Wall clock time and date at job start Sat Apr 11 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35925 * 117.00337 * 2 1 4 4 C 1.38709 * 120.05898 * 0.02562 * 3 2 1 5 5 C 1.38153 * 119.95760 * 179.72380 * 4 3 2 6 6 C 1.38267 * 120.07488 * 0.51125 * 5 4 3 7 7 C 1.50706 * 119.94108 * 179.76630 * 6 5 4 8 8 S 1.81398 * 109.47148 * 269.72676 * 7 6 5 9 9 C 1.81394 * 103.00193 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47043 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47317 * 304.99349 * 10 9 8 12 12 C 1.47199 * 109.47370 * 65.00229 * 10 9 8 13 13 N 9.40444 * 100.51029 * 333.57832 * 2 1 3 14 14 C 1.53007 * 109.46765 * 184.99810 * 10 9 8 15 15 C 1.50700 * 109.46711 * 174.99686 * 14 10 9 16 16 H 1.07994 * 120.00611 * 0.02562 * 15 14 10 17 17 C 1.37879 * 119.99718 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00287 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00153 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47113 * 89.99257 * 19 17 15 21 21 H 1.48494 * 109.47124 * 209.99771 * 19 17 15 22 22 H 1.48498 * 109.46897 * 329.99747 * 19 17 15 23 23 C 1.38250 * 120.12220 * 359.48835 * 6 5 4 24 24 C 1.38251 * 120.04015 * 0.25925 * 23 6 5 25 25 Cl 1.73596 * 120.03820 * 179.97438 * 24 23 6 26 26 H 1.09005 * 109.47057 * 300.00256 * 1 2 3 27 27 H 1.09003 * 109.46932 * 59.99825 * 1 2 3 28 28 H 1.08999 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.01706 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.95815 * 180.27663 * 5 4 3 31 31 H 1.09000 * 109.46646 * 29.71948 * 7 6 5 32 32 H 1.09000 * 109.47248 * 149.72666 * 7 6 5 33 33 H 1.08998 * 109.46917 * 299.99947 * 9 8 7 34 34 H 1.09001 * 109.47091 * 59.99712 * 9 8 7 35 35 H 1.08995 * 109.47551 * 295.00274 * 14 10 9 36 36 H 1.09000 * 109.47091 * 55.00379 * 14 10 9 37 37 H 0.96993 * 120.00860 * 180.02562 * 18 17 15 38 38 H 1.08006 * 119.97895 * 180.23051 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2919 2.3752 0.0005 5 6 1.9214 3.6050 0.0063 6 6 3.3022 3.6767 0.0009 7 6 3.9856 5.0198 0.0019 8 16 4.2602 5.5599 -1.7080 9 6 5.0768 7.1665 -1.5024 10 6 5.3811 7.7636 -2.8778 11 1 5.9638 7.0516 -3.4623 12 6 4.1186 8.0551 -3.5764 13 7 3.1444 8.2808 -4.1145 14 6 6.1798 9.0574 -2.7067 15 6 6.5849 9.5803 -4.0607 16 1 6.3009 9.0439 -4.9540 17 6 7.3174 10.7443 -4.1593 18 7 7.6706 11.2010 -5.3409 19 14 7.8082 11.6727 -2.6143 20 1 9.1243 11.1779 -2.1365 21 1 7.9051 13.1230 -2.9181 22 1 6.7852 11.4550 -1.5601 23 6 4.0570 2.5185 0.0003 24 6 3.4323 1.2852 -0.0002 25 17 4.3802 -0.1692 -0.0016 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2133 2.3202 0.0005 30 1 1.3341 4.5114 0.0112 31 1 3.3570 5.7469 0.5160 32 1 4.9435 4.9397 0.5158 33 1 4.4206 7.8396 -0.9507 34 1 6.0074 7.0331 -0.9507 35 1 5.5640 9.8002 -2.1997 36 1 7.0716 8.8580 -2.1126 37 1 8.1863 12.0196 -5.4102 38 1 5.1355 2.5772 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190704979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:31 Heat of formation + Delta-G solvation = -23.919612 kcal Electronic energy + Delta-G solvation = -20956.517074 eV Core-core repulsion = 17529.443865 eV Total energy + Delta-G solvation = -3427.073209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23427 -38.79544 -38.39693 -37.42859 -35.72649 -34.17916 -33.10222 -31.94609 -30.06266 -28.89654 -27.16081 -25.49596 -23.79358 -23.34241 -22.42021 -19.29290 -18.97518 -18.50764 -17.57935 -17.31740 -16.81199 -16.67981 -16.38468 -15.51273 -15.49489 -15.42414 -15.02197 -14.94494 -14.67722 -14.39314 -14.25041 -14.00536 -13.82198 -13.51662 -13.18081 -13.08676 -12.98927 -12.76772 -12.56429 -12.50273 -12.15162 -12.09409 -12.07373 -11.83415 -11.68291 -11.46590 -11.35181 -10.83966 -10.72476 -9.92756 -9.12466 -8.59948 -8.23957 -6.30569 -0.06339 0.11834 0.92435 1.17174 1.44348 1.47455 1.57443 1.68165 1.94388 2.00243 2.23356 2.42132 2.63312 3.10400 3.18483 3.60325 3.71519 3.88351 3.92874 4.09931 4.22024 4.23556 4.36735 4.38773 4.49858 4.52562 4.64616 4.68874 4.73915 4.77704 4.83669 4.94900 5.13268 5.20470 5.41215 5.41789 5.57117 5.63395 6.24035 6.24924 6.74210 6.80035 7.33853 8.93068 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002225 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.491484 B =12579.081841 C =13018.643122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.130 3.870 4 C -0.198 4.198 5 C -0.058 4.058 6 C -0.104 4.104 7 C -0.028 4.028 8 S -0.304 6.304 9 C -0.067 4.067 10 C 0.038 3.962 11 H 0.116 0.884 12 C 0.249 3.751 13 N -0.499 5.499 14 C 0.002 3.998 15 C -0.534 4.534 16 H 0.026 0.974 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.951 3.049 20 H -0.256 1.256 21 H -0.297 1.297 22 H -0.233 1.233 23 C -0.057 4.057 24 C -0.089 4.089 25 Cl -0.065 7.065 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.161 0.839 30 H 0.149 0.851 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.265 0.735 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 -21.811 20.961 32.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.083 3.917 4 C -0.216 4.216 5 C -0.078 4.078 6 C -0.106 4.106 7 C -0.175 4.175 8 S -0.074 6.074 9 C -0.216 4.216 10 C 0.015 3.985 11 H 0.134 0.866 12 C -0.068 4.068 13 N -0.176 5.176 14 C -0.038 4.038 15 C -0.572 4.572 16 H 0.044 0.956 17 C -0.195 4.195 18 N -0.595 5.595 19 Si 0.774 3.226 20 H -0.181 1.181 21 H -0.224 1.224 22 H -0.155 1.155 23 C -0.077 4.077 24 C -0.116 4.116 25 Cl -0.036 7.036 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.179 0.821 30 H 0.167 0.833 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.151 0.849 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.648 -22.174 19.120 31.894 hybrid contribution 0.889 1.170 0.745 1.647 sum -11.759 -21.004 19.864 31.210 Atomic orbital electron populations 1.23417 0.75975 1.05837 1.02577 1.86138 1.23755 1.25874 1.88050 1.18920 0.90611 0.85940 0.96247 1.21447 1.01525 0.90843 1.07802 1.21236 0.93784 0.98346 0.94428 1.19171 0.93703 0.93142 1.04597 1.22242 1.05051 0.96167 0.94032 1.87663 1.79854 1.25135 1.14712 1.23486 1.05452 0.94637 0.98027 1.18752 0.86031 1.00129 0.93571 0.86637 1.29451 0.94006 0.90970 0.92385 1.80987 1.14707 1.11187 1.10743 1.19627 0.96500 0.91575 0.96095 1.21379 1.34042 1.08769 0.93021 0.95553 1.26085 0.95432 0.98269 0.99751 1.70092 1.39870 1.23259 1.26297 0.85652 0.80485 0.76819 0.79688 1.18081 1.22365 1.15542 1.20957 1.01337 0.88987 0.96438 1.20318 0.89234 0.88944 1.13154 1.98358 1.71685 1.36367 1.97220 0.91020 0.91645 0.86303 0.82111 0.83302 0.87263 0.86809 0.88180 0.84852 0.94840 0.91316 0.92637 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.32 -5.63 9.96 -92.71 -0.92 -6.56 16 3 C 0.13 2.40 6.68 22.52 0.15 2.55 16 4 C -0.20 -2.91 9.04 22.36 0.20 -2.71 16 5 C -0.06 -0.89 9.69 22.26 0.22 -0.67 16 6 C -0.10 -1.73 5.14 -19.85 -0.10 -1.84 16 7 C -0.03 -0.42 6.07 71.24 0.43 0.01 16 8 S -0.30 -7.13 21.12 -56.49 -1.19 -8.32 16 9 C -0.07 -1.51 5.36 71.98 0.39 -1.12 16 10 C 0.04 1.24 2.22 -12.60 -0.03 1.22 16 11 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 12 C 0.25 10.04 13.31 89.45 1.19 11.23 16 13 N -0.50 -22.49 18.53 20.00 0.37 -22.12 16 14 C 0.00 0.08 3.49 29.85 0.10 0.18 16 15 C -0.53 -28.52 9.15 25.60 0.23 -28.28 16 16 H 0.03 1.61 7.84 -2.91 -0.02 1.59 16 17 C 0.00 0.07 5.47 84.66 0.46 0.53 16 18 N -0.95 -58.85 13.96 21.45 0.30 -58.55 16 19 Si 0.95 40.39 27.47 68.60 1.88 42.27 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 21 H -0.30 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.23 -8.63 6.54 99.48 0.65 -7.98 16 23 C -0.06 -1.01 9.48 22.28 0.21 -0.80 16 24 C -0.09 -1.78 6.33 22.41 0.14 -1.64 16 25 Cl -0.07 -1.32 28.50 -2.72 -0.08 -1.40 16 26 H 0.07 0.40 7.66 -2.38 -0.02 0.38 16 27 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 28 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.16 1.49 6.30 -2.91 -0.02 1.48 16 30 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 31 H 0.11 1.29 8.08 -2.39 -0.02 1.27 16 32 H 0.11 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 36 H 0.07 2.29 7.57 -2.39 -0.02 2.27 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -73.55 358.92 6.09 -67.46 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.02 Total: 7.30 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 4.71 Total: -20.09 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: 0.67 Total: -80.67 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.92 Total: -6.56 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.88 Total: 42.27 kcal Atomic # 16 Polarization: -7.13 SS G_CDS: -1.19 Total: -8.32 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -73.55 6.09 -67.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190704979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.537 kcal (2) G-P(sol) polarization free energy of solvation -73.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds