Wall clock time and date at job start Sat Apr 11 2020 01:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36932 * 120.00016 * 2 1 4 4 H 1.07999 * 120.00026 * 202.35753 * 3 2 1 5 5 C 1.38820 * 120.00111 * 22.35412 * 3 2 1 6 6 N 1.31621 * 119.99669 * 11.42516 * 5 3 2 7 7 Si 1.86795 * 120.00070 * 191.42792 * 5 3 2 8 8 H 1.48499 * 109.47257 * 89.99555 * 7 5 3 9 9 H 1.48499 * 109.47202 * 210.00084 * 7 5 3 10 10 H 1.48504 * 109.47350 * 329.99858 * 7 5 3 11 11 C 1.46497 * 119.99900 * 179.97438 * 2 1 3 12 12 C 1.50698 * 109.47084 * 269.99990 * 11 2 1 13 13 O 1.21282 * 120.00241 * 0.02562 * 12 11 2 14 14 N 1.34779 * 120.00067 * 179.97438 * 12 11 2 15 15 C 1.46506 * 120.00032 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46811 * 275.00426 * 15 14 12 17 17 C 1.38235 * 120.00247 * 319.72252 * 16 15 14 18 18 C 1.38233 * 120.00008 * 179.76874 * 17 16 15 19 19 C 1.38237 * 119.99851 * 0.50877 * 18 17 16 20 20 C 1.38239 * 119.99920 * 359.75024 * 19 18 17 21 21 C 1.38229 * 120.00072 * 359.97438 * 20 19 18 22 22 C 1.50695 * 109.46914 * 155.00654 * 15 14 12 23 23 C 1.38237 * 120.00443 * 39.72194 * 22 15 14 24 24 C 1.38234 * 120.00015 * 179.76416 * 23 22 15 25 25 C 1.38234 * 120.00115 * 0.51602 * 24 23 22 26 26 C 1.38242 * 119.99876 * 359.73888 * 25 24 23 27 27 C 1.38236 * 120.00049 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47288 * 274.12512 * 1 2 3 29 29 H 1.09005 * 109.46597 * 34.12448 * 1 2 3 30 30 H 1.08998 * 109.46661 * 154.12148 * 1 2 3 31 31 H 0.96998 * 119.99531 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46975 * 150.00205 * 11 2 1 33 33 H 1.09003 * 109.47213 * 30.00166 * 11 2 1 34 34 H 0.96999 * 119.99718 * 0.02562 * 14 12 11 35 35 H 1.09001 * 109.46883 * 35.00013 * 15 14 12 36 36 H 1.08003 * 119.99617 * 0.02562 * 17 16 15 37 37 H 1.07993 * 120.00226 * 180.23276 * 18 17 16 38 38 H 1.07998 * 120.00261 * 179.72301 * 19 18 17 39 39 H 1.07998 * 120.00016 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.00224 * 179.97438 * 21 20 19 41 41 H 1.08003 * 119.99480 * 0.02562 * 23 22 15 42 42 H 1.07998 * 119.99929 * 180.23474 * 24 23 22 43 43 H 1.07997 * 120.00552 * 179.72297 * 25 24 23 44 44 H 1.07998 * 119.99686 * 179.97438 * 26 25 24 45 45 H 1.07991 * 119.99990 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3558 5 6 1.5339 2.3429 0.4572 6 7 0.3851 2.2688 1.0953 7 14 2.3356 4.0049 0.1669 8 1 1.8649 4.5624 -1.1265 9 1 1.9681 4.9309 1.2681 10 1 3.8112 3.8428 0.1282 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 8 2.0543 -1.0204 2.3431 14 7 3.1108 -2.8508 1.6684 15 6 3.3544 -3.2734 3.0498 16 6 4.6057 -2.6097 3.5648 17 6 5.7082 -2.4797 2.7412 18 6 6.8542 -1.8667 3.2121 19 6 6.9013 -1.3931 4.5099 20 6 5.8005 -1.5279 5.3352 21 6 4.6526 -2.1358 4.8626 22 6 3.5248 -4.7700 3.0947 23 6 4.2302 -5.4157 2.0964 24 6 4.3905 -6.7880 2.1402 25 6 3.8364 -7.5159 3.1765 26 6 3.1265 -6.8709 4.1720 27 6 2.9702 -5.4980 4.1308 28 1 -0.3633 0.0739 1.0249 29 1 -0.3633 0.8508 -0.5766 30 1 -0.3632 -0.9246 -0.4485 31 1 -0.0454 3.0774 1.4144 32 1 3.1499 -1.1386 -0.5133 33 1 1.6085 -2.0286 -0.5130 34 1 3.4259 -3.3970 0.9313 35 1 2.5076 -2.9852 3.6727 36 1 5.6728 -2.8534 1.7285 37 1 7.7143 -1.7618 2.5675 38 1 7.7982 -0.9182 4.8793 39 1 5.8374 -1.1583 6.3493 40 1 3.7928 -2.2415 5.5074 41 1 4.6596 -4.8474 1.2846 42 1 4.9449 -7.2920 1.3623 43 1 3.9579 -8.5886 3.2084 44 1 2.6932 -7.4397 4.9814 45 1 2.4153 -4.9942 4.9082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340634510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:38 Heat of formation + Delta-G solvation = 29.633219 kcal Electronic energy + Delta-G solvation = -27090.647832 eV Core-core repulsion = 23459.128583 eV Total energy + Delta-G solvation = -3631.519249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39897 -39.83842 -39.54166 -37.12588 -36.04030 -33.40941 -32.71108 -31.88522 -31.65393 -31.26443 -29.04316 -27.88525 -26.64129 -24.11639 -23.46647 -23.11273 -23.09352 -21.61754 -20.98409 -18.85881 -18.44812 -17.94408 -17.46667 -17.06042 -16.58724 -16.39954 -16.04135 -15.82733 -15.52824 -15.43860 -15.05484 -14.83104 -14.70347 -14.35327 -14.22335 -14.15304 -13.90735 -13.64331 -13.37991 -13.22517 -13.05003 -12.81174 -12.52942 -12.30832 -12.24330 -12.04724 -12.01402 -11.89766 -11.87178 -11.86692 -10.88544 -10.54980 -10.11539 -9.84134 -9.80187 -9.75764 -9.51652 -8.79474 -7.80855 -5.29929 0.27105 0.48341 0.52203 0.55181 1.43711 1.46226 1.54430 1.98893 2.32445 2.52501 2.85409 2.91616 3.36624 3.70196 3.72856 3.87362 3.91482 4.06494 4.10577 4.18413 4.24542 4.28488 4.32021 4.41061 4.61199 4.62218 4.66130 4.70025 4.71872 4.77907 4.83122 5.00902 5.09271 5.13564 5.15063 5.30786 5.47139 5.53529 5.56368 5.59217 5.60039 5.61477 5.62846 5.75167 5.81770 6.08840 6.12127 6.29428 6.76530 7.14329 7.59709 7.86469 8.27000 9.23026 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003858 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.963746 B = 7256.152872 C = 8516.601308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.591 5.591 3 C -0.262 4.262 4 H 0.076 0.924 5 C -0.053 4.053 6 N -0.935 5.935 7 Si 0.969 3.031 8 H -0.277 1.277 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.128 3.872 12 C 0.476 3.524 13 O -0.568 6.568 14 N -0.717 5.717 15 C 0.230 3.770 16 C -0.096 4.096 17 C -0.112 4.112 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.131 4.131 22 C -0.091 4.091 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.126 4.126 28 H -0.010 1.010 29 H 0.025 0.975 30 H 0.036 0.964 31 H 0.244 0.756 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.817 -21.449 2.776 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.312 5.312 3 C -0.393 4.393 4 H 0.094 0.906 5 C -0.248 4.248 6 N -0.581 5.581 7 Si 0.797 3.203 8 H -0.203 1.203 9 H -0.228 1.228 10 H -0.193 1.193 11 C -0.003 4.003 12 C 0.261 3.739 13 O -0.444 6.444 14 N -0.373 5.373 15 C 0.125 3.875 16 C -0.097 4.097 17 C -0.130 4.130 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.134 4.134 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.145 4.145 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.248 0.752 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.167 0.833 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.381 -20.786 3.448 24.439 hybrid contribution -0.098 1.193 0.361 1.250 sum 12.283 -19.593 3.809 23.436 Atomic orbital electron populations 1.20551 0.82482 0.96420 0.97090 1.44014 1.02212 1.01101 1.83840 1.19540 0.98421 0.86163 1.35134 0.90636 1.25895 0.98492 1.02223 0.98224 1.70313 1.19419 1.27082 1.41243 0.85240 0.78426 0.79690 0.76911 1.20336 1.22758 1.19323 1.21273 0.99240 0.89155 0.90646 1.23446 0.75957 0.79577 0.94893 1.90700 1.51413 1.54334 1.47944 1.46299 1.59352 1.24439 1.07219 1.18364 0.94124 0.90297 0.84754 1.20208 0.95606 0.99247 0.94634 1.21095 0.92670 0.99500 0.99770 1.21470 0.98576 0.98137 0.96411 1.21475 0.99128 0.99858 0.94303 1.21373 0.93257 0.99174 1.00975 1.21167 0.98705 0.99253 0.95821 1.19712 0.99870 0.92536 0.97072 1.21110 0.98502 0.95525 0.98308 1.21459 0.99458 0.93400 0.99166 1.21543 0.97101 1.01264 0.94133 1.21390 0.99107 0.93646 0.99809 1.21154 1.00016 0.95182 0.98125 0.99137 0.95599 0.94547 0.94665 0.88548 0.87704 0.75218 0.91741 0.85006 0.83715 0.83754 0.84473 0.86775 0.84824 0.83283 0.83474 0.84089 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.47 9.01 127.77 1.15 10.62 16 2 N -0.59 -30.90 2.41 -731.30 -1.76 -32.66 16 3 C -0.26 -15.07 9.67 84.04 0.81 -14.26 16 4 H 0.08 4.13 7.84 -2.91 -0.02 4.11 16 5 C -0.05 -3.17 5.13 84.86 0.44 -2.74 16 6 N -0.93 -59.76 10.59 21.65 0.23 -59.53 16 7 Si 0.97 47.57 29.57 68.60 2.03 49.60 16 8 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 9 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 C 0.13 5.01 6.19 85.63 0.53 5.54 16 12 C 0.48 19.79 7.86 87.66 0.69 20.48 16 13 O -0.57 -31.32 16.09 -3.04 -0.05 -31.37 16 14 N -0.72 -21.57 4.28 -449.67 -1.92 -23.49 16 15 C 0.23 6.96 2.38 43.50 0.10 7.06 16 16 C -0.10 -2.95 4.90 -19.86 -0.10 -3.05 16 17 C -0.11 -3.05 9.12 22.27 0.20 -2.85 16 18 C -0.13 -3.16 10.05 22.27 0.22 -2.93 16 19 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 20 C -0.13 -3.52 10.05 22.27 0.22 -3.29 16 21 C -0.13 -4.08 9.67 22.27 0.22 -3.87 16 22 C -0.09 -2.17 4.94 -19.87 -0.10 -2.27 16 23 C -0.12 -2.17 8.85 22.27 0.20 -1.97 16 24 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16 25 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 26 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 27 C -0.13 -2.82 9.67 22.27 0.22 -2.60 16 28 H -0.01 -0.60 7.42 -2.39 -0.02 -0.62 16 29 H 0.03 1.43 7.18 -2.38 -0.02 1.42 16 30 H 0.04 1.57 7.85 -2.39 -0.02 1.55 16 31 H 0.24 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.10 3.32 8.03 -2.39 -0.02 3.30 16 33 H 0.11 3.29 7.86 -2.39 -0.02 3.28 16 34 H 0.41 9.01 6.86 -92.71 -0.64 8.37 16 35 H 0.06 2.37 7.30 -2.39 -0.02 2.36 16 36 H 0.13 3.00 7.27 -2.91 -0.02 2.98 16 37 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 40 H 0.11 3.48 8.04 -2.91 -0.02 3.45 16 41 H 0.13 2.04 6.45 -2.91 -0.02 2.02 16 42 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 43 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 44 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.12 2.61 8.04 -2.92 -0.02 2.59 16 Total: -1.00 -82.52 378.73 4.58 -77.95 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.36 Total: 23.58 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.70 Total: -4.08 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -3.46 Total: -115.68 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.05 Total: -31.37 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -82.52 4.58 -77.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340634510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.581 kcal (2) G-P(sol) polarization free energy of solvation -82.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds