Wall clock time and date at job start Sat Apr 11 2020 01:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48500 * 109.46824 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47018 * 299.99878 * 3 2 1 6 6 H 1.48494 * 109.47427 * 59.99873 * 3 2 1 7 7 C 1.39034 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99508 * 229.77666 * 7 2 1 9 9 N 1.36781 * 120.00218 * 49.77615 * 7 2 1 10 10 C 1.34782 * 119.99887 * 175.50755 * 9 7 2 11 11 O 1.21860 * 120.00026 * 8.76737 * 10 9 7 12 12 C 1.41192 * 119.99657 * 188.77357 * 10 9 7 13 13 C 1.35890 * 119.99729 * 187.31331 * 12 10 9 14 14 C 1.41368 * 120.00186 * 179.97438 * 13 12 10 15 15 C 1.37169 * 125.47115 * 180.02562 * 14 13 12 16 16 C 1.37339 * 113.23326 * 180.02562 * 15 14 13 17 17 C 1.34095 * 115.10352 * 0.02562 * 16 15 14 18 18 Cl 1.73593 * 124.49802 * 180.02562 * 17 16 15 19 19 S 1.70609 * 111.00389 * 359.72511 * 17 16 15 20 20 C 1.46493 * 120.00098 * 355.49999 * 9 7 2 21 21 C 1.55238 * 110.58731 * 235.13903 * 20 9 7 22 22 C 1.54881 * 102.58981 * 203.34178 * 21 20 9 23 23 C 1.54267 * 104.31678 * 37.92869 * 22 21 20 24 24 C 1.53873 * 106.59920 * 336.32811 * 23 22 21 25 25 H 0.97000 * 119.99769 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.00071 * 7.31529 * 12 10 9 27 27 H 1.08007 * 120.00295 * 0.02562 * 13 12 10 28 28 H 1.08004 * 123.38141 * 0.03364 * 15 14 13 29 29 H 1.07997 * 122.45003 * 180.02562 * 16 15 14 30 30 H 1.09000 * 110.43225 * 357.72954 * 20 9 7 31 31 H 1.08997 * 110.89848 * 85.04674 * 21 20 9 32 32 H 1.09000 * 110.76220 * 321.57525 * 21 20 9 33 33 H 1.09002 * 110.48942 * 279.18718 * 22 21 20 34 34 H 1.09001 * 110.48969 * 156.67395 * 22 21 20 35 35 H 1.09006 * 110.02981 * 95.60962 * 23 22 21 36 36 H 1.09002 * 110.03477 * 216.99135 * 23 22 21 37 37 H 1.09000 * 110.03789 * 119.28159 * 24 23 22 38 38 H 1.09002 * 110.03131 * 240.66844 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7078 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8891 2.3965 1.2124 7 6 2.0090 -1.2041 -0.0005 8 1 2.8021 -1.3700 0.7136 9 7 1.6886 -2.1785 -0.9054 10 6 2.4204 -3.3086 -0.9663 11 8 3.2633 -3.5352 -0.1159 12 6 2.2104 -4.2299 -2.0154 13 6 2.8388 -5.4347 -1.9975 14 6 2.6282 -6.3574 -3.0476 15 6 3.2019 -7.5998 -3.1425 16 6 2.8220 -8.2873 -4.2691 17 6 1.9683 -7.6359 -5.0723 18 17 1.3316 -8.2750 -6.5554 19 16 1.5845 -6.0990 -4.4388 20 6 0.5498 -1.9937 -1.8082 21 6 -0.4458 -3.1779 -1.6804 22 6 -1.1863 -3.1447 -3.0403 23 6 -0.0909 -2.7765 -4.0623 24 6 1.0130 -2.0448 -3.2789 25 1 -0.4850 0.8401 0.0004 26 1 1.5505 -3.9771 -2.8320 27 1 3.4985 -5.6877 -1.1806 28 1 3.8836 -7.9974 -2.4053 29 1 3.1843 -9.2799 -4.4920 30 1 0.0476 -1.0492 -1.5990 31 1 -1.1416 -3.0138 -0.8576 32 1 0.0881 -4.1198 -1.5542 33 1 -1.9690 -2.3860 -3.0302 34 1 -1.6081 -4.1234 -3.2692 35 1 0.3121 -3.6802 -4.5195 36 1 -0.5018 -2.1212 -4.8303 37 1 1.9518 -2.5933 -3.3559 38 1 1.1386 -1.0339 -3.6668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172454351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:04 Heat of formation + Delta-G solvation = 15.056251 kcal Electronic energy + Delta-G solvation = -23244.133173 eV Core-core repulsion = 19818.750085 eV Total energy + Delta-G solvation = -3425.383089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38836 -39.15135 -38.34097 -37.65430 -36.30247 -34.53217 -33.73379 -30.01912 -29.60892 -28.64642 -27.12818 -25.58338 -23.58746 -21.78537 -21.22602 -20.90047 -20.17619 -19.32189 -18.15453 -17.65588 -17.02696 -16.45056 -16.39899 -15.97522 -15.51564 -15.25020 -14.91570 -14.79936 -14.47131 -14.38962 -14.15268 -13.90236 -13.58400 -13.24246 -13.19337 -12.90971 -12.62055 -12.52173 -12.20966 -12.14185 -12.10219 -11.99777 -11.90254 -11.77656 -11.50877 -11.23546 -10.95441 -10.58375 -10.39408 -9.85464 -9.64075 -8.94690 -8.76080 -5.72280 -0.89285 0.08399 0.72483 0.81387 1.20043 1.27341 1.40877 1.54853 1.77210 2.18701 2.37572 2.97970 3.06288 3.78219 3.82180 3.85959 4.11623 4.18184 4.26484 4.39268 4.47183 4.52449 4.66220 4.72196 4.78867 4.83956 4.85453 4.99721 5.05194 5.09401 5.19149 5.21849 5.31890 5.37818 5.42147 5.45487 5.48623 5.54492 6.06084 6.41375 7.11856 7.40431 8.10424 8.27159 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.003725 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.546025 B = 7515.738311 C = 8301.685471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.042 3.958 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.255 1.255 6 H -0.269 1.269 7 C -0.381 4.381 8 H 0.076 0.924 9 N -0.413 5.413 10 C 0.428 3.572 11 O -0.662 6.662 12 C -0.189 4.189 13 C -0.048 4.048 14 C -0.177 4.177 15 C -0.109 4.109 16 C -0.119 4.119 17 C -0.198 4.198 18 Cl -0.010 7.010 19 S 0.232 5.768 20 C 0.100 3.900 21 C -0.136 4.136 22 C -0.112 4.112 23 C -0.116 4.116 24 C -0.154 4.154 25 H 0.289 0.711 26 H 0.157 0.843 27 H 0.126 0.874 28 H 0.170 0.830 29 H 0.172 0.828 30 H 0.123 0.877 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -10.643 -14.846 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.170 4.170 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.179 1.179 6 H -0.194 1.194 7 C -0.508 4.508 8 H 0.094 0.906 9 N -0.126 5.126 10 C 0.225 3.775 11 O -0.556 6.556 12 C -0.212 4.212 13 C -0.071 4.071 14 C -0.295 4.295 15 C -0.140 4.140 16 C -0.151 4.151 17 C -0.343 4.343 18 Cl 0.019 6.981 19 S 0.499 5.501 20 C -0.004 4.004 21 C -0.174 4.174 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.192 4.192 25 H 0.100 0.900 26 H 0.174 0.826 27 H 0.144 0.856 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.140 0.860 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.103 -9.465 -15.098 18.286 hybrid contribution 1.380 -0.373 1.093 1.800 sum -2.723 -9.838 -14.004 17.330 Atomic orbital electron populations 1.70243 1.07963 1.30538 1.35695 1.25837 0.94911 1.01983 0.94255 0.85603 0.79784 0.78025 0.79267 1.20301 1.17910 1.19402 1.19447 1.19095 0.93972 1.18238 0.90648 1.44061 1.24588 1.14497 1.29408 1.17012 0.87145 0.83839 0.89525 1.90594 1.41616 1.77920 1.45519 1.22817 1.03040 0.95210 1.00145 1.20419 0.98369 0.92046 0.96288 1.22657 1.06354 0.99918 1.00533 1.21024 1.01564 0.92140 0.99234 1.20194 0.98389 1.02914 0.93601 1.25028 1.08890 1.02715 0.97687 1.98360 1.85087 1.85313 1.29349 1.83199 1.42648 1.10830 1.13443 1.22929 0.86635 1.02623 0.88238 1.23102 0.98135 0.97111 0.99056 1.22290 0.97543 1.02894 0.92297 1.22150 0.94895 1.00356 0.97932 1.22974 0.99844 1.01583 0.94811 0.90041 0.82569 0.85630 0.81230 0.81097 0.85976 0.92902 0.92154 0.90452 0.89351 0.90904 0.88963 0.91657 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.90 11.25 21.68 0.24 -39.66 16 2 C 0.04 2.10 4.61 84.95 0.39 2.49 16 3 Si 0.95 39.56 29.69 68.60 2.04 41.60 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.38 -21.89 9.31 84.11 0.78 -21.11 16 8 H 0.08 4.82 7.40 -2.91 -0.02 4.79 16 9 N -0.41 -21.75 2.66 -617.26 -1.64 -23.39 16 10 C 0.43 22.61 6.74 84.97 0.57 23.18 16 11 O -0.66 -40.55 15.74 -4.86 -0.08 -40.63 16 12 C -0.19 -7.77 5.54 22.45 0.12 -7.64 16 13 C -0.05 -1.73 9.36 22.49 0.21 -1.52 16 14 C -0.18 -5.00 6.20 22.79 0.14 -4.86 16 15 C -0.11 -2.48 10.25 21.81 0.22 -2.26 16 16 C -0.12 -2.34 10.08 21.11 0.21 -2.13 16 17 C -0.20 -4.22 6.82 66.87 0.46 -3.76 16 18 Cl -0.01 -0.18 29.27 -2.72 -0.08 -0.26 16 19 S 0.23 5.54 20.58 -56.49 -1.16 4.38 16 20 C 0.10 4.28 2.90 46.19 0.13 4.42 16 21 C -0.14 -5.08 5.97 32.00 0.19 -4.89 16 22 C -0.11 -3.01 6.82 31.67 0.22 -2.79 16 23 C -0.12 -2.95 6.19 31.32 0.19 -2.75 16 24 C -0.15 -5.34 5.64 31.32 0.18 -5.16 16 25 H 0.29 12.68 8.31 -92.71 -0.77 11.91 16 26 H 0.16 5.51 2.00 -2.91 -0.01 5.50 16 27 H 0.13 4.90 7.48 -2.91 -0.02 4.88 16 28 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 29 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.12 5.68 4.72 -2.39 -0.01 5.67 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.33 5.36 -2.39 -0.01 2.32 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.66 6.52 -2.38 -0.02 1.64 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 2.40 5.14 -2.39 -0.01 2.38 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -67.10 330.70 4.45 -62.65 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 1.11 Total: 24.08 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 4.03 Total: -28.77 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -1.40 Total: -63.05 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.08 Total: -40.63 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.04 Total: 41.60 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -1.16 Total: 4.38 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -67.10 4.45 -62.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172454351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.703 kcal (2) G-P(sol) polarization free energy of solvation -67.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds