Wall clock time and date at job start Sat Apr 11 2020 01:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48497 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47467 * 300.00315 * 3 2 1 6 6 H 1.48506 * 109.47129 * 59.99980 * 3 2 1 7 7 C 1.37876 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.46830 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46973 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99958 * 180.27597 * 12 11 10 14 14 O 1.21352 * 119.99844 * 359.72415 * 13 12 11 15 15 C 1.49446 * 120.00048 * 179.72972 * 13 12 11 16 16 O 1.21350 * 120.00105 * 354.23893 * 15 13 12 17 17 N 1.34784 * 120.00033 * 174.24550 * 15 13 12 18 18 C 1.46497 * 119.99891 * 5.30024 * 17 15 13 19 19 C 1.52995 * 109.47442 * 82.91180 * 18 17 15 20 20 H 1.09006 * 110.43803 * 303.90826 * 19 18 17 21 21 C 1.54807 * 110.48818 * 181.22013 * 19 18 17 22 22 C 1.54998 * 102.09526 * 220.44311 * 21 19 18 23 23 O 1.44387 * 103.48794 * 37.02180 * 22 21 19 24 24 C 1.43749 * 106.97255 * 319.94129 * 23 22 21 25 25 C 1.46493 * 119.99728 * 185.29452 * 17 15 13 26 26 C 1.52997 * 117.50069 * 16.56363 * 25 17 15 27 27 C 1.53002 * 117.50453 * 307.90025 * 25 17 15 28 28 H 0.97001 * 120.00126 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46354 * 60.00619 * 9 7 2 30 30 H 1.09002 * 109.47213 * 300.00815 * 9 7 2 31 31 H 1.08999 * 109.46540 * 60.00512 * 10 9 7 32 32 H 1.08998 * 109.47196 * 300.00441 * 10 9 7 33 33 H 1.09002 * 109.47146 * 60.00260 * 11 10 9 34 34 H 1.08998 * 109.47331 * 300.00040 * 11 10 9 35 35 H 0.96993 * 120.00144 * 0.02562 * 12 11 10 36 36 H 1.09002 * 109.46848 * 202.91196 * 18 17 15 37 37 H 1.09001 * 109.47040 * 322.90813 * 18 17 15 38 38 H 1.08995 * 110.90905 * 338.64075 * 21 19 18 39 39 H 1.08998 * 110.91215 * 102.24482 * 21 19 18 40 40 H 1.09001 * 110.61740 * 278.52610 * 22 21 19 41 41 H 1.08996 * 110.75872 * 155.58955 * 22 21 19 42 42 H 1.08999 * 109.87601 * 267.08809 * 24 23 22 43 43 H 1.09006 * 109.87324 * 145.93872 * 24 23 22 44 44 H 1.09001 * 115.55178 * 162.23070 * 25 17 15 45 45 H 1.09002 * 117.50196 * 359.97438 * 26 25 17 46 46 H 1.09001 * 117.50101 * 145.01939 * 26 25 17 47 47 H 1.08998 * 117.49739 * 214.98110 * 27 25 17 48 48 H 1.08998 * 117.49374 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1006 -0.0006 13 6 1.9830 -7.3713 -0.0066 14 8 0.7899 -7.5930 -0.0075 15 6 2.9541 -8.5072 -0.0121 16 8 4.1431 -8.2884 -0.1166 17 7 2.5093 -9.7747 0.0989 18 6 1.0700 -10.0477 0.1081 19 6 0.5515 -10.0990 -1.3304 20 1 0.7902 -9.1734 -1.8543 21 6 -0.9750 -10.3562 -1.3473 22 6 -1.1240 -11.3490 -2.5282 23 8 0.0544 -12.1767 -2.4231 24 6 1.1467 -11.3093 -2.0755 25 6 3.4651 -10.8792 0.2104 26 6 4.9075 -10.5304 0.5828 27 6 4.5695 -10.9671 -0.8449 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6245 -2.5571 0.8896 31 1 2.8717 -3.6043 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 0.8539 -5.0445 -0.8914 34 1 0.8532 -5.0451 0.8885 35 1 3.3858 -5.9234 0.0005 36 1 0.8849 -11.0050 0.5954 37 1 0.5537 -9.2570 0.6525 38 1 -1.3031 -10.8113 -0.4128 39 1 -1.5227 -9.4343 -1.5427 40 1 -1.1349 -10.8157 -3.4789 41 1 -2.0264 -11.9499 -2.4162 42 1 1.6561 -10.9745 -2.9791 43 1 1.8465 -11.8365 -1.4268 44 1 3.0590 -11.8156 0.5929 45 1 5.1455 -9.4790 0.7444 46 1 5.4505 -11.2375 1.2100 47 1 4.8901 -11.9613 -1.1563 48 1 4.5845 -10.2033 -1.6224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326454511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:37 Heat of formation + Delta-G solvation = -98.118728 kcal Electronic energy + Delta-G solvation = -28010.707404 eV Core-core repulsion = 24066.339496 eV Total energy + Delta-G solvation = -3944.367908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.28021 -40.37429 -40.04195 -37.82996 -37.11425 -35.76883 -35.13070 -33.04995 -32.97779 -30.29110 -29.00969 -26.99560 -26.38340 -24.84571 -23.56195 -23.21539 -22.75147 -22.37916 -21.61811 -20.60325 -18.81697 -18.53420 -17.63243 -17.54580 -17.44839 -17.05771 -16.85998 -16.62500 -16.35384 -16.18776 -15.82939 -15.43145 -15.14435 -14.85599 -14.47166 -14.27716 -14.17397 -13.88034 -13.77800 -13.58991 -13.43087 -12.89399 -12.79359 -12.63547 -12.55044 -12.46739 -12.38063 -12.15600 -11.94729 -11.75094 -11.66963 -11.63795 -11.52637 -11.24962 -11.21064 -10.67022 -10.56428 -10.31361 -10.26380 -9.55080 -8.20737 -6.31387 0.26392 1.18024 1.40679 1.41543 1.54221 2.01701 2.29955 2.41923 2.91689 3.02645 3.13427 3.21654 3.59463 3.75598 3.80134 3.91058 4.02594 4.07416 4.07694 4.17533 4.24087 4.28553 4.32685 4.47264 4.51728 4.67511 4.73397 4.79612 4.83784 4.86046 4.88217 4.90838 4.97129 5.03375 5.08083 5.13881 5.17440 5.29019 5.32483 5.50873 5.60191 5.69840 5.83580 5.85464 5.90275 6.16631 6.23458 6.64687 6.85724 6.90089 7.38129 8.91345 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.002447 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.032586 B =11439.294337 C =12767.504858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.106 4.106 11 C 0.131 3.869 12 N -0.688 5.688 13 C 0.497 3.503 14 O -0.527 6.527 15 C 0.506 3.494 16 O -0.528 6.528 17 N -0.550 5.550 18 C 0.107 3.893 19 C -0.127 4.127 20 H 0.062 0.938 21 C -0.139 4.139 22 C 0.042 3.958 23 O -0.397 6.397 24 C 0.054 3.946 25 C 0.061 3.939 26 C -0.195 4.195 27 C -0.182 4.182 28 H 0.264 0.736 29 H -0.004 1.004 30 H -0.003 1.003 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.417 0.583 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.111 0.889 42 H 0.046 0.954 43 H 0.097 0.903 44 H 0.166 0.834 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 -27.874 -0.439 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.144 4.144 11 C 0.008 3.992 12 N -0.340 5.340 13 C 0.278 3.722 14 O -0.405 6.405 15 C 0.289 3.711 16 O -0.406 6.406 17 N -0.279 5.279 18 C -0.014 4.014 19 C -0.146 4.146 20 H 0.081 0.919 21 C -0.177 4.177 22 C -0.034 4.034 23 O -0.316 6.316 24 C -0.023 4.023 25 C -0.041 4.041 26 C -0.232 4.232 27 C -0.220 4.220 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.254 0.746 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.064 0.936 43 H 0.115 0.885 44 H 0.183 0.817 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.295 -28.026 -0.516 28.224 hybrid contribution 0.500 1.717 -0.223 1.802 sum 3.795 -26.309 -0.739 26.592 Atomic orbital electron populations 1.70093 1.07766 1.27730 1.51702 1.25958 0.95745 1.03340 0.94808 0.85416 0.79138 0.78899 0.77694 1.18527 1.20524 1.20486 1.21705 0.93663 0.92183 1.50410 0.91910 1.18924 0.94304 0.92522 0.95420 1.21634 0.98634 0.92112 1.02034 1.21436 0.91476 0.84362 1.01963 1.45906 1.12131 1.04696 1.71284 1.20347 0.88809 0.84671 0.78401 1.90656 1.16751 1.84007 1.49136 1.20151 0.87990 0.84515 0.78408 1.90634 1.16514 1.84676 1.48764 1.47297 1.08371 1.04058 1.68216 1.22335 0.77491 1.04941 0.96622 1.22791 0.96604 0.98339 0.96903 0.91914 1.23050 0.94058 1.00334 1.00230 1.23711 0.89221 0.92826 0.97616 1.88837 1.18677 1.32941 1.91182 1.23280 0.89924 0.90676 0.98376 1.22249 0.85217 0.91051 1.05619 1.23775 0.96146 1.04816 0.98491 1.23280 1.02559 1.03344 0.92804 0.92767 0.98553 0.98458 0.91576 0.91744 0.91806 0.91572 0.74644 0.87514 0.87250 0.88886 0.90067 0.92375 0.87108 0.93601 0.88495 0.81674 0.87303 0.86724 0.85991 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.11 -4.01 5.27 30.59 0.16 -3.85 16 11 C 0.13 4.28 5.67 86.38 0.49 4.77 16 12 N -0.69 -19.25 5.55 -464.41 -2.58 -21.82 16 13 C 0.50 13.58 7.69 87.27 0.67 14.26 16 14 O -0.53 -15.44 12.02 -3.25 -0.04 -15.47 16 15 C 0.51 12.38 7.47 87.27 0.65 13.03 16 16 O -0.53 -14.33 12.23 -3.25 -0.04 -14.37 16 17 N -0.55 -10.31 2.71 -799.42 -2.16 -12.48 16 18 C 0.11 1.79 4.25 86.38 0.37 2.16 16 19 C -0.13 -2.27 2.73 -9.81 -0.03 -2.30 16 20 H 0.06 1.44 7.33 -2.38 -0.02 1.42 16 21 C -0.14 -2.14 6.71 31.89 0.21 -1.93 16 22 C 0.04 0.65 7.72 72.67 0.56 1.21 16 23 O -0.40 -7.71 11.52 -148.98 -1.72 -9.43 16 24 C 0.05 0.94 7.18 72.35 0.52 1.46 16 25 C 0.06 0.89 5.02 44.99 0.23 1.11 16 26 C -0.19 -3.23 9.63 30.62 0.29 -2.93 16 27 C -0.18 -2.81 9.88 30.62 0.30 -2.51 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.42 10.68 7.96 -92.71 -0.74 9.94 16 36 H 0.11 1.21 7.94 -2.39 -0.02 1.19 16 37 H 0.11 2.24 5.32 -2.67 -0.01 2.23 16 38 H 0.09 1.19 7.87 -2.39 -0.02 1.17 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.41 6.07 -2.38 -0.01 1.40 16 44 H 0.17 1.36 8.03 -2.39 -0.02 1.34 16 45 H 0.11 2.50 5.21 -6.03 -0.03 2.47 16 46 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.07 1.54 7.60 -2.39 -0.02 1.52 16 Total: -1.00 -66.51 384.01 1.26 -65.26 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.20 Total: 21.77 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.28 Total: -3.38 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -4.45 Total: -90.04 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.80 Total: -39.27 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.51 1.26 -65.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326454511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.863 kcal (2) G-P(sol) polarization free energy of solvation -66.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds