Wall clock time and date at job start Sat Apr 11 2020 01:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34895 * 126.33582 * 2 1 4 4 C 1.34538 * 107.67989 * 180.30285 * 3 2 1 5 5 C 1.47026 * 125.76316 * 179.76101 * 4 3 2 6 6 C 1.36179 * 125.33135 * 359.97338 * 5 4 3 7 7 C 1.37722 * 114.44283 * 179.97438 * 6 5 4 8 8 C 1.33719 * 115.19391 * 359.97438 * 7 6 5 9 9 S 1.75823 * 109.95860 * 359.77006 * 8 7 6 10 10 N 1.31515 * 108.47885 * 359.73587 * 4 3 2 11 11 C 1.34213 * 108.61519 * 0.02562 * 10 4 3 12 12 C 1.50706 * 126.05188 * 179.97438 * 11 10 4 13 13 S 1.81406 * 109.47019 * 90.02372 * 12 11 10 14 14 O 1.42100 * 109.46688 * 63.60981 * 13 12 11 15 15 C 1.81396 * 102.99751 * 179.97438 * 13 12 11 16 16 C 1.53005 * 109.47050 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47115 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00287 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99682 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00474 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99903 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47314 * 59.99649 * 21 19 17 23 23 H 1.48497 * 109.47073 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47032 * 300.00022 * 21 19 17 25 25 H 1.09005 * 109.46883 * 270.14007 * 1 2 3 26 26 H 1.08998 * 109.47258 * 30.14119 * 1 2 3 27 27 H 1.09002 * 109.47182 * 150.14267 * 1 2 3 28 28 H 1.08004 * 122.77774 * 359.97438 * 6 5 4 29 29 H 1.08005 * 122.40262 * 180.02562 * 7 6 5 30 30 H 1.07999 * 125.01584 * 179.97438 * 8 7 6 31 31 H 1.08994 * 109.46790 * 210.02061 * 12 11 10 32 32 H 1.08997 * 109.47305 * 330.02501 * 12 11 10 33 33 H 1.08993 * 109.47440 * 300.00327 * 15 13 12 34 34 H 1.09005 * 109.46936 * 60.00294 * 15 13 12 35 35 H 1.08996 * 109.47228 * 300.01023 * 16 15 13 36 36 H 1.09005 * 109.46749 * 60.00500 * 16 15 13 37 37 H 0.96998 * 120.00308 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3063 1.0867 0.0000 4 6 3.5809 0.6563 -0.0068 5 6 4.7767 1.5118 -0.0142 6 6 4.7707 2.8736 -0.0158 7 6 6.0220 3.4489 -0.0226 8 6 7.0446 2.5874 -0.0260 9 16 6.4389 0.9368 -0.0138 10 7 3.5769 -0.6588 -0.0051 11 6 2.3037 -1.0833 0.0021 12 6 1.8477 -2.5198 0.0058 13 16 1.6733 -3.0945 1.7175 14 8 0.6548 -2.3460 2.3669 15 6 1.1262 -4.8123 1.5174 16 6 0.9311 -5.4492 2.8949 17 6 0.4771 -6.8765 2.7286 18 1 0.3417 -7.2884 1.7395 19 6 0.2347 -7.6565 3.8394 20 7 0.3991 -7.1549 5.0439 21 14 -0.3274 -9.4261 3.6334 22 1 0.7000 -10.1870 2.8778 23 1 -0.5168 -10.0441 4.9703 24 1 -1.6115 -9.4540 2.8881 25 1 -0.3633 0.0025 1.0277 26 1 -0.3634 0.8887 -0.5160 27 1 -0.3634 -0.8913 -0.5116 28 1 3.8601 3.4543 -0.0120 29 1 6.1669 4.5192 -0.0241 30 1 8.0884 2.8645 -0.0317 31 1 0.8869 -2.5972 -0.5031 32 1 2.5834 -3.1358 -0.5112 33 1 0.1834 -4.8321 0.9708 34 1 1.8797 -5.3713 0.9625 35 1 1.8741 -5.4294 3.4412 36 1 0.1777 -4.8903 3.4501 37 1 0.2288 -7.7038 5.8253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190759994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:32 Heat of formation + Delta-G solvation = -15.488009 kcal Electronic energy + Delta-G solvation = -21488.150212 eV Core-core repulsion = 18063.486331 eV Total energy + Delta-G solvation = -3424.663881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.45511 -38.66340 -36.77806 -36.41274 -35.72454 -34.39915 -32.87343 -31.10110 -30.36460 -27.42566 -26.93850 -25.01003 -23.44468 -23.04041 -22.20472 -20.06597 -19.04095 -18.78741 -18.41463 -17.94126 -17.37358 -16.58479 -16.45434 -16.15204 -15.90764 -15.63808 -15.24586 -14.85753 -14.48048 -14.32649 -14.20218 -13.99602 -13.85985 -13.64305 -13.44348 -13.39917 -13.20588 -12.97471 -12.83198 -12.63132 -12.48540 -11.98251 -11.90596 -11.82922 -11.69230 -11.52817 -11.07543 -10.58901 -10.40017 -9.51570 -9.28729 -8.94676 -8.20860 -6.34374 -0.66966 0.21424 0.28239 0.74784 0.99940 1.40082 1.43523 1.47462 1.51710 1.61669 1.79066 1.94430 2.40492 2.59768 2.91308 3.11196 3.50587 3.60551 3.98209 4.16686 4.18933 4.30002 4.34405 4.43399 4.47626 4.49496 4.55874 4.66633 4.79693 4.89156 5.01157 5.02899 5.11824 5.27415 5.40276 5.42543 5.51086 5.76996 6.17300 6.43612 6.80504 7.34992 8.90004 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.002402 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.996781 B =11655.035001 C =12351.375640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.043 4.043 3 O -0.196 6.196 4 C 0.252 3.748 5 C -0.179 4.179 6 C -0.086 4.086 7 C -0.146 4.146 8 C -0.191 4.191 9 S 0.197 5.803 10 N -0.475 5.475 11 C 0.000 4.000 12 C -0.359 4.359 13 S 1.264 4.736 14 O -0.900 6.900 15 C -0.414 4.414 16 C 0.037 3.963 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.259 1.259 23 H -0.284 1.284 24 H -0.271 1.271 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.153 0.847 29 H 0.178 0.822 30 H 0.206 0.794 31 H 0.111 0.889 32 H 0.163 0.837 33 H 0.069 0.931 34 H 0.139 0.861 35 H 0.020 0.980 36 H -0.023 1.023 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.200 21.353 -14.956 29.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 O -0.084 6.084 4 C 0.048 3.952 5 C -0.297 4.297 6 C -0.122 4.122 7 C -0.175 4.175 8 C -0.328 4.328 9 S 0.463 5.537 10 N -0.205 5.205 11 C -0.121 4.121 12 C -0.496 4.496 13 S 1.466 4.534 14 O -0.895 6.895 15 C -0.553 4.553 16 C -0.002 4.002 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.183 1.183 23 H -0.209 1.209 24 H -0.196 1.196 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.171 0.829 29 H 0.195 0.805 30 H 0.223 0.777 31 H 0.130 0.870 32 H 0.181 0.819 33 H 0.087 0.913 34 H 0.157 0.843 35 H 0.038 0.962 36 H -0.004 1.004 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.563 20.033 -13.935 28.944 hybrid contribution -3.907 0.669 -0.691 4.024 sum 11.657 20.702 -14.627 27.900 Atomic orbital electron populations 1.20444 0.82264 1.05644 1.04312 1.23763 0.95876 0.83756 1.06444 1.84471 1.17187 1.36115 1.70644 1.22765 0.82587 0.88352 1.01508 1.21627 0.93306 0.95468 1.19265 1.20997 1.01114 0.91279 0.98792 1.20269 0.89896 1.03036 1.04296 1.26566 1.05404 0.94735 1.06056 1.84570 0.92517 1.07362 1.69276 1.70636 1.22204 1.08387 1.19281 1.20617 0.88275 0.95743 1.07486 1.26030 1.07804 0.95001 1.20718 1.70384 1.13104 0.84267 0.85608 1.92972 1.63851 1.67252 1.65446 1.27505 1.07995 1.15689 1.04102 1.18635 0.95956 0.94995 0.90584 1.21621 1.45698 0.97489 0.93191 0.91484 1.26067 0.95530 1.03701 0.94871 1.70096 1.50068 1.38668 0.98551 0.85442 0.79142 0.78687 0.77424 1.18305 1.20910 1.19639 0.90157 0.87778 0.88271 0.82905 0.80503 0.77711 0.87013 0.81884 0.91252 0.84256 0.96179 1.00415 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.21 71.24 0.73 -0.94 16 2 C -0.04 -1.25 7.38 24.82 0.18 -1.07 16 3 O -0.20 -5.67 10.79 -10.68 -0.12 -5.79 16 4 C 0.25 7.12 8.09 87.05 0.70 7.82 16 5 C -0.18 -3.91 6.46 24.10 0.16 -3.75 16 6 C -0.09 -1.41 10.15 21.67 0.22 -1.19 16 7 C -0.15 -1.54 10.15 21.12 0.21 -1.33 16 8 C -0.19 -1.87 11.21 66.79 0.75 -1.12 16 9 S 0.20 3.30 23.30 -56.49 -1.32 1.98 16 10 N -0.48 -14.30 11.33 -293.48 -3.33 -17.62 16 11 C 0.00 0.01 6.35 41.34 0.26 0.27 16 12 C -0.36 -9.36 6.26 71.24 0.45 -8.91 16 13 S 1.26 42.64 13.14 -56.49 -0.74 41.90 16 14 O -0.90 -40.85 18.14 -148.98 -2.70 -43.55 16 15 C -0.41 -16.09 5.86 71.98 0.42 -15.66 16 16 C 0.04 1.95 4.98 29.85 0.15 2.10 16 17 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 18 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 21 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.10 2.12 7.14 -2.39 -0.02 2.11 16 28 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.21 0.58 8.06 -2.91 -0.02 0.55 16 31 H 0.11 2.65 7.14 -2.39 -0.02 2.64 16 32 H 0.16 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -81.72 354.01 0.12 -81.59 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.09 Total: 6.74 kcal Atomic # 6 Polarization: -59.02 SS G_CDS: 4.93 Total: -54.09 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -3.04 Total: -75.04 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -2.82 Total: -49.34 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 45.94 SS G_CDS: -2.06 Total: 43.88 kcal Total: -81.72 0.12 -81.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190759994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.106 kcal (2) G-P(sol) polarization free energy of solvation -81.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds