Wall clock time and date at job start Sat Apr 11 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46490 * 120.00203 * 2 1 4 4 C 1.53001 * 109.47638 * 270.00004 * 3 2 1 5 5 H 1.09000 * 115.54346 * 330.72371 * 4 3 2 6 6 C 1.52999 * 117.49714 * 116.38834 * 4 3 2 7 7 C 1.52996 * 117.49993 * 185.01266 * 4 3 2 8 8 C 1.52995 * 117.50208 * 0.02562 * 7 4 3 9 9 C 1.53001 * 117.49654 * 145.02521 * 7 4 3 10 10 C 1.34784 * 119.99638 * 180.02562 * 2 1 3 11 11 O 1.21345 * 119.99554 * 183.64119 * 10 2 1 12 12 C 1.49446 * 120.00315 * 3.63959 * 10 2 1 13 13 O 1.21348 * 119.99896 * 354.14701 * 12 10 2 14 14 N 1.34769 * 120.00169 * 174.14426 * 12 10 2 15 15 C 1.47019 * 125.64890 * 0.04501 * 14 12 10 16 16 C 1.54423 * 107.28428 * 181.02528 * 15 14 12 17 17 C 1.55161 * 102.89742 * 22.18273 * 16 15 14 18 18 O 1.42906 * 111.00094 * 82.59432 * 17 16 15 19 19 C 1.50693 * 111.00592 * 206.41182 * 17 16 15 20 20 H 1.07999 * 120.00176 * 356.81848 * 19 17 16 21 21 C 1.37879 * 119.99661 * 176.82157 * 19 17 16 22 22 N 1.31519 * 120.00249 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99800 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47397 * 89.99818 * 23 21 19 25 25 H 1.48509 * 109.47152 * 209.99972 * 23 21 19 26 26 H 1.48502 * 109.47478 * 329.99558 * 23 21 19 27 27 C 1.47428 * 125.65022 * 179.97438 * 14 12 10 28 28 H 1.09004 * 109.47656 * 263.99802 * 1 2 3 29 29 H 1.09003 * 109.47337 * 24.00119 * 1 2 3 30 30 H 1.09007 * 109.47420 * 143.99640 * 1 2 3 31 31 H 1.09007 * 109.47394 * 30.00124 * 3 2 1 32 32 H 1.08998 * 109.47440 * 149.99703 * 3 2 1 33 33 H 1.09003 * 117.49664 * 214.98089 * 6 4 3 34 34 H 1.08997 * 117.50317 * 0.02562 * 6 4 3 35 35 H 1.08998 * 109.47160 * 59.99772 * 8 7 4 36 36 H 1.08997 * 109.47459 * 180.02562 * 8 7 4 37 37 H 1.08999 * 109.47027 * 299.99954 * 8 7 4 38 38 H 1.08995 * 109.47538 * 59.99465 * 9 7 4 39 39 H 1.08996 * 109.47191 * 180.02562 * 9 7 4 40 40 H 1.09007 * 109.46573 * 299.99494 * 9 7 4 41 41 H 1.09000 * 109.88610 * 300.43893 * 15 14 12 42 42 H 1.09004 * 109.88589 * 61.45098 * 15 14 12 43 43 H 1.09000 * 110.72416 * 263.84886 * 16 15 14 44 44 H 1.09001 * 110.76770 * 140.53944 * 16 15 14 45 45 H 0.96692 * 113.99581 * 183.18337 * 18 17 16 46 46 H 0.97001 * 119.99883 * 179.97438 * 22 21 19 47 47 H 1.09001 * 110.36513 * 37.07491 * 27 14 12 48 48 H 1.08998 * 110.46024 * 274.79561 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 2.5430 0.9052 -2.1716 6 6 1.8018 3.0147 -1.9073 7 6 3.3103 2.9589 -1.6577 8 6 3.8479 3.6697 -0.4142 9 6 4.2299 2.9819 -2.8803 10 6 2.1388 -1.1673 -0.0005 11 8 3.3504 -1.1684 0.0662 12 6 1.3938 -2.4602 -0.0833 13 8 0.1810 -2.4653 -0.0428 14 7 2.0689 -3.6205 -0.2028 15 6 3.5314 -3.7587 -0.2627 16 6 3.8439 -5.2622 -0.4255 17 6 2.5253 -5.8280 -1.0161 18 8 2.4717 -5.6312 -2.4305 19 6 2.3598 -7.2852 -0.6696 20 1 3.1363 -7.8025 -0.1258 21 6 1.2170 -7.9580 -1.0471 22 7 0.2712 -7.3278 -1.7090 23 14 1.0121 -9.7645 -0.6183 24 1 0.3489 -9.8871 0.7046 25 1 0.1787 -10.4275 -1.6533 26 1 2.3460 -10.4152 -0.5654 27 6 1.4633 -4.9615 -0.2937 28 1 -0.3634 -0.1075 1.0220 29 1 -0.3634 0.9388 -0.4180 30 1 -0.3634 -0.8314 -0.6041 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1383 0.5139 33 1 1.4646 3.0679 -2.9425 34 1 1.1924 3.5584 -1.1855 35 1 4.4759 2.9833 0.1537 36 1 4.4368 4.5356 -0.7167 37 1 3.0137 3.9970 0.2064 38 1 3.6323 2.8832 -3.7865 39 1 4.7767 3.9244 -2.9060 40 1 4.9364 2.1540 -2.8191 41 1 3.9215 -3.2046 -1.1164 42 1 3.9773 -3.3827 0.6581 43 1 4.0604 -5.7179 0.5406 44 1 4.6721 -5.4120 -1.1181 45 1 1.6451 -5.9247 -2.8373 46 1 -0.5326 -7.8013 -1.9748 47 1 0.5437 -4.9237 -0.8777 48 1 1.2635 -5.3577 0.7019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328001435.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:17:24 Heat of formation + Delta-G solvation = -81.501214 kcal Electronic energy + Delta-G solvation = -28699.706808 eV Core-core repulsion = 24756.059489 eV Total energy + Delta-G solvation = -3943.647319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55826 -39.11483 -38.15789 -37.24330 -35.48595 -34.11415 -32.21910 -30.22633 -30.12030 -28.26379 -27.90469 -27.36187 -26.69009 -25.32181 -23.32047 -22.03529 -20.92702 -19.66829 -18.99953 -18.77079 -17.25350 -16.83670 -16.67374 -15.98828 -15.70024 -15.21311 -15.02762 -14.85187 -14.45666 -14.18105 -13.96586 -13.70541 -13.15370 -13.11509 -12.99288 -12.90854 -12.74326 -12.64596 -12.37538 -12.30253 -12.23808 -12.10448 -11.70813 -11.65438 -11.50172 -11.33746 -11.06833 -10.91648 -10.62448 -10.56042 -10.50084 -10.20573 -10.06235 -9.85337 -9.39077 -8.94069 -8.70515 -8.68960 -8.41999 -7.86767 -6.31598 -4.40852 1.82257 2.57752 3.19152 3.26993 3.30055 3.48663 3.59341 3.77819 4.24258 4.41658 4.50042 4.56497 4.66796 4.83728 4.96182 5.04376 5.25961 5.28325 5.39830 5.46143 5.49282 5.53238 5.57640 5.66949 5.68564 5.73148 5.74586 5.80148 5.85601 5.91443 5.98402 6.05078 6.09599 6.12517 6.30598 6.45755 6.51429 6.72932 6.81102 6.86268 7.14407 7.18996 7.29969 7.71164 7.82684 7.98818 8.07841 8.47115 8.63239 9.28168 9.38734 10.75723 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.002815 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.096298 B = 9943.324444 C =10300.167092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.591 5.591 3 C 0.146 3.854 4 C -0.159 4.159 5 H 0.106 0.894 6 C -0.171 4.171 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.116 4.116 10 C 0.508 3.492 11 O -0.517 6.517 12 C 0.508 3.492 13 O -0.533 6.533 14 N -0.573 5.573 15 C 0.112 3.888 16 C -0.121 4.121 17 C 0.249 3.751 18 O -0.582 6.582 19 C -0.536 4.536 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.895 5.895 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.091 3.909 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.383 0.617 46 H 0.271 0.729 47 H 0.088 0.912 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 19.119 1.877 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.325 5.325 3 C 0.024 3.976 4 C -0.178 4.178 5 H 0.124 0.876 6 C -0.208 4.208 7 C -0.123 4.123 8 C -0.174 4.174 9 C -0.173 4.173 10 C 0.291 3.709 11 O -0.392 6.392 12 C 0.291 3.709 13 O -0.413 6.413 14 N -0.305 5.305 15 C -0.011 4.011 16 C -0.159 4.159 17 C 0.208 3.792 18 O -0.391 6.391 19 C -0.575 4.575 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.534 5.534 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.030 4.030 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.234 0.766 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.335 19.378 1.972 19.761 hybrid contribution -0.946 -1.090 0.091 1.446 sum 2.389 18.288 2.063 18.558 Atomic orbital electron populations 1.22386 0.77674 1.04088 1.03322 1.47659 1.08185 1.04832 1.71826 1.21069 0.97808 0.84165 0.94578 1.22897 1.04605 0.91948 0.98348 0.87571 1.23344 0.94692 1.00455 1.02298 1.21577 0.92342 1.00449 0.97887 1.21360 1.00909 0.99711 0.95423 1.21357 0.98685 1.02011 0.95216 1.20430 0.87540 0.85337 0.77548 1.90712 1.13545 1.87189 1.47798 1.19572 0.87194 0.84195 0.79985 1.90615 1.13178 1.86021 1.51437 1.48658 1.08946 1.06593 1.66259 1.22151 0.79542 0.97973 1.01444 1.22730 0.99563 0.92498 1.01139 1.19627 0.88175 0.92053 0.79337 1.86109 1.44246 1.86857 1.21883 1.21483 1.04025 0.94483 1.37468 0.91357 1.25092 0.95188 0.99134 0.93859 1.69649 1.08314 1.37096 1.38306 0.86377 0.78304 0.83866 0.78214 1.20411 1.20985 1.19656 1.23496 1.00156 0.77839 1.01487 0.92493 0.91977 0.87199 0.90196 0.89175 0.88868 0.88802 0.91886 0.92099 0.92457 0.92506 0.92150 0.91979 0.91462 0.91566 0.90368 0.90530 0.76610 0.91919 0.89325 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 9.55 59.85 0.57 1.42 16 2 N -0.59 -8.35 2.87 -182.08 -0.52 -8.87 16 3 C 0.15 1.65 4.77 -4.05 -0.02 1.63 16 4 C -0.16 -1.72 5.73 -90.62 -0.52 -2.24 16 5 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 6 C -0.17 -1.48 9.47 -26.73 -0.25 -1.73 16 7 C -0.12 -1.10 2.70 -154.51 -0.42 -1.52 16 8 C -0.12 -0.90 8.86 37.15 0.33 -0.57 16 9 C -0.12 -0.99 9.85 37.16 0.37 -0.63 16 10 C 0.51 8.94 7.69 -11.58 -0.09 8.85 16 11 O -0.52 -9.66 13.72 5.50 0.08 -9.58 16 12 C 0.51 10.26 7.80 -11.59 -0.09 10.17 16 13 O -0.53 -11.29 13.39 5.50 0.07 -11.22 16 14 N -0.57 -12.20 3.33 -170.95 -0.57 -12.77 16 15 C 0.11 2.18 5.50 -3.01 -0.02 2.17 16 16 C -0.12 -2.49 6.13 -24.84 -0.15 -2.64 16 17 C 0.25 6.00 0.88 -89.61 -0.08 5.93 16 18 O -0.58 -14.85 13.17 -35.23 -0.46 -15.31 16 19 C -0.54 -13.77 8.25 -34.44 -0.28 -14.06 16 20 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 21 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 22 N -0.89 -23.39 10.69 55.43 0.59 -22.80 16 23 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 C 0.09 2.15 5.51 -2.51 -0.01 2.14 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 30 H 0.11 1.68 5.35 -51.93 -0.28 1.41 16 31 H 0.08 0.71 7.81 -51.92 -0.41 0.31 16 32 H 0.09 1.10 7.00 -51.93 -0.36 0.74 16 33 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 34 H 0.09 0.70 7.94 -51.93 -0.41 0.29 16 35 H 0.06 0.51 7.83 -51.93 -0.41 0.11 16 36 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 37 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 38 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 39 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.33 7.72 -51.93 -0.40 0.93 16 42 H 0.07 1.21 7.57 -51.93 -0.39 0.81 16 43 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.38 9.99 7.25 45.56 0.33 10.32 16 46 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 47 H 0.09 2.31 7.47 -51.93 -0.39 1.92 16 48 H 0.07 1.62 8.03 -51.93 -0.42 1.21 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -28.24 384.38 -8.07 -36.31 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.26 Total: 12.76 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -0.76 Total: 10.63 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.50 Total: -44.44 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.31 Total: -36.11 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.24 -8.07 -36.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328001435.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.194 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds