Wall clock time and date at job start Sat Apr 11 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50701 * 109.47212 * 240.00082 * 2 1 3 5 5 H 1.08001 * 120.00213 * 239.99467 * 4 2 1 6 6 C 1.37880 * 119.99755 * 60.00086 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47104 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46986 * 119.99876 * 8 6 4 11 11 H 1.48494 * 109.47457 * 240.00237 * 8 6 4 12 12 N 1.46506 * 109.47289 * 120.00128 * 2 1 3 13 13 C 1.34777 * 120.00033 * 275.00400 * 12 2 1 14 14 O 1.21779 * 119.99667 * 359.97438 * 13 12 2 15 15 C 1.46116 * 120.00055 * 179.97438 * 13 12 2 16 16 C 1.35556 * 124.98644 * 179.97438 * 15 13 12 17 17 C 1.39326 * 115.26225 * 180.02562 * 16 15 13 18 18 S 1.77501 * 138.02201 * 180.02562 * 17 16 15 19 19 C 1.75650 * 90.24507 * 179.97438 * 18 17 16 20 20 N 1.37990 * 125.03617 * 180.02562 * 19 18 17 21 21 C 1.46507 * 120.00129 * 180.02562 * 20 19 18 22 22 C 1.46503 * 119.99960 * 359.97438 * 20 19 18 23 23 N 1.28925 * 109.92308 * 0.02562 * 19 18 17 24 24 C 1.34302 * 118.09323 * 359.97438 * 23 19 18 25 25 S 1.75341 * 124.98399 * 359.70001 * 15 13 12 26 26 H 1.09002 * 109.47153 * 59.99916 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46952 * 299.99744 * 1 2 3 29 29 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99812 * 94.99561 * 12 2 1 31 31 H 1.07996 * 122.36933 * 359.97438 * 16 15 13 32 32 H 1.08995 * 109.46925 * 59.99338 * 21 20 19 33 33 H 1.08992 * 109.47129 * 179.97438 * 21 20 19 34 34 H 1.08995 * 109.46317 * 300.00013 * 21 20 19 35 35 H 1.09006 * 109.46821 * 90.00409 * 22 20 19 36 36 H 1.09000 * 109.47297 * 209.99918 * 22 20 19 37 37 H 1.08992 * 109.47562 * 330.00416 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5864 -4.8165 11 1 3.1473 -0.1857 -4.8160 12 7 2.0184 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8577 1.1633 2.4118 15 6 2.6336 -0.7073 3.5503 16 6 2.8018 -0.1316 4.7660 17 6 3.2788 -0.9786 5.7641 18 16 3.7012 -0.8829 7.4855 19 6 4.1368 -2.5845 7.4810 20 7 4.6004 -3.2864 8.5748 21 6 4.9325 -4.7075 8.4463 22 6 4.7617 -2.6102 9.8645 23 7 3.9591 -3.0803 6.3043 24 6 3.4998 -2.2681 5.3384 25 16 3.0791 -2.4017 3.6214 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7088 1.1613 -3.4844 30 1 2.2490 -1.6318 1.1526 31 1 2.5824 0.9101 4.9478 32 1 5.7187 -4.8309 7.7015 33 1 5.2795 -5.0879 9.4069 34 1 4.0467 -5.2607 8.1345 35 1 3.8362 -2.6901 10.4348 36 1 5.5731 -3.0787 10.4214 37 1 4.9956 -1.5590 9.6969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194636749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:40 Heat of formation + Delta-G solvation = 39.948332 kcal Electronic energy + Delta-G solvation = -21682.104754 eV Core-core repulsion = 18292.137524 eV Total energy + Delta-G solvation = -3389.967229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91289 -38.93485 -37.47912 -35.11197 -34.50261 -32.42216 -29.65800 -28.83993 -28.25491 -26.45925 -25.25400 -24.07665 -22.78963 -21.29827 -20.04273 -19.18553 -18.95730 -17.34170 -16.45877 -16.13639 -16.06197 -15.81297 -15.17189 -15.12211 -14.61820 -14.32586 -13.97232 -13.72245 -13.56413 -13.19740 -13.15591 -12.98708 -12.50205 -12.43949 -11.95764 -11.64739 -11.62735 -11.09028 -10.96477 -10.88398 -10.74873 -10.31045 -10.23515 -9.88827 -9.81692 -9.65209 -9.32519 -9.04774 -8.56738 -8.04773 -8.00743 -7.70369 -6.12348 -4.21555 0.13867 0.68606 0.94338 1.51658 1.85996 2.00831 2.47869 2.56376 3.25103 3.32845 3.35948 3.77537 3.97742 4.27182 4.37818 4.61838 4.73691 4.76923 4.97349 5.06255 5.15369 5.20195 5.29840 5.39806 5.56426 5.97363 6.02004 6.15688 6.54097 6.82799 6.95636 7.13547 7.38104 7.45238 7.52693 7.68189 7.89774 8.13380 8.57112 8.74564 8.99823 9.45483 10.93769 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.002611 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.539170 B =10721.323997 C =11429.910457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.700 5.700 13 C 0.577 3.423 14 O -0.539 6.539 15 C -0.233 4.233 16 C -0.010 4.010 17 C -0.236 4.236 18 S 0.089 5.911 19 C 0.369 3.631 20 N -0.585 5.585 21 C 0.104 3.896 22 C 0.091 3.909 23 N -0.519 5.519 24 C 0.048 3.952 25 S 0.234 5.766 26 H 0.092 0.908 27 H 0.028 0.972 28 H 0.016 0.984 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.155 0.845 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 -9.439 24.948 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.347 5.347 13 C 0.360 3.640 14 O -0.419 6.419 15 C -0.357 4.357 16 C -0.045 4.045 17 C -0.365 4.365 18 S 0.335 5.665 19 C -0.008 4.008 20 N -0.305 5.305 21 C -0.040 4.040 22 C -0.052 4.052 23 N -0.245 5.245 24 C -0.195 4.195 25 S 0.495 5.505 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.172 0.828 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.434 -9.480 24.538 27.336 hybrid contribution 0.271 -0.089 -0.596 0.661 sum 7.705 -9.569 23.942 26.910 Atomic orbital electron populations 1.22092 0.98156 0.99328 1.01101 1.18847 0.91237 0.94081 0.79538 0.92957 1.21238 1.32505 1.13305 0.90197 0.91918 1.24883 0.94772 0.94956 0.99069 1.69911 1.35824 1.22438 1.23829 0.86375 0.78617 0.79550 0.82470 1.19663 1.20853 1.20854 1.46492 1.64583 1.13252 1.10349 1.16764 0.78807 0.86465 0.81918 1.90815 1.51710 1.14857 1.84540 1.24309 1.14166 0.97905 0.99277 1.19467 0.96164 1.00430 0.88471 1.23140 1.17488 0.97750 0.98137 1.84669 1.69091 1.07887 1.04821 1.23686 0.96072 0.91728 0.89325 1.45655 1.68673 1.10036 1.06109 1.21703 1.01423 0.78540 1.02346 1.21895 1.02515 0.97866 0.82883 1.65437 1.25294 1.35629 0.98167 1.23684 1.05133 0.90678 0.99973 1.84198 1.63299 1.05807 0.97213 0.88934 0.95314 0.96465 0.92586 0.78097 0.82792 0.91836 0.90312 0.91817 0.91861 0.89685 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.83 2.56 -69.08 -0.18 6.66 16 3 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 4 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.70 -15.32 5.06 -56.41 -0.29 -15.60 16 13 C 0.58 12.33 7.73 -13.10 -0.10 12.23 16 14 O -0.54 -13.31 16.43 5.12 0.08 -13.22 16 15 C -0.23 -4.08 6.35 -37.38 -0.24 -4.32 16 16 C -0.01 -0.17 9.88 -40.14 -0.40 -0.56 16 17 C -0.24 -3.45 6.95 -39.42 -0.27 -3.73 16 18 S 0.09 0.99 21.97 -107.50 -2.36 -1.37 16 19 C 0.37 4.25 7.88 -88.90 -0.70 3.55 16 20 N -0.58 -4.68 3.36 -190.80 -0.64 -5.32 16 21 C 0.10 0.65 10.43 59.85 0.62 1.27 16 22 C 0.09 0.39 10.39 59.85 0.62 1.02 16 23 N -0.52 -7.33 10.11 -11.80 -0.12 -7.44 16 24 C 0.05 0.72 8.05 -16.71 -0.13 0.58 16 25 S 0.23 3.48 22.31 -107.50 -2.40 1.08 16 26 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 7.49 7.59 -40.82 -0.31 7.18 16 31 H 0.15 2.37 8.00 -52.49 -0.42 1.95 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.24 7.79 -51.93 -0.40 -0.17 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.17 7.92 -51.93 -0.41 -0.24 16 37 H 0.07 0.32 7.06 -51.93 -0.37 -0.05 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -32.65 343.69 -10.04 -42.69 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.27 Total: 2.12 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.83 Total: 0.44 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.42 Total: -52.63 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -4.76 Total: -0.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.65 -10.04 -42.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194636749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.634 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds