Wall clock time and date at job start Sat Apr 11 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35925 * 117.00337 * 2 1 4 4 C 1.38709 * 120.05898 * 0.02562 * 3 2 1 5 5 C 1.38153 * 119.95760 * 179.72380 * 4 3 2 6 6 C 1.38267 * 120.07488 * 0.51125 * 5 4 3 7 7 C 1.50706 * 119.94108 * 179.76630 * 6 5 4 8 8 S 1.81398 * 109.47148 * 269.72676 * 7 6 5 9 9 C 1.81394 * 103.00193 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47043 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47317 * 304.99349 * 10 9 8 12 12 C 1.47199 * 109.47370 * 65.00229 * 10 9 8 13 13 N 9.40444 * 100.51029 * 333.57832 * 2 1 3 14 14 C 1.53007 * 109.46765 * 184.99810 * 10 9 8 15 15 C 1.50700 * 109.46711 * 174.99686 * 14 10 9 16 16 H 1.07994 * 120.00611 * 0.02562 * 15 14 10 17 17 C 1.37879 * 119.99718 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00287 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00153 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47113 * 89.99257 * 19 17 15 21 21 H 1.48494 * 109.47124 * 209.99771 * 19 17 15 22 22 H 1.48498 * 109.46897 * 329.99747 * 19 17 15 23 23 C 1.38250 * 120.12220 * 359.48835 * 6 5 4 24 24 C 1.38251 * 120.04015 * 0.25925 * 23 6 5 25 25 Cl 1.73596 * 120.03820 * 179.97438 * 24 23 6 26 26 H 1.09005 * 109.47057 * 300.00256 * 1 2 3 27 27 H 1.09003 * 109.46932 * 59.99825 * 1 2 3 28 28 H 1.08999 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.01706 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.95815 * 180.27663 * 5 4 3 31 31 H 1.09000 * 109.46646 * 29.71948 * 7 6 5 32 32 H 1.09000 * 109.47248 * 149.72666 * 7 6 5 33 33 H 1.08998 * 109.46917 * 299.99947 * 9 8 7 34 34 H 1.09001 * 109.47091 * 59.99712 * 9 8 7 35 35 H 1.08995 * 109.47551 * 295.00274 * 14 10 9 36 36 H 1.09000 * 109.47091 * 55.00379 * 14 10 9 37 37 H 0.96993 * 120.00860 * 180.02562 * 18 17 15 38 38 H 1.08006 * 119.97895 * 180.23051 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2919 2.3752 0.0005 5 6 1.9214 3.6050 0.0063 6 6 3.3022 3.6767 0.0009 7 6 3.9856 5.0198 0.0019 8 16 4.2602 5.5599 -1.7080 9 6 5.0768 7.1665 -1.5024 10 6 5.3811 7.7636 -2.8778 11 1 5.9638 7.0516 -3.4623 12 6 4.1186 8.0551 -3.5764 13 7 3.1444 8.2808 -4.1145 14 6 6.1798 9.0574 -2.7067 15 6 6.5849 9.5803 -4.0607 16 1 6.3009 9.0439 -4.9540 17 6 7.3174 10.7443 -4.1593 18 7 7.6706 11.2010 -5.3409 19 14 7.8082 11.6727 -2.6143 20 1 9.1243 11.1779 -2.1365 21 1 7.9051 13.1230 -2.9181 22 1 6.7852 11.4550 -1.5601 23 6 4.0570 2.5185 0.0003 24 6 3.4323 1.2852 -0.0002 25 17 4.3802 -0.1692 -0.0016 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2133 2.3202 0.0005 30 1 1.3341 4.5114 0.0112 31 1 3.3570 5.7469 0.5160 32 1 4.9435 4.9397 0.5158 33 1 4.4206 7.8396 -0.9507 34 1 6.0074 7.0331 -0.9507 35 1 5.5640 9.8002 -2.1997 36 1 7.0716 8.8580 -2.1126 37 1 8.1863 12.0196 -5.4102 38 1 5.1355 2.5772 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190704979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:31 Heat of formation + Delta-G solvation = -6.170645 kcal Electronic energy + Delta-G solvation = -20955.747421 eV Core-core repulsion = 17529.443865 eV Total energy + Delta-G solvation = -3426.303556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60378 -38.16531 -36.84140 -36.68785 -34.02858 -32.44129 -32.28279 -31.29169 -28.53833 -28.26991 -26.49473 -24.06080 -23.14089 -21.80015 -21.53334 -18.67179 -17.16770 -17.02033 -16.89881 -16.31389 -16.24397 -15.84715 -14.87441 -14.83978 -14.51669 -14.36124 -14.13642 -13.82246 -13.58684 -13.29743 -13.00316 -12.64338 -12.50294 -12.46662 -12.17429 -12.11034 -11.86504 -11.55306 -11.48941 -11.37151 -11.31213 -11.09587 -10.97653 -10.49970 -10.19074 -9.89025 -9.76825 -9.39723 -9.24484 -8.66199 -8.43627 -7.64806 -6.14669 -4.16219 0.67291 0.79056 1.76412 1.90000 2.54905 2.77044 3.22278 3.30327 3.30800 3.31674 3.52690 3.61658 4.27238 4.30813 4.33846 4.48437 4.58503 4.70303 4.71894 4.78025 4.86320 5.05889 5.11547 5.12494 5.19364 5.27853 5.31941 5.40415 5.60168 5.71978 5.77458 6.05202 6.08594 6.16915 6.20222 6.81955 6.83157 7.02812 7.56401 8.32955 8.38860 8.88532 9.44173 10.98296 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002225 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.491484 B =12579.081841 C =13018.643122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.139 3.861 4 C -0.197 4.197 5 C -0.055 4.055 6 C -0.094 4.094 7 C -0.047 4.047 8 S -0.251 6.251 9 C -0.081 4.081 10 C 0.034 3.966 11 H 0.116 0.884 12 C 0.238 3.762 13 N -0.455 5.455 14 C 0.000 4.000 15 C -0.530 4.530 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.877 3.123 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.053 4.053 24 C -0.069 4.069 25 Cl -0.056 7.056 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.027 0.973 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.794 -21.549 17.478 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.091 3.909 4 C -0.216 4.216 5 C -0.075 4.075 6 C -0.096 4.096 7 C -0.194 4.194 8 S -0.020 6.020 9 C -0.230 4.230 10 C 0.012 3.988 11 H 0.134 0.866 12 C -0.079 4.079 13 N -0.131 5.131 14 C -0.040 4.040 15 C -0.568 4.568 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.074 4.074 24 C -0.096 4.096 25 Cl -0.028 7.028 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.263 -21.884 15.621 29.552 hybrid contribution 0.874 1.226 1.912 2.434 sum -11.389 -20.659 17.534 29.393 Atomic orbital electron populations 1.23135 0.77911 1.04333 1.01605 1.86159 1.21659 1.25874 1.88162 1.18713 0.90533 0.85209 0.96400 1.21179 1.00354 0.91461 1.08618 1.20965 0.93729 0.97612 0.95201 1.19061 0.93324 0.93091 1.04074 1.22209 1.03631 0.96324 0.97229 1.87418 1.79474 1.24859 1.10298 1.23638 1.03496 0.94813 1.01099 1.18699 0.87923 1.01242 0.90971 0.86636 1.28740 0.93785 0.92138 0.93260 1.80997 1.12975 1.09845 1.09327 1.19680 0.94801 0.90176 0.99353 1.20991 1.34989 1.09251 0.91577 0.90665 1.24984 0.95217 0.96901 0.95946 1.69895 1.37924 1.22328 1.23090 0.86819 0.79440 0.79421 0.83893 1.19947 1.21244 1.18893 1.20817 1.00807 0.89047 0.96694 1.20094 0.88706 0.88910 1.11882 1.98370 1.71464 1.35817 1.97107 0.92413 0.92299 0.87907 0.84382 0.84738 0.88960 0.88786 0.89496 0.88067 0.95519 0.94598 0.92471 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.81 9.96 -19.51 -0.19 -3.00 16 3 C 0.14 1.36 6.68 -39.19 -0.26 1.10 16 4 C -0.20 -1.65 9.04 -39.44 -0.36 -2.01 16 5 C -0.06 -0.49 9.69 -39.60 -0.38 -0.87 16 6 C -0.09 -0.89 5.14 -104.60 -0.54 -1.43 16 7 C -0.05 -0.42 6.07 36.01 0.22 -0.21 16 8 S -0.25 -3.24 21.12 -107.50 -2.27 -5.51 16 9 C -0.08 -1.06 5.36 37.16 0.20 -0.86 16 10 C 0.03 0.60 2.22 -93.40 -0.21 0.39 16 11 H 0.12 1.97 8.14 -51.93 -0.42 1.54 16 12 C 0.24 4.85 13.31 -20.77 -0.28 4.58 16 13 N -0.46 -10.16 18.53 42.14 0.78 -9.37 16 14 C 0.00 0.00 3.49 -27.88 -0.10 -0.10 16 15 C -0.53 -14.06 9.15 -34.44 -0.32 -14.37 16 16 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 19 Si 0.88 20.19 27.47 -169.99 -4.67 15.52 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 23 C -0.05 -0.51 9.48 -39.57 -0.38 -0.89 16 24 C -0.07 -0.71 6.33 -39.36 -0.25 -0.96 16 25 Cl -0.06 -0.58 28.50 -51.86 -1.48 -2.06 16 26 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 27 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.14 0.82 6.30 -52.48 -0.33 0.49 16 30 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.09 0.74 8.08 -51.92 -0.42 0.32 16 32 H 0.09 0.72 8.08 -51.92 -0.42 0.30 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.03 0.56 7.20 -51.93 -0.37 0.19 16 36 H 0.04 0.68 7.57 -51.93 -0.39 0.29 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -32.38 358.92 -8.24 -40.62 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.85 Total: -3.06 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.75 Total: -12.61 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 1.55 Total: -35.32 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -0.19 Total: -3.00 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.27 Total: -5.51 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.38 -8.24 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190704979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.453 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds