Wall clock time and date at job start Sat Apr 11 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50701 * 109.47212 * 240.00082 * 2 1 3 5 5 H 1.08001 * 120.00213 * 239.99467 * 4 2 1 6 6 C 1.37880 * 119.99755 * 60.00086 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47104 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46986 * 119.99876 * 8 6 4 11 11 H 1.48494 * 109.47457 * 240.00237 * 8 6 4 12 12 N 1.46506 * 109.47289 * 120.00128 * 2 1 3 13 13 C 1.34777 * 120.00033 * 275.00400 * 12 2 1 14 14 O 1.21779 * 119.99667 * 359.97438 * 13 12 2 15 15 C 1.46116 * 120.00055 * 179.97438 * 13 12 2 16 16 C 1.35556 * 124.98644 * 179.97438 * 15 13 12 17 17 C 1.39326 * 115.26225 * 180.02562 * 16 15 13 18 18 S 1.77501 * 138.02201 * 180.02562 * 17 16 15 19 19 C 1.75650 * 90.24507 * 179.97438 * 18 17 16 20 20 N 1.37990 * 125.03617 * 180.02562 * 19 18 17 21 21 C 1.46507 * 120.00129 * 180.02562 * 20 19 18 22 22 C 1.46503 * 119.99960 * 359.97438 * 20 19 18 23 23 N 1.28925 * 109.92308 * 0.02562 * 19 18 17 24 24 C 1.34302 * 118.09323 * 359.97438 * 23 19 18 25 25 S 1.75341 * 124.98399 * 359.70001 * 15 13 12 26 26 H 1.09002 * 109.47153 * 59.99916 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46952 * 299.99744 * 1 2 3 29 29 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99812 * 94.99561 * 12 2 1 31 31 H 1.07996 * 122.36933 * 359.97438 * 16 15 13 32 32 H 1.08995 * 109.46925 * 59.99338 * 21 20 19 33 33 H 1.08992 * 109.47129 * 179.97438 * 21 20 19 34 34 H 1.08995 * 109.46317 * 300.00013 * 21 20 19 35 35 H 1.09006 * 109.46821 * 90.00409 * 22 20 19 36 36 H 1.09000 * 109.47297 * 209.99918 * 22 20 19 37 37 H 1.08992 * 109.47562 * 330.00416 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5864 -4.8165 11 1 3.1473 -0.1857 -4.8160 12 7 2.0184 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8577 1.1633 2.4118 15 6 2.6336 -0.7073 3.5503 16 6 2.8018 -0.1316 4.7660 17 6 3.2788 -0.9786 5.7641 18 16 3.7012 -0.8829 7.4855 19 6 4.1368 -2.5845 7.4810 20 7 4.6004 -3.2864 8.5748 21 6 4.9325 -4.7075 8.4463 22 6 4.7617 -2.6102 9.8645 23 7 3.9591 -3.0803 6.3043 24 6 3.4998 -2.2681 5.3384 25 16 3.0791 -2.4017 3.6214 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7088 1.1613 -3.4844 30 1 2.2490 -1.6318 1.1526 31 1 2.5824 0.9101 4.9478 32 1 5.7187 -4.8309 7.7015 33 1 5.2795 -5.0879 9.4069 34 1 4.0467 -5.2607 8.1345 35 1 3.8362 -2.6901 10.4348 36 1 5.5731 -3.0787 10.4214 37 1 4.9956 -1.5590 9.6969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194636749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:40 Heat of formation + Delta-G solvation = 18.513926 kcal Electronic energy + Delta-G solvation = -21683.034220 eV Core-core repulsion = 18292.137524 eV Total energy + Delta-G solvation = -3390.896695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02719 -40.51544 -38.34292 -36.83522 -35.79465 -34.39280 -31.40617 -29.60697 -29.23265 -27.49238 -27.31363 -25.10409 -24.12140 -22.60903 -21.72067 -20.60968 -20.02675 -18.74755 -17.79543 -17.55322 -17.10166 -16.84353 -16.82164 -16.12098 -16.02086 -15.94008 -15.16549 -15.03315 -14.70264 -14.50220 -14.44953 -13.76276 -13.60906 -13.52766 -13.06344 -12.99917 -12.92277 -12.81635 -12.74556 -12.64560 -12.29398 -12.12653 -12.02404 -11.13179 -11.09433 -10.88055 -10.79056 -10.63671 -10.60941 -9.89280 -9.07031 -8.66943 -8.18452 -6.36023 -0.99988 -0.31903 -0.05879 0.40030 0.65227 0.88722 1.45229 1.45989 1.50883 1.58523 1.77827 2.15475 2.28567 2.50731 3.12129 3.45239 3.78564 3.83853 4.18063 4.30257 4.38789 4.45725 4.66522 4.68650 4.76371 4.80468 4.82097 4.90960 4.93109 5.06142 5.38313 5.53191 5.54105 5.64186 5.79297 5.84754 6.06250 6.52188 6.68215 6.78110 7.22398 7.39197 8.88343 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.002611 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.539170 B =10721.323997 C =11429.910457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.698 5.698 13 C 0.580 3.420 14 O -0.583 6.583 15 C -0.273 4.273 16 C 0.009 3.991 17 C -0.273 4.273 18 S 0.142 5.858 19 C 0.370 3.630 20 N -0.573 5.573 21 C 0.098 3.902 22 C 0.079 3.921 23 N -0.550 5.550 24 C 0.057 3.943 25 S 0.257 5.743 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.014 0.986 29 H 0.267 0.733 30 H 0.399 0.601 31 H 0.153 0.847 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 -11.764 27.474 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.024 0.976 4 C -0.587 4.587 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.202 1.202 11 H -0.208 1.208 12 N -0.346 5.346 13 C 0.367 3.633 14 O -0.466 6.466 15 C -0.396 4.396 16 C -0.026 4.026 17 C -0.401 4.401 18 S 0.388 5.612 19 C -0.008 4.008 20 N -0.291 5.291 21 C -0.046 4.046 22 C -0.063 4.063 23 N -0.279 5.279 24 C -0.188 4.188 25 S 0.517 5.483 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.234 0.766 31 H 0.171 0.829 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.950 -11.845 27.154 30.947 hybrid contribution -0.084 0.555 -1.025 1.168 sum 8.865 -11.291 26.129 29.812 Atomic orbital electron populations 1.21918 0.97855 0.99698 0.99920 1.18484 0.91464 0.92137 0.81183 0.97613 1.21529 1.32809 1.13658 0.90674 0.90953 1.25794 0.94795 0.95587 1.02262 1.70051 1.36787 1.23810 1.24677 0.85265 0.78143 0.78508 0.78243 1.18445 1.20248 1.20830 1.46219 1.64926 1.13775 1.09684 1.17150 0.77614 0.85991 0.82592 1.90773 1.53621 1.16820 1.85423 1.23716 1.17916 0.99788 0.98159 1.19534 0.94218 1.00476 0.88390 1.23299 1.19024 0.97483 1.00330 1.84431 1.68356 1.06861 1.01533 1.24150 0.94544 0.92450 0.89610 1.46238 1.65924 1.10798 1.06102 1.21911 1.00870 0.77392 1.04431 1.22287 1.04636 0.97995 0.81333 1.65514 1.27578 1.35929 0.98894 1.23857 1.03715 0.91056 1.00158 1.83929 1.63327 1.03367 0.97637 0.90980 0.93985 0.96676 0.92411 0.76570 0.82917 0.92639 0.86341 0.92652 0.90300 0.86451 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.06 9.26 71.98 0.67 -6.39 16 2 C 0.27 14.56 2.56 44.24 0.11 14.67 16 3 H 0.01 0.37 7.58 -2.39 -0.02 0.36 16 4 C -0.55 -29.79 8.73 25.60 0.22 -29.57 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -52.90 11.32 21.45 0.24 -52.65 16 8 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.70 -31.68 5.06 -450.56 -2.28 -33.96 16 13 C 0.58 25.95 7.73 86.29 0.67 26.62 16 14 O -0.58 -30.48 16.43 -4.60 -0.08 -30.55 16 15 C -0.27 -9.82 6.35 23.69 0.15 -9.67 16 16 C 0.01 0.31 9.88 21.91 0.22 0.52 16 17 C -0.27 -7.79 6.95 22.38 0.16 -7.64 16 18 S 0.14 2.85 21.97 -56.49 -1.24 1.61 16 19 C 0.37 7.61 7.88 179.75 1.42 9.02 16 20 N -0.57 -7.16 3.36 -757.55 -2.55 -9.71 16 21 C 0.10 0.88 10.43 127.77 1.33 2.22 16 22 C 0.08 0.34 10.39 127.77 1.33 1.66 16 23 N -0.55 -14.66 10.11 -191.25 -1.93 -16.59 16 24 C 0.06 1.66 8.05 84.16 0.68 2.34 16 25 S 0.26 7.63 22.31 -56.49 -1.26 6.37 16 26 H 0.07 4.06 6.07 -2.39 -0.01 4.04 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.40 15.81 7.59 -92.71 -0.70 15.10 16 31 H 0.15 4.84 8.00 -2.91 -0.02 4.82 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.12 0.15 7.79 -2.39 -0.02 0.13 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 36 H 0.12 -0.17 7.92 -2.39 -0.02 -0.19 16 37 H 0.07 0.35 7.06 -2.39 -0.02 0.33 16 Total: -1.00 -73.19 343.69 0.74 -72.44 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.42 Total: 13.36 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 7.40 Total: 5.10 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -6.52 Total: -112.92 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.08 Total: -30.55 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 10.47 SS G_CDS: -2.50 Total: 7.97 kcal Total: -73.19 0.74 -72.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194636749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.959 kcal (2) G-P(sol) polarization free energy of solvation -73.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds