Wall clock time and date at job start Sat Apr 11 2020 01:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46896 * 2 1 4 4 C 1.50704 * 109.47345 * 120.00314 * 2 1 3 5 5 H 1.07997 * 119.99819 * 119.99787 * 4 2 1 6 6 C 1.37871 * 119.99846 * 299.99987 * 4 2 1 7 7 N 1.31518 * 120.00169 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46906 * 89.99818 * 8 6 4 10 10 H 1.48499 * 109.47144 * 209.99883 * 8 6 4 11 11 H 1.48496 * 109.47146 * 329.99988 * 8 6 4 12 12 N 1.46502 * 109.46852 * 240.00181 * 2 1 3 13 13 C 1.34775 * 120.00059 * 84.99976 * 12 2 1 14 14 O 1.21780 * 119.99798 * 359.97438 * 13 12 2 15 15 C 1.46127 * 120.00137 * 180.02562 * 13 12 2 16 16 C 1.35556 * 124.98276 * 180.02562 * 15 13 12 17 17 C 1.39327 * 115.25849 * 180.02562 * 16 15 13 18 18 S 1.77499 * 138.02238 * 180.02562 * 17 16 15 19 19 C 1.75640 * 90.24582 * 179.97438 * 18 17 16 20 20 N 1.37998 * 125.04001 * 179.97438 * 19 18 17 21 21 C 1.46499 * 120.00526 * 179.97438 * 20 19 18 22 22 C 1.46510 * 119.99563 * 359.97438 * 20 19 18 23 23 N 1.28930 * 109.92694 * 0.24099 * 19 18 17 24 24 C 1.34302 * 118.08449 * 359.54540 * 23 19 18 25 25 S 1.75336 * 124.98318 * 0.02562 * 15 13 12 26 26 H 1.09003 * 109.46985 * 299.99416 * 1 2 3 27 27 H 1.08993 * 109.47033 * 59.99718 * 1 2 3 28 28 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00370 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00354 * 264.99665 * 12 2 1 31 31 H 1.07994 * 122.37201 * 0.03506 * 16 15 13 32 32 H 1.09002 * 109.47391 * 179.97438 * 21 20 19 33 33 H 1.09001 * 109.46813 * 59.99893 * 21 20 19 34 34 H 1.09004 * 109.47041 * 300.00020 * 21 20 19 35 35 H 1.08999 * 109.47096 * 269.99916 * 22 20 19 36 36 H 1.09001 * 109.46763 * 30.00310 * 22 20 19 37 37 H 1.09005 * 109.46576 * 150.00293 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4122 10 1 1.3433 -0.9494 5.1120 11 1 2.4860 -2.5664 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8570 1.1633 -2.4119 15 6 2.6335 -0.7072 -3.5505 16 6 2.8017 -0.1313 -4.7661 17 6 3.2775 -0.9786 -5.7646 18 16 3.7002 -0.8826 -7.4858 19 6 4.1347 -2.5844 -7.4817 20 7 4.5981 -3.2864 -8.5757 21 6 4.9292 -4.7077 -8.4475 22 6 4.7590 -2.6102 -9.8654 23 7 3.9513 -3.0820 -6.3066 24 6 3.4972 -2.2683 -5.3393 25 16 3.0853 -2.3999 -3.6200 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7088 1.1611 3.4845 30 1 2.2491 -1.6317 -1.1528 31 1 2.5825 0.9104 -4.9477 32 1 5.2753 -5.0883 -9.4085 33 1 4.0430 -5.2606 -8.1360 34 1 5.7154 -4.8319 -7.7027 35 1 3.8334 -2.6901 -10.4355 36 1 4.9930 -1.5589 -9.6977 37 1 5.5703 -3.0788 -10.4226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194636733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:38 Heat of formation + Delta-G solvation = 18.544993 kcal Electronic energy + Delta-G solvation = -21682.832422 eV Core-core repulsion = 18291.937074 eV Total energy + Delta-G solvation = -3390.895348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02706 -40.51523 -38.34220 -36.83435 -35.79437 -34.39148 -31.40497 -29.60615 -29.23184 -27.49167 -27.31219 -25.10356 -24.12130 -22.60915 -21.72056 -20.60964 -20.02696 -18.74620 -17.79422 -17.55123 -17.10108 -16.84310 -16.82062 -16.12068 -16.02167 -15.94158 -15.16774 -15.03234 -14.70295 -14.50172 -14.44461 -13.75781 -13.60827 -13.52792 -13.06411 -12.98717 -12.92054 -12.83222 -12.74333 -12.64962 -12.27874 -12.13543 -12.02372 -11.14634 -11.09576 -10.88120 -10.79043 -10.63235 -10.60310 -9.89354 -9.07027 -8.66938 -8.18166 -6.35942 -0.99975 -0.31909 -0.05873 0.40034 0.65223 0.88735 1.45903 1.46500 1.50855 1.57480 1.77838 2.15471 2.28485 2.50874 3.12279 3.45265 3.78565 3.83847 4.18044 4.30233 4.38781 4.45706 4.66522 4.68647 4.76384 4.80443 4.82101 4.91077 4.93077 5.06151 5.38300 5.53057 5.54107 5.64189 5.79301 5.84765 6.06245 6.52163 6.68049 6.78118 7.22392 7.39257 8.88388 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.029518 B = 0.002611 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.332364 B =10721.428272 C =11430.299285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.260 1.260 12 N -0.698 5.698 13 C 0.580 3.420 14 O -0.583 6.583 15 C -0.273 4.273 16 C 0.009 3.991 17 C -0.273 4.273 18 S 0.142 5.858 19 C 0.369 3.631 20 N -0.573 5.573 21 C 0.098 3.902 22 C 0.079 3.921 23 N -0.550 5.550 24 C 0.057 3.943 25 S 0.257 5.743 26 H 0.072 0.928 27 H 0.014 0.986 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.399 0.601 31 H 0.153 0.847 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 -11.760 -27.459 31.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.798 3.202 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.346 5.346 13 C 0.366 3.634 14 O -0.466 6.466 15 C -0.396 4.396 16 C -0.026 4.026 17 C -0.401 4.401 18 S 0.388 5.612 19 C -0.008 4.008 20 N -0.291 5.291 21 C -0.046 4.046 22 C -0.062 4.062 23 N -0.279 5.279 24 C -0.188 4.188 25 S 0.517 5.483 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.234 0.766 31 H 0.171 0.829 32 H 0.137 0.863 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.959 -11.841 -27.136 30.933 hybrid contribution -0.076 0.552 1.017 1.160 sum 8.882 -11.290 -26.119 29.809 Atomic orbital electron populations 1.21919 0.97855 0.99692 0.99919 1.18480 0.91464 0.92125 0.81170 0.97626 1.21500 1.32879 1.13711 0.90690 0.90942 1.25792 0.94764 0.95601 1.02250 1.70045 1.36705 1.23827 1.24739 0.85319 0.77821 0.79170 0.77891 1.20295 1.20734 1.18418 1.46217 1.64924 1.13772 1.09686 1.17153 0.77621 0.85987 0.82590 1.90773 1.53607 1.16838 1.85421 1.23718 1.17874 0.99829 0.98165 1.19533 0.94216 1.00462 0.88407 1.23299 1.19057 0.97463 1.00321 1.84428 1.68305 1.06869 1.01556 1.24154 0.94531 0.92433 0.89650 1.46240 1.65939 1.10787 1.06099 1.21913 1.00877 0.77385 1.04431 1.22290 1.04633 0.97996 0.81330 1.65521 1.27617 1.35850 0.98921 1.23858 1.03793 0.91031 1.00109 1.83928 1.63404 1.03539 0.97382 0.90972 0.96685 0.93989 0.92403 0.76570 0.82918 0.86340 0.92666 0.92627 0.90308 0.91001 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.05 9.26 71.98 0.67 -6.39 16 2 C 0.27 14.58 2.56 44.25 0.11 14.69 16 3 H 0.01 0.37 7.58 -2.39 -0.02 0.35 16 4 C -0.55 -29.86 8.73 25.60 0.22 -29.63 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -52.91 11.32 21.45 0.24 -52.67 16 8 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 9 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 12 N -0.70 -31.68 5.06 -450.54 -2.28 -33.96 16 13 C 0.58 25.95 7.73 86.29 0.67 26.62 16 14 O -0.58 -30.48 16.43 -4.60 -0.08 -30.56 16 15 C -0.27 -9.82 6.35 23.70 0.15 -9.67 16 16 C 0.01 0.31 9.88 21.91 0.22 0.52 16 17 C -0.27 -7.79 6.95 22.37 0.16 -7.64 16 18 S 0.14 2.85 21.97 -56.49 -1.24 1.61 16 19 C 0.37 7.60 7.88 179.74 1.42 9.02 16 20 N -0.57 -7.16 3.36 -757.50 -2.55 -9.71 16 21 C 0.10 0.88 10.43 127.77 1.33 2.22 16 22 C 0.08 0.34 10.39 127.77 1.33 1.66 16 23 N -0.55 -14.66 10.11 -191.25 -1.93 -16.59 16 24 C 0.06 1.66 8.05 84.16 0.68 2.34 16 25 S 0.26 7.63 22.31 -56.49 -1.26 6.37 16 26 H 0.07 4.06 6.07 -2.39 -0.01 4.05 16 27 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.27 14.54 8.31 -92.71 -0.77 13.76 16 30 H 0.40 15.81 7.59 -92.71 -0.70 15.10 16 31 H 0.15 4.84 8.00 -2.91 -0.02 4.82 16 32 H 0.12 0.15 7.79 -2.39 -0.02 0.13 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.07 0.35 7.06 -2.39 -0.02 0.33 16 37 H 0.12 -0.17 7.92 -2.38 -0.02 -0.19 16 Total: -1.00 -73.16 343.70 0.74 -72.42 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.42 Total: 13.46 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 7.40 Total: 5.07 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -6.52 Total: -112.93 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.08 Total: -30.56 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 10.48 SS G_CDS: -2.50 Total: 7.98 kcal Total: -73.16 0.74 -72.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194636733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.966 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds