Wall clock time and date at job start Sat Apr 11 2020 01:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48500 * 109.46824 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47018 * 299.99878 * 3 2 1 6 6 H 1.48494 * 109.47427 * 59.99873 * 3 2 1 7 7 C 1.39034 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99508 * 229.77666 * 7 2 1 9 9 N 1.36781 * 120.00218 * 49.77615 * 7 2 1 10 10 C 1.34782 * 119.99887 * 175.50755 * 9 7 2 11 11 O 1.21860 * 120.00026 * 8.76737 * 10 9 7 12 12 C 1.41192 * 119.99657 * 188.77357 * 10 9 7 13 13 C 1.35890 * 119.99729 * 187.31331 * 12 10 9 14 14 C 1.41368 * 120.00186 * 179.97438 * 13 12 10 15 15 C 1.37169 * 125.47115 * 180.02562 * 14 13 12 16 16 C 1.37339 * 113.23326 * 180.02562 * 15 14 13 17 17 C 1.34095 * 115.10352 * 0.02562 * 16 15 14 18 18 Cl 1.73593 * 124.49802 * 180.02562 * 17 16 15 19 19 S 1.70609 * 111.00389 * 359.72511 * 17 16 15 20 20 C 1.46493 * 120.00098 * 355.49999 * 9 7 2 21 21 C 1.55238 * 110.58731 * 235.13903 * 20 9 7 22 22 C 1.54881 * 102.58981 * 203.34178 * 21 20 9 23 23 C 1.54267 * 104.31678 * 37.92869 * 22 21 20 24 24 C 1.53873 * 106.59920 * 336.32811 * 23 22 21 25 25 H 0.97000 * 119.99769 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.00071 * 7.31529 * 12 10 9 27 27 H 1.08007 * 120.00295 * 0.02562 * 13 12 10 28 28 H 1.08004 * 123.38141 * 0.03364 * 15 14 13 29 29 H 1.07997 * 122.45003 * 180.02562 * 16 15 14 30 30 H 1.09000 * 110.43225 * 357.72954 * 20 9 7 31 31 H 1.08997 * 110.89848 * 85.04674 * 21 20 9 32 32 H 1.09000 * 110.76220 * 321.57525 * 21 20 9 33 33 H 1.09002 * 110.48942 * 279.18718 * 22 21 20 34 34 H 1.09001 * 110.48969 * 156.67395 * 22 21 20 35 35 H 1.09006 * 110.02981 * 95.60962 * 23 22 21 36 36 H 1.09002 * 110.03477 * 216.99135 * 23 22 21 37 37 H 1.09000 * 110.03789 * 119.28159 * 24 23 22 38 38 H 1.09002 * 110.03131 * 240.66844 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7078 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8891 2.3965 1.2124 7 6 2.0090 -1.2041 -0.0005 8 1 2.8021 -1.3700 0.7136 9 7 1.6886 -2.1785 -0.9054 10 6 2.4204 -3.3086 -0.9663 11 8 3.2633 -3.5352 -0.1159 12 6 2.2104 -4.2299 -2.0154 13 6 2.8388 -5.4347 -1.9975 14 6 2.6282 -6.3574 -3.0476 15 6 3.2019 -7.5998 -3.1425 16 6 2.8220 -8.2873 -4.2691 17 6 1.9683 -7.6359 -5.0723 18 17 1.3316 -8.2750 -6.5554 19 16 1.5845 -6.0990 -4.4388 20 6 0.5498 -1.9937 -1.8082 21 6 -0.4458 -3.1779 -1.6804 22 6 -1.1863 -3.1447 -3.0403 23 6 -0.0909 -2.7765 -4.0623 24 6 1.0130 -2.0448 -3.2789 25 1 -0.4850 0.8401 0.0004 26 1 1.5505 -3.9771 -2.8320 27 1 3.4985 -5.6877 -1.1806 28 1 3.8836 -7.9974 -2.4053 29 1 3.1843 -9.2799 -4.4920 30 1 0.0476 -1.0492 -1.5990 31 1 -1.1416 -3.0138 -0.8576 32 1 0.0881 -4.1198 -1.5542 33 1 -1.9690 -2.3860 -3.0302 34 1 -1.6081 -4.1234 -3.2692 35 1 0.3121 -3.6802 -4.5195 36 1 -0.5018 -2.1212 -4.8303 37 1 1.9518 -2.5933 -3.3559 38 1 1.1386 -1.0339 -3.6668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172454351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:05 Heat of formation + Delta-G solvation = 28.775885 kcal Electronic energy + Delta-G solvation = -23243.538245 eV Core-core repulsion = 19818.750085 eV Total energy + Delta-G solvation = -3424.788161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.76347 -38.00273 -36.76874 -36.54560 -34.67246 -33.02908 -31.97143 -28.66100 -28.26653 -27.20828 -25.56924 -24.20431 -22.17146 -20.33510 -19.97067 -19.64840 -18.61286 -17.75424 -16.76884 -16.16114 -15.59077 -15.04843 -14.85782 -14.34692 -13.96253 -13.84067 -13.63728 -13.39830 -13.10420 -12.99312 -12.91722 -12.26441 -12.21454 -11.94723 -11.77590 -11.52653 -11.18425 -10.99953 -10.93340 -10.88222 -10.73000 -10.62628 -10.50373 -10.27647 -10.17084 -9.85455 -9.68306 -8.86533 -8.55821 -8.43797 -8.09098 -7.60376 -7.00511 -3.77426 0.33088 1.21017 1.93637 2.02117 2.27852 2.89151 3.04322 3.11736 3.23245 3.86467 4.11415 4.66663 4.72380 5.08278 5.11670 5.20226 5.30424 5.40805 5.53396 5.65971 5.82934 5.84764 5.94235 5.99723 6.04044 6.14004 6.18163 6.26783 6.29745 6.35610 6.45036 6.45981 6.65041 6.79953 6.86705 6.91051 7.02091 7.21828 7.92479 8.20009 8.93619 9.16441 9.91454 10.02194 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.003725 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.546025 B = 7515.738311 C = 8301.685471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.311 4.311 8 H 0.120 0.880 9 N -0.400 5.400 10 C 0.434 3.566 11 O -0.608 6.608 12 C -0.152 4.152 13 C -0.096 4.096 14 C -0.120 4.120 15 C -0.151 4.151 16 C -0.109 4.109 17 C -0.213 4.213 18 Cl -0.031 7.031 19 S 0.208 5.792 20 C 0.108 3.892 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.156 4.156 25 H 0.279 0.721 26 H 0.133 0.867 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 -8.272 -10.999 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.157 4.157 3 Si 0.715 3.285 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.438 4.438 8 H 0.138 0.862 9 N -0.112 5.112 10 C 0.231 3.769 11 O -0.499 6.499 12 C -0.177 4.177 13 C -0.120 4.120 14 C -0.238 4.238 15 C -0.180 4.180 16 C -0.142 4.142 17 C -0.357 4.357 18 Cl -0.003 7.003 19 S 0.474 5.526 20 C 0.003 3.997 21 C -0.174 4.174 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.194 4.194 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.098 -7.130 -11.229 13.658 hybrid contribution 0.996 -0.539 0.148 1.142 sum -2.102 -7.669 -11.082 13.640 Atomic orbital electron populations 1.70256 1.07356 1.29458 1.35592 1.25357 0.94448 1.00566 0.95315 0.86454 0.82265 0.81355 0.78450 1.18263 1.19844 1.20329 1.19863 1.17452 0.90966 1.15539 0.86242 1.44067 1.23429 1.14786 1.28931 1.16261 0.88155 0.83235 0.89222 1.90669 1.39496 1.76414 1.43271 1.23040 0.99645 0.95101 0.99869 1.20326 1.02089 0.92668 0.96933 1.22789 1.02653 0.99016 0.99352 1.20586 1.04283 0.93687 0.99473 1.19896 0.98432 1.01587 0.94287 1.24662 1.10415 1.03212 0.97434 1.98332 1.85478 1.85731 1.30733 1.83255 1.43898 1.10662 1.14827 1.22807 0.87241 1.02580 0.87066 1.23180 0.98774 0.98370 0.97088 1.22296 0.97632 1.01042 0.95069 1.22150 0.96327 0.99701 0.98002 1.23020 0.99009 1.00857 0.96504 0.91027 0.84952 0.84117 0.83284 0.84121 0.84202 0.90911 0.91336 0.91457 0.91884 0.92205 0.91738 0.90654 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.61 11.25 55.50 0.62 -17.99 16 2 C 0.06 1.31 4.61 -17.45 -0.08 1.23 16 3 Si 0.89 18.28 29.69 -169.99 -5.05 13.24 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.31 -8.13 9.31 -15.05 -0.14 -8.27 16 8 H 0.12 3.36 7.40 -52.48 -0.39 2.97 16 9 N -0.40 -9.73 2.66 -109.11 -0.29 -10.02 16 10 C 0.43 10.66 6.74 -15.14 -0.10 10.55 16 11 O -0.61 -17.08 15.74 5.05 0.08 -17.00 16 12 C -0.15 -3.03 5.54 -39.30 -0.22 -3.25 16 13 C -0.10 -1.74 9.36 -39.23 -0.37 -2.11 16 14 C -0.12 -1.85 6.20 -38.78 -0.24 -2.09 16 15 C -0.15 -2.03 10.25 -40.30 -0.41 -2.45 16 16 C -0.11 -1.36 10.08 -41.37 -0.42 -1.78 16 17 C -0.21 -2.77 6.82 29.27 0.20 -2.57 16 18 Cl -0.03 -0.36 29.27 -51.86 -1.52 -1.88 16 19 S 0.21 2.86 20.58 -107.50 -2.21 0.64 16 20 C 0.11 2.22 2.90 -66.08 -0.19 2.03 16 21 C -0.14 -2.49 5.97 -24.55 -0.15 -2.63 16 22 C -0.12 -1.77 6.82 -25.08 -0.17 -1.94 16 23 C -0.12 -1.75 6.19 -25.61 -0.16 -1.91 16 24 C -0.16 -2.71 5.64 -25.61 -0.14 -2.85 16 25 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 26 H 0.13 2.34 2.00 -52.49 -0.10 2.24 16 27 H 0.14 2.68 7.48 -52.48 -0.39 2.29 16 28 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.14 3.10 4.72 -51.93 -0.25 2.86 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.29 5.36 -51.93 -0.28 1.01 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.79 6.52 -51.93 -0.34 0.45 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.37 5.14 -51.93 -0.27 1.10 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -27.61 330.70 -10.08 -37.69 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.11 Total: 8.36 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.59 Total: -18.03 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.33 Total: -28.01 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.08 Total: -17.00 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.05 Total: 13.24 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.21 Total: 0.64 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.61 -10.08 -37.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172454351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.469 kcal (2) G-P(sol) polarization free energy of solvation -27.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds