Wall clock time and date at job start Sat Apr 11 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47125 * 2 1 4 4 C 1.46500 * 119.99902 * 256.14536 * 3 2 1 5 5 C 1.50701 * 109.47449 * 270.00127 * 4 3 2 6 6 H 1.08000 * 119.99979 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00115 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99856 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47135 * 59.99876 * 9 7 5 11 11 H 1.48501 * 109.47112 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46997 * 299.99819 * 9 7 5 13 13 C 1.34778 * 120.00338 * 76.15432 * 3 2 1 14 14 O 1.21580 * 120.00279 * 184.52671 * 13 3 2 15 15 N 1.34779 * 119.99646 * 4.51764 * 13 3 2 16 16 C 1.40029 * 120.00138 * 195.84964 * 15 13 3 17 17 C 1.38868 * 120.07245 * 186.88843 * 16 15 13 18 18 C 1.38109 * 119.93104 * 179.81508 * 17 16 15 19 19 C 1.38292 * 120.06736 * 0.44428 * 18 17 16 20 20 C 1.38274 * 120.13976 * 359.78537 * 19 18 17 21 21 C 1.38114 * 120.07189 * 0.02562 * 20 19 18 22 22 C 1.40034 * 120.00167 * 15.85579 * 15 13 3 23 23 C 1.38862 * 120.06735 * 258.07843 * 22 15 13 24 24 C 1.38122 * 119.92699 * 179.81173 * 23 22 15 25 25 C 1.38279 * 120.06758 * 0.43763 * 24 23 22 26 26 C 1.38285 * 120.14336 * 359.79136 * 25 24 23 27 27 C 1.38114 * 120.06922 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.46966 * 72.15040 * 1 2 3 29 29 H 1.08993 * 109.47394 * 192.15865 * 1 2 3 30 30 H 1.08999 * 109.46727 * 312.15938 * 1 2 3 31 31 H 1.09002 * 109.46964 * 239.99831 * 2 1 3 32 32 H 1.09003 * 109.47255 * 120.00201 * 2 1 3 33 33 H 1.08997 * 109.47334 * 30.00938 * 4 3 2 34 34 H 1.09010 * 109.47107 * 150.00527 * 4 3 2 35 35 H 0.97002 * 119.99358 * 180.02562 * 8 7 5 36 36 H 1.07997 * 120.03360 * 0.02562 * 17 16 15 37 37 H 1.07997 * 119.97014 * 180.18517 * 18 17 16 38 38 H 1.08000 * 119.92851 * 179.76765 * 19 18 17 39 39 H 1.08008 * 119.96542 * 179.97438 * 20 19 18 40 40 H 1.08006 * 120.03361 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.03995 * 0.02562 * 23 22 15 42 42 H 1.08001 * 119.96293 * 180.18420 * 24 23 22 43 43 H 1.07999 * 119.92739 * 179.76902 * 25 24 23 44 44 H 1.07997 * 119.96440 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.03519 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5489 1.9705 -1.2318 5 6 4.0314 1.7128 -1.3141 6 1 4.5288 1.1651 -0.5272 7 6 4.7531 2.1770 -2.3933 8 7 4.1475 2.8443 -3.3513 9 14 6.5906 1.8569 -2.4956 10 1 6.8384 0.3927 -2.5013 11 1 7.1284 2.4544 -3.7442 12 1 7.2656 2.4686 -1.3228 13 6 1.9796 2.1097 1.1333 14 8 2.3075 3.2803 1.1150 15 7 1.5773 1.5405 2.2868 16 6 1.2179 2.3439 3.3759 17 6 0.9412 1.7640 4.6071 18 6 0.5908 2.5595 5.6803 19 6 0.5064 3.9314 5.5275 20 6 0.7766 4.5114 4.3018 21 6 1.1314 3.7217 3.2256 22 6 1.5187 0.1457 2.3962 23 6 0.2973 -0.5086 2.3050 24 6 0.2434 -1.8848 2.4095 25 6 1.4028 -2.6101 2.6137 26 6 2.6201 -1.9610 2.7098 27 6 2.6812 -0.5854 2.6024 28 1 -0.3633 0.3150 -0.9782 29 1 -0.3634 -1.0045 0.2164 30 1 -0.3633 0.6898 0.7618 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.0536 1.5209 -2.0924 34 1 2.3667 3.0453 -1.2283 35 1 4.6552 3.1706 -4.1107 36 1 1.0033 0.6924 4.7260 37 1 0.3784 2.1095 6.6388 38 1 0.2285 4.5510 6.3673 39 1 0.7094 5.5831 4.1855 40 1 1.3419 4.1754 2.2683 41 1 -0.6090 0.0575 2.1491 42 1 -0.7059 -2.3946 2.3356 43 1 1.3576 -3.6858 2.6988 44 1 3.5238 -2.5303 2.8698 45 1 3.6321 -0.0791 2.6779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342564573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:17:00 Heat of formation + Delta-G solvation = 81.465287 kcal Electronic energy + Delta-G solvation = -28434.219050 eV Core-core repulsion = 24804.947409 eV Total energy + Delta-G solvation = -3629.271642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.06316 -40.25217 -39.64031 -37.08123 -36.51259 -34.87305 -32.84277 -31.87242 -31.74499 -30.85778 -30.20184 -28.50001 -25.42712 -24.99053 -24.18810 -23.50734 -23.33432 -22.22229 -20.84495 -19.16034 -18.63210 -18.32759 -17.59229 -17.40063 -16.92184 -16.74557 -16.48405 -15.76421 -15.60953 -15.43586 -15.23003 -14.89112 -14.83337 -14.54463 -14.38382 -14.21421 -13.86218 -13.70626 -13.35264 -13.20883 -13.03179 -12.83022 -12.67112 -12.61704 -12.40514 -12.30136 -12.11859 -12.03749 -11.76660 -11.70567 -11.32068 -10.84096 -10.68546 -9.84738 -9.76336 -9.69355 -9.27400 -8.81629 -8.25867 -6.42301 0.18743 0.39957 0.43441 0.51411 1.32123 1.36799 1.41679 1.47011 1.97839 2.33287 2.72253 2.73550 2.96506 3.02564 3.86005 3.92507 3.96561 4.05774 4.11854 4.24028 4.27519 4.32935 4.38779 4.50614 4.51809 4.56625 4.58675 4.60500 4.75340 4.83954 4.85922 4.92965 5.06483 5.09049 5.16741 5.25295 5.31959 5.42386 5.47022 5.50804 5.54386 5.57804 5.66833 5.67762 5.79760 5.88389 5.99749 6.09823 6.19538 6.64704 6.90364 7.23523 7.45924 8.80244 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.005064 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.126928 B = 5527.568229 C = 6872.537369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.055 3.945 3 N -0.600 5.600 4 C 0.278 3.722 5 C -0.546 4.546 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.696 3.304 14 O -0.607 6.607 15 N -0.528 5.528 16 C 0.158 3.842 17 C -0.157 4.157 18 C -0.089 4.089 19 C -0.147 4.147 20 C -0.102 4.102 21 C -0.191 4.191 22 C 0.116 3.884 23 C -0.113 4.113 24 C -0.104 4.104 25 C -0.102 4.102 26 C -0.110 4.110 27 C -0.144 4.144 28 H 0.044 0.956 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.025 0.975 34 H 0.000 1.000 35 H 0.269 0.731 36 H 0.135 0.865 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.147 0.853 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.975 -12.896 17.953 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.066 4.066 3 N -0.333 5.333 4 C 0.156 3.844 5 C -0.584 4.584 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.205 1.205 13 C 0.400 3.600 14 O -0.487 6.487 15 N -0.251 5.251 16 C 0.064 3.936 17 C -0.178 4.178 18 C -0.107 4.107 19 C -0.166 4.166 20 C -0.120 4.120 21 C -0.211 4.211 22 C 0.027 3.973 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.128 4.128 27 C -0.164 4.164 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.043 0.957 34 H 0.018 0.982 35 H 0.078 0.922 36 H 0.153 0.847 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.184 0.816 43 H 0.181 0.819 44 H 0.164 0.836 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.738 -12.225 17.598 23.967 hybrid contribution 1.373 0.806 -1.037 1.900 sum -9.364 -11.419 16.561 22.189 Atomic orbital electron populations 1.22726 0.94584 1.03648 1.01327 1.22997 0.95744 0.82297 1.05580 1.47491 1.63005 1.14378 1.08460 1.18720 0.93030 0.92645 0.79978 1.21612 0.94267 1.36331 1.06240 0.93378 1.25833 1.03747 0.94294 0.94876 1.70045 1.38253 1.37556 1.10621 0.85475 0.78719 0.79197 0.77471 1.18346 1.19889 1.20546 1.16135 0.78548 0.84480 0.80800 1.90684 1.55712 1.17250 1.85068 1.42216 1.67448 1.04934 1.10463 1.18082 0.98212 0.90326 0.86982 1.20908 1.05475 1.00846 0.90588 1.21298 0.97354 0.93485 0.98555 1.21443 1.02085 0.95604 0.97495 1.21289 0.97835 1.00221 0.92703 1.21982 1.03934 0.93105 1.02100 1.17452 0.95177 0.80933 1.03711 1.21693 0.96448 0.96384 0.98664 1.21425 1.00581 0.91714 0.98528 1.21631 0.91214 1.01882 0.97244 1.21284 1.00230 0.92006 0.99293 1.21363 0.96918 0.96176 1.01950 0.93735 0.87444 0.92391 0.91396 0.85833 0.95733 0.98190 0.92234 0.84742 0.82200 0.82923 0.84792 0.85474 0.84624 0.81632 0.81900 0.83558 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 7.84 71.98 0.56 -4.14 16 2 C 0.05 1.99 5.65 86.38 0.49 2.47 16 3 N -0.60 -28.56 2.51 -844.19 -2.12 -30.68 16 4 C 0.28 15.95 5.14 85.63 0.44 16.39 16 5 C -0.55 -32.91 9.39 25.60 0.24 -32.67 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.71 5.46 84.65 0.46 1.17 16 8 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 9 Si 0.97 46.08 29.54 68.60 2.03 48.10 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 13 C 0.70 33.65 7.52 179.05 1.35 35.00 16 14 O -0.61 -34.51 12.68 -3.97 -0.05 -34.56 16 15 N -0.53 -20.09 2.47 -511.42 -1.26 -21.35 16 16 C 0.16 5.62 6.46 38.13 0.25 5.87 16 17 C -0.16 -4.25 9.26 22.39 0.21 -4.04 16 18 C -0.09 -1.91 10.04 22.25 0.22 -1.69 16 19 C -0.15 -3.32 10.04 22.29 0.22 -3.09 16 20 C -0.10 -2.99 10.04 22.25 0.22 -2.77 16 21 C -0.19 -7.30 8.91 22.39 0.20 -7.10 16 22 C 0.12 3.41 1.09 38.13 0.04 3.45 16 23 C -0.11 -2.44 5.28 22.39 0.12 -2.32 16 24 C -0.10 -1.47 8.93 22.25 0.20 -1.28 16 25 C -0.10 -1.39 9.98 22.29 0.22 -1.17 16 26 C -0.11 -2.11 9.76 22.25 0.22 -1.89 16 27 C -0.14 -4.05 8.48 22.39 0.19 -3.86 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 2.14 6.38 -2.39 -0.02 2.13 16 30 H 0.06 1.72 4.92 -2.39 -0.01 1.71 16 31 H 0.07 2.58 7.97 -2.39 -0.02 2.57 16 32 H 0.12 3.99 1.98 -26.52 -0.05 3.93 16 33 H 0.02 1.43 8.07 -2.39 -0.02 1.41 16 34 H 0.00 0.00 7.36 -2.38 -0.02 -0.02 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.13 3.20 6.91 -2.91 -0.02 3.18 16 37 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.13 5.98 5.00 -14.91 -0.07 5.90 16 41 H 0.14 2.91 6.15 -2.91 -0.02 2.89 16 42 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 44 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 45 H 0.10 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -79.82 356.48 5.63 -74.19 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.90 Total: 22.88 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.85 Total: -1.67 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -3.10 Total: -108.95 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.05 Total: -34.56 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -79.82 5.63 -74.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342564573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.658 kcal (2) G-P(sol) polarization free energy of solvation -79.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds