Wall clock time and date at job start Sat Apr 11 2020 01:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 119.99794 * 2 1 4 4 H 1.07994 * 120.00123 * 15.54517 * 3 2 1 5 5 C 1.38813 * 119.99968 * 195.54148 * 3 2 1 6 6 N 1.31622 * 120.00090 * 17.61418 * 5 3 2 7 7 Si 1.86799 * 120.00062 * 197.62046 * 5 3 2 8 8 H 1.48494 * 109.47429 * 59.99580 * 7 5 3 9 9 H 1.48504 * 109.47235 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47011 * 299.99752 * 7 5 3 11 11 C 1.46507 * 120.00099 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.46638 * 120.02138 * 11 2 1 13 13 C 1.50695 * 109.47102 * 240.02247 * 11 2 1 14 14 O 1.21286 * 119.99887 * 19.99588 * 13 11 2 15 15 N 1.34773 * 120.00191 * 200.00249 * 13 11 2 16 16 C 1.46505 * 120.00063 * 179.72602 * 15 13 11 17 17 C 1.50695 * 109.47188 * 180.27196 * 16 15 13 18 18 C 1.38236 * 119.99977 * 269.72975 * 17 16 15 19 19 C 1.38239 * 120.00104 * 179.76843 * 18 17 16 20 20 C 1.38233 * 119.99727 * 0.47418 * 19 18 17 21 21 C 1.38238 * 120.00003 * 359.80245 * 20 19 18 22 22 C 1.38229 * 120.00128 * 359.94553 * 21 20 19 23 23 C 1.50697 * 109.46916 * 0.02562 * 11 2 1 24 24 C 1.38237 * 120.00288 * 299.02629 * 23 11 2 25 25 C 1.38233 * 120.00082 * 179.78555 * 24 23 11 26 26 C 1.38231 * 119.99883 * 0.44769 * 25 24 23 27 27 C 1.38236 * 120.00276 * 359.81063 * 26 25 24 28 28 C 1.38234 * 119.99920 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47224 * 264.61063 * 1 2 3 30 30 H 1.08995 * 109.47111 * 24.60947 * 1 2 3 31 31 H 1.09004 * 109.47034 * 144.61610 * 1 2 3 32 32 H 0.96999 * 119.99938 * 179.97438 * 6 5 3 33 33 H 0.97000 * 119.99582 * 359.97438 * 15 13 11 34 34 H 1.08993 * 109.47101 * 300.27319 * 16 15 13 35 35 H 1.08997 * 109.46913 * 60.27053 * 16 15 13 36 36 H 1.08001 * 120.00364 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.00075 * 180.24889 * 19 18 17 38 38 H 1.07998 * 120.00389 * 179.77021 * 20 19 18 39 39 H 1.08001 * 119.99892 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.00539 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.99497 * 0.02562 * 24 23 11 42 42 H 1.07997 * 119.99848 * 180.27528 * 25 24 23 43 43 H 1.08004 * 120.00103 * 179.82839 * 26 25 24 44 44 H 1.08001 * 120.00328 * 180.02562 * 27 26 25 45 45 H 1.07994 * 120.00055 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.6393 2.1041 0.2506 5 6 3.4997 1.2079 -0.3221 6 7 4.0425 0.1881 -0.9527 7 14 4.5461 2.6849 0.1395 8 1 4.5259 2.8646 1.6134 9 1 5.9431 2.4625 -0.3125 10 1 4.0012 3.9015 -0.5150 11 6 2.1975 -1.2688 -0.0006 12 1 2.8244 -1.3259 -0.8904 13 6 3.0635 -1.3494 1.2301 14 8 2.8196 -0.6495 2.1901 15 7 4.1091 -2.1991 1.2639 16 6 4.9545 -2.2731 2.4581 17 6 6.0478 -3.2865 2.2376 18 6 5.8457 -4.6084 2.5879 19 6 6.8469 -5.5390 2.3812 20 6 8.0535 -5.1459 1.8333 21 6 8.2576 -3.8229 1.4883 22 6 7.2547 -2.8933 1.6902 23 6 1.2182 -2.4142 -0.0017 24 6 0.3271 -2.5628 1.0446 25 6 -0.5741 -3.6109 1.0413 26 6 -0.5781 -4.5158 -0.0037 27 6 0.3166 -4.3703 -1.0474 28 6 1.2148 -3.3196 -1.0463 29 1 -0.3634 -0.0965 1.0231 30 1 -0.3633 0.9343 -0.4279 31 1 -0.3633 -0.8379 -0.5951 32 1 4.9859 0.2037 -1.1781 33 1 4.3039 -2.7590 0.4962 34 1 5.3980 -1.2962 2.6504 35 1 4.3492 -2.5720 3.3138 36 1 4.9046 -4.9148 3.0200 37 1 6.6876 -6.5725 2.6512 38 1 8.8371 -5.8721 1.6752 39 1 9.2005 -3.5156 1.0606 40 1 7.4139 -1.8597 1.4202 41 1 0.3326 -1.8577 1.8627 42 1 -1.2732 -3.7244 1.8566 43 1 -1.2804 -5.3363 -0.0049 44 1 0.3132 -5.0770 -1.8641 45 1 1.9135 -3.2057 -1.8619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340636254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:43 Heat of formation + Delta-G solvation = 33.177655 kcal Electronic energy + Delta-G solvation = -27741.402185 eV Core-core repulsion = 24110.036635 eV Total energy + Delta-G solvation = -3631.365550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12932 -40.23135 -39.33756 -37.10065 -35.61341 -33.65456 -32.62456 -31.82393 -31.81295 -31.57782 -28.76548 -27.55739 -26.63549 -23.70256 -23.47978 -23.36148 -22.60992 -22.04846 -20.93482 -19.10414 -18.10786 -17.62763 -17.41624 -16.87997 -16.60303 -16.39691 -15.95522 -15.90078 -15.71627 -15.21816 -15.18910 -14.82282 -14.61225 -14.30318 -14.07173 -13.84029 -13.81564 -13.52427 -13.49183 -13.41992 -13.19356 -12.90761 -12.78767 -12.49912 -12.29701 -11.99497 -11.95859 -11.93209 -11.76771 -11.63748 -10.89249 -10.56388 -9.88210 -9.81966 -9.76910 -9.71358 -9.47684 -8.83345 -7.75950 -5.25420 0.31702 0.47699 0.50265 0.58982 1.35984 1.40733 1.47600 2.16028 2.45579 2.56182 2.94995 3.00801 3.33213 3.68897 3.80582 3.90241 4.05520 4.13397 4.13925 4.25221 4.27878 4.34867 4.36890 4.45654 4.59960 4.68920 4.72176 4.74085 4.75793 4.83783 4.96762 5.03339 5.03823 5.14089 5.16200 5.21260 5.45993 5.53154 5.55844 5.58857 5.67797 5.68182 5.69042 5.72974 5.94512 6.07965 6.20759 6.28786 6.83345 7.13517 7.71340 7.82804 8.22681 9.14751 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.008634 B = 0.005866 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.106813 B = 4772.122948 C = 7219.885371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.592 5.592 3 C -0.242 4.242 4 H 0.061 0.939 5 C -0.040 4.040 6 N -0.917 5.917 7 Si 0.946 3.054 8 H -0.305 1.305 9 H -0.286 1.286 10 H -0.272 1.272 11 C 0.206 3.794 12 H 0.114 0.886 13 C 0.531 3.469 14 O -0.591 6.591 15 N -0.718 5.718 16 C 0.169 3.831 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.095 4.095 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.115 4.115 29 H 0.005 0.995 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.250 0.750 33 H 0.401 0.599 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.128 0.872 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.138 0.862 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 -17.624 1.408 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.314 5.314 3 C -0.372 4.372 4 H 0.079 0.921 5 C -0.235 4.235 6 N -0.566 5.566 7 Si 0.776 3.224 8 H -0.233 1.233 9 H -0.211 1.211 10 H -0.198 1.198 11 C 0.097 3.903 12 H 0.131 0.869 13 C 0.318 3.682 14 O -0.470 6.470 15 N -0.370 5.370 16 C 0.045 3.955 17 C -0.111 4.111 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.096 4.096 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.134 4.134 28 C -0.134 4.134 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.235 0.765 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.156 0.844 43 H 0.172 0.828 44 H 0.170 0.830 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.545 -17.070 2.033 17.260 hybrid contribution 0.890 1.616 0.328 1.874 sum 2.436 -15.454 2.361 15.822 Atomic orbital electron populations 1.21119 0.82886 0.99795 0.97476 1.43826 1.01278 1.01372 1.84942 1.19284 0.93173 0.86883 1.37889 0.92119 1.25147 0.98072 0.99961 1.00328 1.69821 1.11931 1.31761 1.43043 0.85630 0.78679 0.81038 0.77008 1.23338 1.21139 1.19789 1.19736 0.90902 0.83227 0.96467 0.86883 1.21975 0.80567 0.76690 0.88937 1.90501 1.73302 1.44094 1.39147 1.45940 1.30001 1.43196 1.17899 1.19936 0.90329 0.96559 0.88658 1.19796 0.94664 0.94825 1.01772 1.21228 1.00117 0.91903 0.99461 1.21476 0.93097 1.00351 0.98843 1.21564 0.98015 0.96035 0.97509 1.21404 0.99200 0.93637 0.99987 1.21182 0.93648 1.00048 0.98800 1.20017 0.97343 0.96262 0.95975 1.21066 0.96503 0.98259 0.97729 1.21333 0.98605 0.94455 0.99952 1.21473 0.99168 0.99354 0.93431 1.21427 0.94946 0.97508 0.99505 1.21217 0.99978 0.94843 0.97332 0.97676 0.93776 0.93497 0.94046 0.76455 0.94495 0.92086 0.85399 0.83093 0.82944 0.84111 0.87456 0.89160 0.84410 0.82768 0.82968 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.93 8.98 127.77 1.15 7.08 16 2 N -0.59 -31.27 2.81 -711.23 -2.00 -33.27 16 3 C -0.24 -14.11 8.81 84.03 0.74 -13.37 16 4 H 0.06 3.56 7.89 -2.91 -0.02 3.54 16 5 C -0.04 -2.31 4.62 84.86 0.39 -1.91 16 6 N -0.92 -51.30 9.71 21.65 0.21 -51.09 16 7 Si 0.95 48.27 29.59 68.60 2.03 50.30 16 8 H -0.31 -16.48 7.11 99.48 0.71 -15.77 16 9 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 10 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 11 C 0.21 9.91 2.29 43.50 0.10 10.01 16 12 H 0.11 5.91 5.54 -2.39 -0.01 5.89 16 13 C 0.53 26.41 4.89 87.66 0.43 26.84 16 14 O -0.59 -34.35 15.99 -3.05 -0.05 -34.39 16 15 N -0.72 -29.83 5.55 -466.80 -2.59 -32.42 16 16 C 0.17 6.35 5.80 85.63 0.50 6.84 16 17 C -0.11 -3.29 5.25 -19.87 -0.10 -3.39 16 18 C -0.11 -2.65 9.70 22.27 0.22 -2.43 16 19 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 20 C -0.11 -2.06 10.05 22.27 0.22 -1.84 16 21 C -0.12 -2.74 10.05 22.27 0.22 -2.51 16 22 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 23 C -0.09 -3.70 3.49 -19.87 -0.07 -3.77 16 24 C -0.12 -4.31 7.11 22.27 0.16 -4.15 16 25 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 26 C -0.12 -2.66 10.05 22.27 0.22 -2.44 16 27 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 28 C -0.12 -3.69 9.67 22.27 0.22 -3.47 16 29 H 0.01 0.23 7.07 -2.39 -0.02 0.21 16 30 H 0.04 1.91 8.00 -2.39 -0.02 1.89 16 31 H 0.05 1.93 6.40 -2.38 -0.02 1.92 16 32 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.40 15.32 8.46 -92.71 -0.78 14.53 16 34 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 40 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.09 3.88 7.20 -2.91 -0.02 3.86 16 42 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 43 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 45 H 0.12 3.87 7.95 -2.91 -0.02 3.85 16 Total: -1.00 -72.57 373.00 3.09 -69.48 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.21 Total: 30.99 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.28 Total: 0.41 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -4.38 Total: -116.78 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.05 Total: -34.39 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -72.57 3.09 -69.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340636254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.660 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds