3.996 23 O -0.225 6.225 24 C -0.046 4.046 25 C 0.011 3.989 26 F -0.191 7.191 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.257 0.743 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.286 -2.257 21.495 23.147 hybrid contribution -0.323 0.732 -0.514 0.950 sum -8.609 -1.526 20.981 22.730 Atomic orbital electron populations 1.22244 0.96548 1.01776 1.02355 1.21508 0.93555 0.83611 1.03391 1.47890 1.63751 1.13484 1.06818 1.19679 0.97440 0.93413 0.79846 1.21314 0.95271 1.33070 1.07221 0.90740 1.24852 0.95001 0.95760 0.97346 1.69892 1.15113 1.44910 1.23564 0.86851 0.81430 0.81640 0.79769 1.19886 1.21034 1.19065 1.20191 0.78689 0.87082 0.85197 1.90680 1.45640 1.18046 1.86724 1.21151 1.01438 0.93705 0.85870 1.44398 1.73257 1.17699 1.00583 1.17217 0.97017 0.92228 0.83200 1.20518 1.07486 0.94165 0.97728 1.20780 0.99996 0.99422 0.91876 1.20623 1.03929 0.93705 0.98837 1.20929 1.05085 0.97916 0.94230 1.18387 1.03679 0.84886 0.92628 1.86068 1.81426 1.21964 1.33072 1.23372 1.01396 0.90946 0.88856 1.22053 0.88861 0.90136 0.97846 1.92822 1.61154 1.82456 1.82634 0.92916 0.92119 0.91762 0.89402 0.91278 0.95052 0.94534 0.92527 0.89676 0.89845 0.74326 0.85418 0.86125 0.86408 0.85885 0.91121 0.90487 0.88774 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -11.75 2.46 -175.06 -0.43 -12.18 16 4 C 0.22 5.24 4.23 -5.19 -0.02 5.22 16 5 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 9 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.50 10.12 7.74 -10.99 -0.09 10.04 16 14 O -0.53 -13.10 15.25 5.56 0.08 -13.01 16 15 C 0.11 1.60 3.95 -5.19 -0.02 1.58 16 16 N -0.73 -11.62 5.70 -59.67 -0.34 -11.96 16 17 C 0.21 2.95 6.67 -83.56 -0.56 2.39 16 18 C -0.18 -2.08 9.31 -39.41 -0.37 -2.45 16 19 C -0.10 -1.04 10.04 -39.58 -0.40 -1.44 16 20 C -0.15 -1.50 10.04 -39.56 -0.40 -1.90 16 21 C -0.16 -1.75 9.04 -39.46 -0.36 -2.11 16 22 C 0.05 0.70 6.70 -39.08 -0.26 0.44 16 23 O -0.31 -4.25 9.38 -19.75 -0.19 -4.43 16 24 C 0.03 0.28 5.20 37.16 0.19 0.47 16 25 C 0.07 0.57 7.93 37.16 0.29 0.86 16 26 F -0.21 -2.72 17.35 2.25 0.04 -2.68 16 27 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.07 0.83 6.44 -51.92 -0.33 0.50 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.09 1.14 7.21 -51.93 -0.37 0.77 16 36 H 0.08 1.04 7.00 -51.93 -0.36 0.68 16 37 H 0.42 7.64 6.80 -40.82 -0.28 7.36 16 38 H 0.13 1.30 6.74 -52.49 -0.35 0.95 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 1.02 6.30 -52.48 -0.33 0.69 16 42 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 43 H 0.08 0.52 7.66 -51.92 -0.40 0.12 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -35.69 374.87 -7.61 -43.31 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.48 Total: 5.80 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.06 Total: -0.54 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.00 Total: -51.02 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.10 Total: -17.45 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.69 -7.61 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296957104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.071 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds