Wall clock time and date at job start Sat Apr 11 2020 01:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 119.99794 * 2 1 4 4 H 1.07994 * 120.00123 * 15.54517 * 3 2 1 5 5 C 1.38813 * 119.99968 * 195.54148 * 3 2 1 6 6 N 1.31622 * 120.00090 * 17.61418 * 5 3 2 7 7 Si 1.86799 * 120.00062 * 197.62046 * 5 3 2 8 8 H 1.48494 * 109.47429 * 59.99580 * 7 5 3 9 9 H 1.48504 * 109.47235 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47011 * 299.99752 * 7 5 3 11 11 C 1.46507 * 120.00099 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.46638 * 120.02138 * 11 2 1 13 13 C 1.50695 * 109.47102 * 240.02247 * 11 2 1 14 14 O 1.21286 * 119.99887 * 19.99588 * 13 11 2 15 15 N 1.34773 * 120.00191 * 200.00249 * 13 11 2 16 16 C 1.46505 * 120.00063 * 179.72602 * 15 13 11 17 17 C 1.50695 * 109.47188 * 180.27196 * 16 15 13 18 18 C 1.38236 * 119.99977 * 269.72975 * 17 16 15 19 19 C 1.38239 * 120.00104 * 179.76843 * 18 17 16 20 20 C 1.38233 * 119.99727 * 0.47418 * 19 18 17 21 21 C 1.38238 * 120.00003 * 359.80245 * 20 19 18 22 22 C 1.38229 * 120.00128 * 359.94553 * 21 20 19 23 23 C 1.50697 * 109.46916 * 0.02562 * 11 2 1 24 24 C 1.38237 * 120.00288 * 299.02629 * 23 11 2 25 25 C 1.38233 * 120.00082 * 179.78555 * 24 23 11 26 26 C 1.38231 * 119.99883 * 0.44769 * 25 24 23 27 27 C 1.38236 * 120.00276 * 359.81063 * 26 25 24 28 28 C 1.38234 * 119.99920 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47224 * 264.61063 * 1 2 3 30 30 H 1.08995 * 109.47111 * 24.60947 * 1 2 3 31 31 H 1.09004 * 109.47034 * 144.61610 * 1 2 3 32 32 H 0.96999 * 119.99938 * 179.97438 * 6 5 3 33 33 H 0.97000 * 119.99582 * 359.97438 * 15 13 11 34 34 H 1.08993 * 109.47101 * 300.27319 * 16 15 13 35 35 H 1.08997 * 109.46913 * 60.27053 * 16 15 13 36 36 H 1.08001 * 120.00364 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.00075 * 180.24889 * 19 18 17 38 38 H 1.07998 * 120.00389 * 179.77021 * 20 19 18 39 39 H 1.08001 * 119.99892 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.00539 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.99497 * 0.02562 * 24 23 11 42 42 H 1.07997 * 119.99848 * 180.27528 * 25 24 23 43 43 H 1.08004 * 120.00103 * 179.82839 * 26 25 24 44 44 H 1.08001 * 120.00328 * 180.02562 * 27 26 25 45 45 H 1.07994 * 120.00055 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.6393 2.1041 0.2506 5 6 3.4997 1.2079 -0.3221 6 7 4.0425 0.1881 -0.9527 7 14 4.5461 2.6849 0.1395 8 1 4.5259 2.8646 1.6134 9 1 5.9431 2.4625 -0.3125 10 1 4.0012 3.9015 -0.5150 11 6 2.1975 -1.2688 -0.0006 12 1 2.8244 -1.3259 -0.8904 13 6 3.0635 -1.3494 1.2301 14 8 2.8196 -0.6495 2.1901 15 7 4.1091 -2.1991 1.2639 16 6 4.9545 -2.2731 2.4581 17 6 6.0478 -3.2865 2.2376 18 6 5.8457 -4.6084 2.5879 19 6 6.8469 -5.5390 2.3812 20 6 8.0535 -5.1459 1.8333 21 6 8.2576 -3.8229 1.4883 22 6 7.2547 -2.8933 1.6902 23 6 1.2182 -2.4142 -0.0017 24 6 0.3271 -2.5628 1.0446 25 6 -0.5741 -3.6109 1.0413 26 6 -0.5781 -4.5158 -0.0037 27 6 0.3166 -4.3703 -1.0474 28 6 1.2148 -3.3196 -1.0463 29 1 -0.3634 -0.0965 1.0231 30 1 -0.3633 0.9343 -0.4279 31 1 -0.3633 -0.8379 -0.5951 32 1 4.9859 0.2037 -1.1781 33 1 4.3039 -2.7590 0.4962 34 1 5.3980 -1.2962 2.6504 35 1 4.3492 -2.5720 3.3138 36 1 4.9046 -4.9148 3.0200 37 1 6.6876 -6.5725 2.6512 38 1 8.8371 -5.8721 1.6752 39 1 9.2005 -3.5156 1.0606 40 1 7.4139 -1.8597 1.4202 41 1 0.3326 -1.8577 1.8627 42 1 -1.2732 -3.7244 1.8566 43 1 -1.2804 -5.3363 -0.0049 44 1 0.3132 -5.0770 -1.8641 45 1 1.9135 -3.2057 -1.8619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340636254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:44 Heat of formation + Delta-G solvation = 50.874507 kcal Electronic energy + Delta-G solvation = -27740.634792 eV Core-core repulsion = 24110.036635 eV Total energy + Delta-G solvation = -3630.598157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.60102 -39.12491 -37.82990 -35.32774 -33.98296 -31.83479 -31.13292 -30.85211 -30.54362 -30.13820 -27.21275 -25.69214 -25.14723 -22.51279 -22.13662 -21.93241 -21.38625 -20.63349 -19.21087 -17.30387 -16.71410 -16.38901 -15.83659 -15.30257 -15.13995 -15.08225 -14.72484 -14.33180 -14.16950 -13.75354 -13.44616 -13.37922 -13.14144 -13.09144 -12.80359 -12.56487 -12.41040 -12.20759 -11.99462 -11.83303 -11.40629 -11.24889 -10.95490 -10.94719 -10.76681 -10.70906 -10.59837 -10.25786 -10.01339 -9.84985 -9.04883 -8.88497 -8.74883 -8.57772 -8.45827 -8.12378 -8.03934 -6.82578 -5.68127 -3.14639 1.33129 1.44173 1.76922 1.82834 3.42756 3.46621 3.55171 3.72453 3.99955 4.20448 4.37029 4.60006 4.87134 4.92453 5.02604 5.16805 5.29196 5.31516 5.41109 5.47540 5.51398 5.54948 5.63889 5.66843 5.85984 5.91249 5.97582 5.99882 6.12176 6.14827 6.38157 6.42830 6.45941 6.46614 6.50068 6.52741 6.73416 6.74698 6.80836 6.87880 6.90933 7.01417 7.02794 7.36544 7.42522 7.57059 7.76914 8.30452 8.56911 9.16035 9.54577 9.82839 10.26788 11.28239 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.008634 B = 0.005866 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.106813 B = 4772.122948 C = 7219.885371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.576 5.576 3 C -0.223 4.223 4 H 0.072 0.928 5 C -0.005 4.005 6 N -0.916 5.916 7 Si 0.905 3.095 8 H -0.286 1.286 9 H -0.292 1.292 10 H -0.285 1.285 11 C 0.203 3.797 12 H 0.137 0.863 13 C 0.532 3.468 14 O -0.543 6.543 15 N -0.731 5.731 16 C 0.163 3.837 17 C -0.094 4.094 18 C -0.104 4.104 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.072 4.072 24 C -0.100 4.100 25 C -0.129 4.129 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.107 4.107 29 H 0.007 0.993 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.253 0.747 33 H 0.394 0.606 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -13.752 2.236 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.297 5.297 3 C -0.352 4.352 4 H 0.090 0.910 5 C -0.201 4.201 6 N -0.564 5.564 7 Si 0.736 3.264 8 H -0.212 1.212 9 H -0.218 1.218 10 H -0.211 1.211 11 C 0.093 3.907 12 H 0.153 0.847 13 C 0.319 3.681 14 O -0.418 6.418 15 N -0.384 5.384 16 C 0.039 3.961 17 C -0.094 4.094 18 C -0.122 4.122 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.073 4.073 24 C -0.119 4.119 25 C -0.147 4.147 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.126 4.126 29 H 0.025 0.975 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.227 0.773 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.540 -13.165 2.892 13.566 hybrid contribution 0.895 0.547 0.049 1.050 sum 2.435 -12.618 2.941 13.183 Atomic orbital electron populations 1.21124 0.84345 0.99159 0.97323 1.43592 0.99984 1.01221 1.84945 1.19143 0.92449 0.85965 1.37642 0.90981 1.24661 0.97478 0.98061 0.99894 1.69673 1.12307 1.31394 1.43011 0.86266 0.79333 0.82167 0.78609 1.21243 1.21778 1.21115 1.19954 0.90160 0.82500 0.98115 0.84698 1.21822 0.80007 0.77042 0.89252 1.90543 1.71904 1.41892 1.37444 1.46071 1.30955 1.44348 1.17067 1.19993 0.89749 0.96718 0.89619 1.20063 0.95379 0.94637 0.99319 1.21106 0.99037 0.92570 0.99504 1.21107 0.93789 0.99307 1.00109 1.21133 0.97369 0.96079 0.99412 1.21142 0.99143 0.93389 1.00415 1.21187 0.92863 1.00064 0.97618 1.20304 0.96802 0.96254 0.93968 1.21291 0.94864 0.97117 0.98581 1.21068 0.99440 0.95566 0.98644 1.21007 0.99503 0.99395 0.94998 1.21035 0.96565 0.98405 0.98552 1.21118 0.98961 0.94385 0.98096 0.97540 0.93906 0.95083 0.93637 0.77288 0.91670 0.91860 0.86024 0.86242 0.86370 0.86162 0.85780 0.85887 0.86798 0.86907 0.86621 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.74 8.98 59.85 0.54 3.28 16 2 N -0.58 -14.55 2.81 -176.15 -0.50 -15.04 16 3 C -0.22 -6.21 8.81 -15.06 -0.13 -6.34 16 4 H 0.07 2.01 7.89 -52.49 -0.41 1.59 16 5 C -0.01 -0.15 4.62 -17.43 -0.08 -0.23 16 6 N -0.92 -24.72 9.71 55.49 0.54 -24.19 16 7 Si 0.91 22.75 29.59 -169.99 -5.03 17.72 16 8 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 C 0.20 4.67 2.29 -70.23 -0.16 4.50 16 12 H 0.14 3.37 5.54 -51.93 -0.29 3.09 16 13 C 0.53 12.52 4.89 -10.99 -0.05 12.46 16 14 O -0.54 -14.76 15.99 5.55 0.09 -14.67 16 15 N -0.73 -14.36 5.55 -61.48 -0.34 -14.71 16 16 C 0.16 2.87 5.80 -5.19 -0.03 2.84 16 17 C -0.09 -1.37 5.25 -104.63 -0.55 -1.92 16 18 C -0.10 -1.33 9.70 -39.58 -0.38 -1.71 16 19 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 20 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 21 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.10 -1.38 9.70 -39.59 -0.38 -1.77 16 23 C -0.07 -1.39 3.49 -104.62 -0.36 -1.76 16 24 C -0.10 -1.83 7.11 -39.58 -0.28 -2.11 16 25 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 26 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 27 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 28 C -0.11 -1.79 9.67 -39.58 -0.38 -2.17 16 29 H 0.01 0.14 7.07 -51.93 -0.37 -0.23 16 30 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 31 H 0.03 0.63 6.40 -51.93 -0.33 0.30 16 32 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.39 7.20 8.46 -40.82 -0.35 6.85 16 34 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.12 2.50 7.20 -52.48 -0.38 2.12 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.96 7.95 -52.49 -0.42 1.54 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -31.48 373.00 -10.58 -42.06 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.31 Total: 10.24 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -4.65 Total: -7.03 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.30 Total: -53.94 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.09 Total: -14.67 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.48 -10.58 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340636254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.934 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds