Wall clock time and date at job start Sat Apr 11 2020 01:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36932 * 120.00016 * 2 1 4 4 H 1.07999 * 120.00026 * 202.35753 * 3 2 1 5 5 C 1.38820 * 120.00111 * 22.35412 * 3 2 1 6 6 N 1.31621 * 119.99669 * 11.42516 * 5 3 2 7 7 Si 1.86795 * 120.00070 * 191.42792 * 5 3 2 8 8 H 1.48499 * 109.47257 * 89.99555 * 7 5 3 9 9 H 1.48499 * 109.47202 * 210.00084 * 7 5 3 10 10 H 1.48504 * 109.47350 * 329.99858 * 7 5 3 11 11 C 1.46497 * 119.99900 * 179.97438 * 2 1 3 12 12 C 1.50698 * 109.47084 * 269.99990 * 11 2 1 13 13 O 1.21282 * 120.00241 * 0.02562 * 12 11 2 14 14 N 1.34779 * 120.00067 * 179.97438 * 12 11 2 15 15 C 1.46506 * 120.00032 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46811 * 275.00426 * 15 14 12 17 17 C 1.38235 * 120.00247 * 319.72252 * 16 15 14 18 18 C 1.38233 * 120.00008 * 179.76874 * 17 16 15 19 19 C 1.38237 * 119.99851 * 0.50877 * 18 17 16 20 20 C 1.38239 * 119.99920 * 359.75024 * 19 18 17 21 21 C 1.38229 * 120.00072 * 359.97438 * 20 19 18 22 22 C 1.50695 * 109.46914 * 155.00654 * 15 14 12 23 23 C 1.38237 * 120.00443 * 39.72194 * 22 15 14 24 24 C 1.38234 * 120.00015 * 179.76416 * 23 22 15 25 25 C 1.38234 * 120.00115 * 0.51602 * 24 23 22 26 26 C 1.38242 * 119.99876 * 359.73888 * 25 24 23 27 27 C 1.38236 * 120.00049 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47288 * 274.12512 * 1 2 3 29 29 H 1.09005 * 109.46597 * 34.12448 * 1 2 3 30 30 H 1.08998 * 109.46661 * 154.12148 * 1 2 3 31 31 H 0.96998 * 119.99531 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46975 * 150.00205 * 11 2 1 33 33 H 1.09003 * 109.47213 * 30.00166 * 11 2 1 34 34 H 0.96999 * 119.99718 * 0.02562 * 14 12 11 35 35 H 1.09001 * 109.46883 * 35.00013 * 15 14 12 36 36 H 1.08003 * 119.99617 * 0.02562 * 17 16 15 37 37 H 1.07993 * 120.00226 * 180.23276 * 18 17 16 38 38 H 1.07998 * 120.00261 * 179.72301 * 19 18 17 39 39 H 1.07998 * 120.00016 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.00224 * 179.97438 * 21 20 19 41 41 H 1.08003 * 119.99480 * 0.02562 * 23 22 15 42 42 H 1.07998 * 119.99929 * 180.23474 * 24 23 22 43 43 H 1.07997 * 120.00552 * 179.72297 * 25 24 23 44 44 H 1.07998 * 119.99686 * 179.97438 * 26 25 24 45 45 H 1.07991 * 119.99990 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3558 5 6 1.5339 2.3429 0.4572 6 7 0.3851 2.2688 1.0953 7 14 2.3356 4.0049 0.1669 8 1 1.8649 4.5624 -1.1265 9 1 1.9681 4.9309 1.2681 10 1 3.8112 3.8428 0.1282 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 8 2.0543 -1.0204 2.3431 14 7 3.1108 -2.8508 1.6684 15 6 3.3544 -3.2734 3.0498 16 6 4.6057 -2.6097 3.5648 17 6 5.7082 -2.4797 2.7412 18 6 6.8542 -1.8667 3.2121 19 6 6.9013 -1.3931 4.5099 20 6 5.8005 -1.5279 5.3352 21 6 4.6526 -2.1358 4.8626 22 6 3.5248 -4.7700 3.0947 23 6 4.2302 -5.4157 2.0964 24 6 4.3905 -6.7880 2.1402 25 6 3.8364 -7.5159 3.1765 26 6 3.1265 -6.8709 4.1720 27 6 2.9702 -5.4980 4.1308 28 1 -0.3633 0.0739 1.0249 29 1 -0.3633 0.8508 -0.5766 30 1 -0.3632 -0.9246 -0.4485 31 1 -0.0454 3.0774 1.4144 32 1 3.1499 -1.1386 -0.5133 33 1 1.6085 -2.0286 -0.5130 34 1 3.4259 -3.3970 0.9313 35 1 2.5076 -2.9852 3.6727 36 1 5.6728 -2.8534 1.7285 37 1 7.7143 -1.7618 2.5675 38 1 7.7982 -0.9182 4.8793 39 1 5.8374 -1.1583 6.3493 40 1 3.7928 -2.2415 5.5074 41 1 4.6596 -4.8474 1.2846 42 1 4.9449 -7.2920 1.3623 43 1 3.9579 -8.5886 3.2084 44 1 2.6932 -7.4397 4.9814 45 1 2.4153 -4.9942 4.9082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340634510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:38 Heat of formation + Delta-G solvation = 50.499177 kcal Electronic energy + Delta-G solvation = -27089.743016 eV Core-core repulsion = 23459.128583 eV Total energy + Delta-G solvation = -3630.614433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.26854 -38.67934 -38.29278 -35.36075 -34.52955 -31.75290 -31.14381 -30.88878 -30.68244 -30.33732 -27.38112 -25.81686 -25.34496 -23.07123 -22.19311 -22.14240 -21.69912 -20.41443 -19.49661 -17.38651 -16.94769 -16.64386 -16.15104 -15.78210 -15.28017 -15.12874 -14.73137 -14.62611 -14.19855 -14.10881 -13.60293 -13.46382 -13.32121 -13.21926 -13.03838 -12.81911 -12.61389 -12.44474 -12.14949 -11.68690 -11.40298 -11.18389 -11.11414 -10.97374 -10.85540 -10.81294 -10.59903 -10.30968 -9.95823 -9.83649 -9.15611 -9.05558 -8.86367 -8.74544 -8.61127 -8.46210 -8.41743 -6.70434 -5.63558 -3.09964 1.14898 1.26500 1.55226 1.58050 3.42556 3.49235 3.51388 3.57346 3.61958 3.81122 3.96032 4.56729 4.69684 4.73586 4.84079 4.96476 5.01690 5.03848 5.14877 5.24930 5.34880 5.39927 5.48897 5.57590 5.63466 5.67012 5.72202 5.81818 5.89448 5.99664 6.11315 6.17830 6.19701 6.30646 6.32983 6.36321 6.45260 6.60178 6.64332 6.71565 6.78526 6.84430 7.03077 7.15315 7.44042 7.81457 7.90625 8.12992 8.45580 9.17362 9.29882 9.90728 10.38118 11.41158 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003858 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.963746 B = 7256.152872 C = 8516.601308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.572 5.572 3 C -0.258 4.258 4 H 0.069 0.931 5 C 0.010 3.990 6 N -0.896 5.896 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.133 3.867 12 C 0.471 3.529 13 O -0.501 6.501 14 N -0.742 5.742 15 C 0.223 3.777 16 C -0.078 4.078 17 C -0.099 4.099 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.103 4.103 22 C -0.076 4.076 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.107 4.107 28 H 0.033 0.967 29 H 0.049 0.951 30 H -0.004 1.004 31 H 0.252 0.748 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.390 0.610 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.152 -19.156 4.253 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.291 5.291 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.190 4.190 6 N -0.540 5.540 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.000 4.000 12 C 0.255 3.745 13 O -0.372 6.372 14 N -0.399 5.399 15 C 0.117 3.883 16 C -0.080 4.080 17 C -0.117 4.117 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.122 4.122 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.136 4.136 27 C -0.126 4.126 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.014 0.986 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.224 0.776 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.654 -18.399 4.963 21.362 hybrid contribution 0.652 0.698 -0.126 0.964 sum 10.306 -17.701 4.836 21.046 Atomic orbital electron populations 1.20855 0.81923 0.95499 0.99762 1.43866 1.02087 0.99751 1.83405 1.19148 0.98265 0.84889 1.36449 0.91341 1.25070 0.97668 0.98559 0.97676 1.70100 1.17694 1.26875 1.39291 0.86256 0.78892 0.84138 0.77213 1.21438 1.21714 1.20517 1.21017 0.97921 0.90381 0.90655 1.23721 0.76248 0.78944 0.95540 1.90704 1.48371 1.51872 1.46256 1.46779 1.61332 1.26031 1.05781 1.18505 0.95215 0.88160 0.86424 1.20097 0.95098 0.98599 0.94183 1.20846 0.92642 0.99092 0.99166 1.21073 0.98080 0.99017 0.95882 1.21085 0.98485 1.00319 0.94347 1.21065 0.93464 0.99569 0.99777 1.20965 0.97931 0.97988 0.95295 1.19905 0.97801 0.94425 0.95481 1.20939 0.98776 0.94585 0.98552 1.21107 0.99902 0.93984 0.98549 1.21142 0.98412 0.99768 0.94927 1.21117 0.99176 0.94394 0.98884 1.21032 0.99428 0.94079 0.98057 0.94841 0.93275 0.98594 0.93820 0.91011 0.91565 0.77588 0.88385 0.86547 0.86355 0.86468 0.86297 0.86274 0.86089 0.86038 0.86248 0.86049 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.24 9.01 59.85 0.54 4.78 16 2 N -0.57 -14.94 2.41 -182.50 -0.44 -15.38 16 3 C -0.26 -7.38 9.67 -15.06 -0.15 -7.53 16 4 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 5 C 0.01 0.28 5.13 -17.43 -0.09 0.19 16 6 N -0.90 -27.54 10.59 55.49 0.59 -26.95 16 7 Si 0.90 22.77 29.57 -169.99 -5.03 17.75 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 C 0.13 2.73 6.19 -5.20 -0.03 2.69 16 12 C 0.47 9.80 7.86 -10.99 -0.09 9.72 16 13 O -0.50 -13.29 16.09 5.56 0.09 -13.20 16 14 N -0.74 -11.43 4.28 -56.06 -0.24 -11.67 16 15 C 0.22 3.29 2.38 -70.23 -0.17 3.12 16 16 C -0.08 -1.19 4.90 -104.62 -0.51 -1.70 16 17 C -0.10 -1.41 9.12 -39.58 -0.36 -1.77 16 18 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 19 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 20 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 21 C -0.10 -1.54 9.67 -39.59 -0.38 -1.93 16 22 C -0.08 -0.91 4.94 -104.62 -0.52 -1.43 16 23 C -0.11 -1.15 8.85 -39.58 -0.35 -1.51 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.20 9.67 -39.58 -0.38 -1.58 16 28 H 0.03 0.97 7.42 -51.93 -0.39 0.58 16 29 H 0.05 1.33 7.18 -51.93 -0.37 0.96 16 30 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 33 H 0.07 1.15 7.86 -51.93 -0.41 0.74 16 34 H 0.39 4.72 6.86 -40.82 -0.28 4.44 16 35 H 0.10 1.66 7.30 -51.93 -0.38 1.28 16 36 H 0.12 1.45 7.27 -52.48 -0.38 1.07 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.64 8.04 -52.49 -0.42 1.22 16 41 H 0.12 1.10 6.45 -52.48 -0.34 0.76 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.26 8.04 -52.49 -0.42 0.84 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -36.13 378.73 -10.49 -46.63 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.30 Total: 4.65 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -4.87 Total: -7.54 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.09 Total: -54.00 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.13 -10.49 -46.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340634510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.125 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds