Wall clock time and date at job start Sat Apr 11 2020 01:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00330 * 2 1 4 4 C 1.46904 * 111.00073 * 123.95989 * 2 1 3 5 5 C 1.50701 * 109.47083 * 66.04183 * 4 2 1 6 6 C 1.38319 * 119.96328 * 269.98054 * 5 4 2 7 7 C 1.38268 * 120.14650 * 180.02562 * 6 5 4 8 8 C 1.38124 * 120.07346 * 359.67982 * 7 6 5 9 9 C 1.38889 * 119.92602 * 0.61413 * 8 7 6 10 10 N 1.39801 * 120.07483 * 179.67808 * 9 8 7 11 11 C 1.34774 * 120.00206 * 326.94902 * 10 9 8 12 12 O 1.21609 * 119.99828 * 354.80529 * 11 10 9 13 13 C 1.47589 * 120.00252 * 174.80726 * 11 10 9 14 14 C 1.40029 * 119.89834 * 359.71791 * 13 11 10 15 15 C 1.36306 * 120.10787 * 179.75918 * 14 13 11 16 16 C 1.40893 * 119.89307 * 0.53970 * 15 14 13 17 17 C 1.41088 * 120.10584 * 179.68903 * 16 15 14 18 18 H 1.08000 * 120.00468 * 204.99082 * 17 16 15 19 19 C 1.40235 * 119.99569 * 24.99660 * 17 16 15 20 20 N 1.30642 * 120.00189 * 17.53474 * 19 17 16 21 21 Si 1.86799 * 120.00109 * 197.53174 * 19 17 16 22 22 H 1.48497 * 109.47084 * 94.67457 * 21 19 17 23 23 H 1.48498 * 109.47216 * 214.67743 * 21 19 17 24 24 H 1.48501 * 109.46947 * 334.67969 * 21 19 17 25 25 C 1.40906 * 119.79332 * 359.71902 * 16 15 14 26 26 C 1.36300 * 119.89640 * 359.97438 * 25 16 15 27 27 C 1.38079 * 119.96138 * 90.00221 * 5 4 2 28 28 H 1.09006 * 109.47045 * 296.04658 * 1 2 3 29 29 H 1.09002 * 109.47157 * 56.03769 * 1 2 3 30 30 H 1.09001 * 109.47463 * 176.04547 * 1 2 3 31 31 H 1.08998 * 109.47136 * 183.94931 * 3 2 1 32 32 H 1.08994 * 109.47196 * 303.95632 * 3 2 1 33 33 H 1.09001 * 109.46708 * 63.95507 * 3 2 1 34 34 H 1.09006 * 109.46608 * 306.04275 * 4 2 1 35 35 H 1.09000 * 109.47164 * 186.04398 * 4 2 1 36 36 H 1.07999 * 119.92251 * 359.97438 * 6 5 4 37 37 H 1.07996 * 119.95899 * 179.97438 * 7 6 5 38 38 H 1.07995 * 120.03590 * 180.32444 * 8 7 6 39 39 H 0.96999 * 119.99770 * 147.21942 * 10 9 8 40 40 H 1.08004 * 119.94784 * 0.03062 * 14 13 11 41 41 H 1.08001 * 120.05359 * 180.23481 * 15 14 13 42 42 H 0.97002 * 120.00522 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.05170 * 179.97438 * 25 16 15 44 44 H 1.07990 * 119.95084 * 180.02562 * 26 25 16 45 45 H 1.07999 * 120.03824 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6368 -2.2205 0.9727 6 6 0.4503 -2.7030 1.4948 7 6 0.1178 -4.0368 1.3462 8 6 0.9670 -4.8907 0.6698 9 6 2.1620 -4.4108 0.1496 10 7 3.0270 -5.2738 -0.5298 11 6 3.1153 -6.5672 -0.1613 12 8 2.5154 -6.9621 0.8201 13 6 3.9400 -7.5042 -0.9487 14 6 4.6252 -7.0485 -2.0817 15 6 5.3921 -7.9092 -2.8091 16 6 5.4856 -9.2618 -2.4260 17 6 6.2728 -10.1579 -3.1795 18 1 6.0519 -11.2150 -3.1644 19 6 7.3422 -9.6761 -3.9481 20 7 7.8296 -8.4864 -3.7160 21 14 8.0701 -10.7353 -5.3037 22 1 7.4353 -10.3857 -6.5998 23 1 9.5331 -10.4948 -5.3882 24 1 7.8205 -12.1675 -5.0007 25 6 4.7900 -9.7169 -1.2883 26 6 4.0306 -8.8476 -0.5634 27 6 2.4933 -3.0701 0.3010 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8722 0.9233 34 1 1.5611 -0.3873 2.0628 35 1 3.0797 -0.6613 1.1755 36 1 -0.2174 -2.0364 2.0204 37 1 -0.8092 -4.4103 1.7555 38 1 0.7041 -5.9312 0.5495 39 1 3.5665 -4.9408 -1.2639 40 1 4.5495 -6.0125 -2.3771 41 1 5.9232 -7.5559 -3.6806 42 1 8.5695 -8.1531 -4.2473 43 1 4.8584 -10.7530 -0.9911 44 1 3.4974 -9.1954 0.3089 45 1 3.4200 -2.6930 -0.1058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340069349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:26 Heat of formation + Delta-G solvation = 11.052494 kcal Electronic energy + Delta-G solvation = -25656.374881 eV Core-core repulsion = 22024.049912 eV Total energy + Delta-G solvation = -3632.324969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18198 -38.80076 -37.44531 -36.77025 -34.27271 -33.94631 -31.59273 -30.64122 -29.53353 -29.15561 -27.77932 -26.82926 -25.95762 -22.98897 -22.76916 -21.77472 -21.09233 -20.77100 -19.34395 -17.65985 -17.46744 -16.45222 -16.03414 -15.67947 -15.62888 -15.47618 -14.91673 -14.74574 -14.21662 -14.07763 -13.85434 -13.57757 -13.28385 -12.86315 -12.78898 -12.58304 -12.45383 -12.26685 -12.18766 -12.00528 -11.96839 -11.73171 -11.45057 -11.39997 -11.32276 -11.03161 -10.94712 -10.72519 -10.09676 -9.98146 -9.62666 -9.42941 -9.09112 -8.71298 -8.53142 -7.86980 -7.76558 -7.57699 -7.10210 -4.67373 1.44579 1.51489 2.17053 2.87407 2.92218 2.95301 2.97829 3.58124 3.61847 3.69562 3.82392 4.15076 4.50282 4.68213 4.84696 4.95550 5.08685 5.14272 5.23649 5.26309 5.38029 5.46286 5.49716 5.51891 5.59197 5.67719 5.74378 5.80864 5.92300 5.99485 6.15322 6.24586 6.52516 6.59381 6.64935 6.70918 6.73086 6.76304 6.80677 6.83585 6.95740 7.05783 7.30909 7.36996 7.57169 7.70336 7.79256 7.99577 8.06157 8.32888 8.55861 8.67812 8.89095 9.81507 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.002317 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.261717 B =12080.038454 C =13225.642584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.096 3.904 5 C -0.064 4.064 6 C -0.143 4.143 7 C -0.101 4.101 8 C -0.124 4.124 9 C 0.168 3.832 10 N -0.683 5.683 11 C 0.571 3.429 12 O -0.556 6.556 13 C -0.288 4.288 14 C -0.062 4.062 15 C -0.177 4.177 16 C 0.129 3.871 17 C -0.438 4.438 18 H 0.086 0.914 19 C 0.073 3.927 20 N -0.769 5.769 21 Si 0.915 3.085 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.238 4.238 26 C -0.018 4.018 27 C -0.135 4.135 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.408 0.592 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.288 0.712 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 14.733 3.395 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.124 4.124 4 C -0.031 4.031 5 C -0.065 4.065 6 C -0.162 4.162 7 C -0.120 4.120 8 C -0.144 4.144 9 C 0.073 3.927 10 N -0.327 5.327 11 C 0.368 3.632 12 O -0.436 6.436 13 C -0.293 4.293 14 C -0.081 4.081 15 C -0.196 4.196 16 C 0.126 3.874 17 C -0.465 4.465 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.391 5.391 21 Si 0.739 3.261 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.258 4.258 26 C -0.038 4.038 27 C -0.156 4.156 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.245 0.755 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.312 14.333 3.537 16.942 hybrid contribution 0.511 0.255 -0.230 0.615 sum -7.801 14.588 3.307 16.870 Atomic orbital electron populations 1.22479 0.87248 1.03012 1.00046 1.61968 1.08278 1.13381 1.42900 1.22394 1.00903 0.88702 1.00396 1.21041 1.00425 0.90147 0.91462 1.19331 0.94698 0.94215 0.98236 1.20863 0.96989 0.95632 1.02758 1.20941 0.99275 0.93125 0.98657 1.21241 0.92354 1.01094 0.99732 1.17824 0.89923 0.89692 0.95291 1.43657 1.43142 1.09925 1.36006 1.18737 0.80323 0.80640 0.83515 1.90653 1.48013 1.77236 1.27736 1.18778 1.12947 0.94206 1.03342 1.20474 0.95991 0.97237 0.94383 1.20977 1.02395 0.94290 1.01955 1.17816 0.88316 0.92476 0.88830 1.19904 1.09600 0.95914 1.21107 0.89547 1.26132 0.96201 0.95402 0.97131 1.69735 1.18982 1.17102 1.33318 0.86166 0.78326 0.81078 0.80566 1.18930 1.19918 1.18176 1.20722 1.07281 0.98801 0.98967 1.20358 0.94721 0.91822 0.96871 1.20704 1.00517 0.92202 1.02193 0.95837 0.91594 0.90508 0.91254 0.91303 0.95785 0.93968 0.89939 0.86846 0.86125 0.84695 0.75473 0.89272 0.86099 0.90105 0.88247 0.87985 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.14 60.06 0.55 0.73 16 2 N -0.54 -5.34 5.01 -252.72 -1.27 -6.60 16 3 C 0.02 0.19 9.57 60.06 0.57 0.76 16 4 C 0.10 0.97 5.12 -4.97 -0.03 0.94 16 5 C -0.06 -0.78 4.88 -104.65 -0.51 -1.29 16 6 C -0.14 -1.70 7.96 -39.54 -0.31 -2.02 16 7 C -0.10 -1.35 10.04 -39.61 -0.40 -1.75 16 8 C -0.12 -2.02 8.65 -39.38 -0.34 -2.36 16 9 C 0.17 2.76 6.28 -83.72 -0.53 2.23 16 10 N -0.68 -11.93 5.28 -10.79 -0.06 -11.99 16 11 C 0.57 12.03 7.50 -12.45 -0.09 11.94 16 12 O -0.56 -12.87 13.98 5.27 0.07 -12.79 16 13 C -0.29 -6.46 5.89 -104.73 -0.62 -7.07 16 14 C -0.06 -1.34 9.47 -39.61 -0.37 -1.71 16 15 C -0.18 -4.24 8.63 -39.27 -0.34 -4.58 16 16 C 0.13 3.22 5.57 -106.80 -0.60 2.62 16 17 C -0.44 -10.65 9.04 -37.75 -0.34 -10.99 16 18 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 20 N -0.77 -18.02 10.96 55.56 0.61 -17.41 16 21 Si 0.92 16.91 29.60 -169.99 -5.03 11.88 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 23 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 25 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 26 C -0.02 -0.43 9.52 -39.60 -0.38 -0.81 16 27 C -0.13 -1.88 9.61 -39.38 -0.38 -2.26 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.08 0.75 6.17 -51.93 -0.32 0.43 16 31 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 35 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 36 H 0.11 1.10 8.03 -52.49 -0.42 0.67 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.14 2.45 6.39 -52.49 -0.34 2.12 16 39 H 0.41 6.27 6.83 -40.82 -0.28 5.99 16 40 H 0.09 1.63 6.39 -52.48 -0.34 1.30 16 41 H 0.12 2.93 6.17 -52.49 -0.32 2.61 16 42 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 43 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 44 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 45 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -27.75 372.60 -10.81 -38.56 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.18 Total: 12.82 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -4.58 Total: -20.08 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.71 Total: -36.00 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.75 -10.81 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340069349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.613 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds