Wall clock time and date at job start Sat Apr 11 2020 01:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46896 * 2 1 4 4 C 1.50704 * 109.47345 * 120.00314 * 2 1 3 5 5 H 1.07997 * 119.99819 * 119.99787 * 4 2 1 6 6 C 1.37871 * 119.99846 * 299.99987 * 4 2 1 7 7 N 1.31518 * 120.00169 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46906 * 89.99818 * 8 6 4 10 10 H 1.48499 * 109.47144 * 209.99883 * 8 6 4 11 11 H 1.48496 * 109.47146 * 329.99988 * 8 6 4 12 12 N 1.46502 * 109.46852 * 240.00181 * 2 1 3 13 13 C 1.34775 * 120.00059 * 84.99976 * 12 2 1 14 14 O 1.21780 * 119.99798 * 359.97438 * 13 12 2 15 15 C 1.46127 * 120.00137 * 180.02562 * 13 12 2 16 16 C 1.35556 * 124.98276 * 180.02562 * 15 13 12 17 17 C 1.39327 * 115.25849 * 180.02562 * 16 15 13 18 18 S 1.77499 * 138.02238 * 180.02562 * 17 16 15 19 19 C 1.75640 * 90.24582 * 179.97438 * 18 17 16 20 20 N 1.37998 * 125.04001 * 179.97438 * 19 18 17 21 21 C 1.46499 * 120.00526 * 179.97438 * 20 19 18 22 22 C 1.46510 * 119.99563 * 359.97438 * 20 19 18 23 23 N 1.28930 * 109.92694 * 0.24099 * 19 18 17 24 24 C 1.34302 * 118.08449 * 359.54540 * 23 19 18 25 25 S 1.75336 * 124.98318 * 0.02562 * 15 13 12 26 26 H 1.09003 * 109.46985 * 299.99416 * 1 2 3 27 27 H 1.08993 * 109.47033 * 59.99718 * 1 2 3 28 28 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00370 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00354 * 264.99665 * 12 2 1 31 31 H 1.07994 * 122.37201 * 0.03506 * 16 15 13 32 32 H 1.09002 * 109.47391 * 179.97438 * 21 20 19 33 33 H 1.09001 * 109.46813 * 59.99893 * 21 20 19 34 34 H 1.09004 * 109.47041 * 300.00020 * 21 20 19 35 35 H 1.08999 * 109.47096 * 269.99916 * 22 20 19 36 36 H 1.09001 * 109.46763 * 30.00310 * 22 20 19 37 37 H 1.09005 * 109.46576 * 150.00293 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4122 10 1 1.3433 -0.9494 5.1120 11 1 2.4860 -2.5664 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8570 1.1633 -2.4119 15 6 2.6335 -0.7072 -3.5505 16 6 2.8017 -0.1313 -4.7661 17 6 3.2775 -0.9786 -5.7646 18 16 3.7002 -0.8826 -7.4858 19 6 4.1347 -2.5844 -7.4817 20 7 4.5981 -3.2864 -8.5757 21 6 4.9292 -4.7077 -8.4475 22 6 4.7590 -2.6102 -9.8654 23 7 3.9513 -3.0820 -6.3066 24 6 3.4972 -2.2683 -5.3393 25 16 3.0853 -2.3999 -3.6200 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7088 1.1611 3.4845 30 1 2.2491 -1.6317 -1.1528 31 1 2.5825 0.9104 -4.9477 32 1 5.2753 -5.0883 -9.4085 33 1 4.0430 -5.2606 -8.1360 34 1 5.7154 -4.8319 -7.7027 35 1 3.8334 -2.6901 -10.4355 36 1 4.9930 -1.5589 -9.6977 37 1 5.5703 -3.0788 -10.4226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194636733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:38 Heat of formation + Delta-G solvation = 39.963089 kcal Electronic energy + Delta-G solvation = -21681.903663 eV Core-core repulsion = 18291.937074 eV Total energy + Delta-G solvation = -3389.966590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91264 -38.93445 -37.47840 -35.11135 -34.50209 -32.42074 -29.65673 -28.83895 -28.25397 -26.45857 -25.25271 -24.07609 -22.78957 -21.29829 -20.04221 -19.18560 -18.95738 -17.34115 -16.45885 -16.13472 -16.06089 -15.81275 -15.16881 -15.12191 -14.61866 -14.32775 -13.97229 -13.72201 -13.56631 -13.19669 -13.15606 -12.98744 -12.50115 -12.43393 -11.95713 -11.64318 -11.62711 -11.07844 -10.97654 -10.88457 -10.75221 -10.31571 -10.22989 -9.88916 -9.81653 -9.65222 -9.32454 -9.06048 -8.55896 -8.04797 -8.00762 -7.70371 -6.12052 -4.21450 0.13881 0.68595 0.94345 1.51667 1.85997 2.00844 2.47880 2.56354 3.26239 3.32685 3.34860 3.77539 3.97665 4.27205 4.37919 4.61834 4.73687 4.76907 4.97352 5.06224 5.15366 5.20331 5.29844 5.39786 5.56422 5.97372 6.02009 6.15701 6.54099 6.82865 6.95799 7.13564 7.38151 7.45212 7.52683 7.68111 7.89770 8.13467 8.57130 8.74462 8.99786 9.45553 10.93995 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.029518 B = 0.002611 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.332364 B =10721.428272 C =11430.299285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.700 5.700 13 C 0.577 3.423 14 O -0.539 6.539 15 C -0.233 4.233 16 C -0.010 4.010 17 C -0.236 4.236 18 S 0.089 5.911 19 C 0.369 3.631 20 N -0.585 5.585 21 C 0.104 3.896 22 C 0.091 3.909 23 N -0.519 5.519 24 C 0.048 3.952 25 S 0.234 5.766 26 H 0.092 0.908 27 H 0.016 0.984 28 H 0.028 0.972 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.155 0.845 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -9.424 -24.933 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.347 5.347 13 C 0.360 3.640 14 O -0.419 6.419 15 C -0.357 4.357 16 C -0.045 4.045 17 C -0.365 4.365 18 S 0.336 5.664 19 C -0.008 4.008 20 N -0.305 5.305 21 C -0.040 4.040 22 C -0.052 4.052 23 N -0.245 5.245 24 C -0.195 4.195 25 S 0.495 5.505 26 H 0.111 0.889 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.172 0.828 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.441 -9.464 -24.520 27.316 hybrid contribution 0.277 -0.096 0.589 0.658 sum 7.719 -9.560 -23.931 26.901 Atomic orbital electron populations 1.22092 0.98156 0.99323 1.01099 1.18842 0.91238 0.94069 0.79519 0.92964 1.21198 1.32574 1.13331 0.90215 0.91973 1.24879 0.94747 0.94969 0.99051 1.69902 1.35724 1.22452 1.23937 0.86428 0.78599 0.79886 0.82087 1.20527 1.21053 1.19781 1.46491 1.64581 1.13249 1.10353 1.16767 0.78812 0.86462 0.81916 1.90816 1.51695 1.14874 1.84537 1.24311 1.14122 0.97942 0.99286 1.19466 0.96161 1.00415 0.88488 1.23140 1.17520 0.97730 0.98126 1.84667 1.69040 1.07899 1.04843 1.23690 0.96063 0.91704 0.89367 1.45657 1.68689 1.10024 1.06105 1.21704 1.01432 0.78534 1.02342 1.21898 1.02514 0.97865 0.82880 1.65444 1.25319 1.35561 0.98199 1.23684 1.05218 0.90652 0.99920 1.84197 1.63382 1.05976 0.96960 0.88930 0.96470 0.95315 0.92528 0.78098 0.82792 0.90312 0.91824 0.91831 0.91864 0.91051 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -15.32 5.06 -56.40 -0.29 -15.60 16 13 C 0.58 12.33 7.73 -13.10 -0.10 12.23 16 14 O -0.54 -13.31 16.43 5.12 0.08 -13.22 16 15 C -0.23 -4.08 6.35 -37.38 -0.24 -4.32 16 16 C -0.01 -0.17 9.88 -40.13 -0.40 -0.56 16 17 C -0.24 -3.45 6.95 -39.42 -0.27 -3.73 16 18 S 0.09 0.99 21.97 -107.50 -2.36 -1.37 16 19 C 0.37 4.25 7.88 -88.89 -0.70 3.55 16 20 N -0.58 -4.68 3.36 -190.78 -0.64 -5.32 16 21 C 0.10 0.65 10.43 59.85 0.62 1.27 16 22 C 0.09 0.39 10.39 59.85 0.62 1.02 16 23 N -0.52 -7.32 10.11 -11.80 -0.12 -7.44 16 24 C 0.05 0.72 8.05 -16.71 -0.13 0.58 16 25 S 0.23 3.48 22.31 -107.50 -2.40 1.08 16 26 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.39 7.49 7.59 -40.82 -0.31 7.18 16 31 H 0.15 2.37 8.00 -52.49 -0.42 1.95 16 32 H 0.08 0.24 7.79 -51.93 -0.40 -0.17 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.32 7.06 -51.93 -0.37 -0.05 16 37 H 0.08 0.17 7.92 -51.93 -0.41 -0.24 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -32.63 343.70 -10.04 -42.66 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.27 Total: 2.15 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.83 Total: 0.43 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.42 Total: -52.64 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -4.76 Total: -0.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.63 -10.04 -42.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194636733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.628 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds