Wall clock time and date at job start Sat Apr 11 2020 01:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99893 * 2 1 4 4 H 1.48508 * 109.46919 * 269.99642 * 3 2 1 5 5 H 1.48497 * 109.47306 * 29.99530 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99865 * 3 2 1 7 7 C 1.37873 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00013 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00334 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47384 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47369 * 179.97438 * 10 9 7 12 12 O 1.42108 * 110.54219 * 68.37704 * 11 10 9 13 13 O 1.42095 * 110.54381 * 291.62818 * 11 10 9 14 14 C 1.76198 * 104.45149 * 179.97438 * 11 10 9 15 15 N 1.30594 * 126.27867 * 89.97825 * 14 11 10 16 16 N 1.28541 * 110.07051 * 180.02562 * 15 14 11 17 17 C 1.31461 * 109.72543 * 359.97438 * 16 15 14 18 18 C 1.47888 * 126.51589 * 179.97438 * 17 16 15 19 19 C 1.39532 * 120.15817 * 179.78008 * 18 17 16 20 20 C 1.37940 * 119.88132 * 179.67485 * 19 18 17 21 21 C 1.38396 * 120.19924 * 0.62567 * 20 19 18 22 22 C 1.38268 * 120.30834 * 359.67670 * 21 20 19 23 23 C 1.38257 * 120.11099 * 359.97438 * 22 21 20 24 24 F 1.35097 * 120.09293 * 180.02562 * 23 22 21 25 25 N 1.36130 * 126.28479 * 269.99977 * 14 11 10 26 26 H 0.97003 * 127.10349 * 359.97438 * 25 14 11 27 27 H 0.97003 * 120.00163 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46658 * 59.99683 * 9 7 2 29 29 H 1.09000 * 109.46878 * 299.99916 * 9 7 2 30 30 H 1.09004 * 109.47042 * 59.99895 * 10 9 7 31 31 H 1.09005 * 109.47228 * 300.00484 * 10 9 7 32 32 H 1.07997 * 120.05381 * 359.97438 * 19 18 17 33 33 H 1.08003 * 119.89846 * 180.31866 * 20 19 18 34 34 H 1.07996 * 119.84174 * 179.69053 * 21 20 19 35 35 H 1.07995 * 119.93985 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6639 -5.4201 -1.2355 13 8 0.6647 -5.4193 1.2385 14 6 2.5961 -6.4669 0.0005 15 7 3.1488 -7.0077 1.0529 16 7 4.0300 -7.8718 0.6935 17 6 4.0861 -7.9288 -0.6187 18 6 4.9715 -8.7969 -1.4247 19 6 4.9173 -8.7525 -2.8182 20 6 5.7504 -9.5599 -3.5645 21 6 6.6304 -10.4229 -2.9351 22 6 6.6864 -10.4780 -1.5547 23 6 5.8623 -9.6693 -0.7942 24 9 5.9177 -9.7231 0.5546 25 7 3.1705 -7.0311 -1.0972 26 1 2.9716 -6.8372 -2.0266 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8894 32 1 4.2277 -8.0837 -3.3117 33 1 5.7123 -9.5220 -4.6432 34 1 7.2765 -11.0560 -3.5250 35 1 7.3757 -11.1533 -1.0697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195125480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:45 Heat of formation + Delta-G solvation = -17.806356 kcal Electronic energy + Delta-G solvation = -24010.235423 eV Core-core repulsion = 20051.550586 eV Total energy + Delta-G solvation = -3958.684837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.17577 -43.29306 -39.42939 -36.95624 -35.78724 -34.30049 -34.05090 -32.97510 -31.33179 -31.22832 -29.78918 -25.80528 -24.82621 -23.82303 -22.81723 -22.02653 -21.51330 -19.82672 -18.49688 -17.91196 -17.25741 -16.82360 -16.69141 -16.48268 -16.10929 -15.83583 -15.57273 -15.27653 -15.05606 -14.61160 -14.41527 -13.64888 -13.61971 -12.99684 -12.63786 -12.58519 -12.39489 -11.94904 -11.91697 -11.83135 -11.72795 -11.59906 -11.27424 -11.15955 -11.11313 -10.92399 -10.77624 -10.52864 -10.49991 -9.86419 -9.49423 -9.34092 -8.94164 -8.58295 -6.20722 -4.27243 -0.02446 0.13881 0.58790 1.28105 2.17099 2.35443 2.91614 3.07802 3.22126 3.29234 3.32012 3.61836 3.65370 3.97090 4.07339 4.16362 4.24481 4.30850 4.50623 4.63686 4.85840 4.90321 5.06562 5.14945 5.32375 5.41139 5.47464 5.50286 5.52528 5.61450 5.73641 6.19478 6.24909 6.46780 7.15694 7.21233 7.71836 8.04655 8.10944 8.75799 9.38235 10.90096 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.002800 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.992369 B = 9996.918719 C =10439.259868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.549 4.549 11 S 2.491 3.509 12 O -0.932 6.932 13 O -0.902 6.902 14 C -0.334 4.334 15 N -0.186 5.186 16 N -0.264 5.264 17 C 0.242 3.758 18 C -0.065 4.065 19 C -0.072 4.072 20 C -0.128 4.128 21 C -0.071 4.071 22 C -0.155 4.155 23 C 0.151 3.849 24 F -0.110 7.110 25 N -0.530 5.530 26 H 0.440 0.560 27 H 0.267 0.733 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.224 -19.920 -9.631 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.685 4.685 11 S 2.663 3.337 12 O -0.929 6.929 13 O -0.898 6.898 14 C -0.676 4.676 15 N -0.031 5.031 16 N -0.109 5.109 17 C -0.023 4.023 18 C -0.068 4.068 19 C -0.092 4.092 20 C -0.146 4.146 21 C -0.090 4.090 22 C -0.174 4.174 23 C 0.129 3.871 24 F -0.088 7.088 25 N -0.143 5.143 26 H 0.282 0.718 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.506 -20.409 -7.970 25.229 hybrid contribution 0.906 1.144 -1.541 2.122 sum 13.412 -19.265 -9.511 25.328 Atomic orbital electron populations 1.69941 1.06116 1.27435 1.49096 1.25051 0.95005 0.99573 0.94690 0.86432 0.79766 0.82637 0.78254 1.20445 1.20907 1.19653 1.20945 0.93170 0.89301 1.52825 0.91794 1.19107 0.92680 0.89898 0.99592 1.30177 1.13516 1.13496 1.11305 1.07057 0.74699 0.76689 0.75271 1.93558 1.69084 1.85571 1.44638 1.93601 1.68033 1.84677 1.43536 1.39255 1.20666 1.20411 0.87222 1.74262 1.02415 1.03126 1.23295 1.74730 1.14450 1.14710 1.07030 1.23091 0.93434 0.94051 0.91748 1.17544 0.98144 0.98602 0.92532 1.21080 0.98664 0.98664 0.90805 1.21131 0.96165 0.96452 1.00825 1.21249 0.97137 0.97044 0.93526 1.21206 1.00747 1.00890 0.94539 1.17595 0.95704 0.95784 0.78015 1.91641 1.94812 1.94723 1.27649 1.44059 1.28948 1.30326 1.10972 0.71787 0.92357 0.94334 0.94066 0.84725 0.85585 0.84810 0.84234 0.84194 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.52 -13.73 9.11 -34.44 -0.31 -14.05 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.63 4.98 -27.88 -0.14 0.49 16 10 C -0.55 -9.75 5.92 37.16 0.22 -9.53 16 11 S 2.49 43.21 5.33 -107.50 -0.57 42.64 16 12 O -0.93 -16.94 17.95 -57.54 -1.03 -17.97 16 13 O -0.90 -18.69 17.94 -57.54 -1.03 -19.72 16 14 C -0.33 -5.39 7.89 -89.30 -0.70 -6.09 16 15 N -0.19 -3.43 12.18 30.48 0.37 -3.06 16 16 N -0.26 -4.56 10.92 32.50 0.35 -4.20 16 17 C 0.24 3.34 7.86 -154.24 -1.21 2.12 16 18 C -0.06 -0.67 5.88 -104.91 -0.62 -1.29 16 19 C -0.07 -0.50 9.71 -39.21 -0.38 -0.88 16 20 C -0.13 -0.62 10.03 -39.63 -0.40 -1.02 16 21 C -0.07 -0.33 10.04 -39.51 -0.40 -0.73 16 22 C -0.16 -1.02 10.01 -39.56 -0.40 -1.42 16 23 C 0.15 1.52 7.28 -39.02 -0.28 1.24 16 24 F -0.11 -1.41 15.82 2.25 0.04 -1.37 16 25 N -0.53 -6.78 6.15 -10.76 -0.07 -6.85 16 26 H 0.44 3.88 8.21 -40.82 -0.34 3.55 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.13 2.21 8.14 -51.92 -0.42 1.79 16 31 H 0.13 1.87 8.14 -51.92 -0.42 1.45 16 32 H 0.13 0.63 7.28 -52.49 -0.38 0.25 16 33 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 34 H 0.14 0.25 8.06 -52.49 -0.42 -0.18 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -36.50 332.89 -9.15 -45.65 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -3.22 Total: -1.36 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -4.72 Total: -29.61 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 1.40 Total: -38.76 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -2.06 Total: -37.70 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 43.21 SS G_CDS: -0.57 Total: 42.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.50 -9.15 -45.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195125480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.839 kcal (2) G-P(sol) polarization free energy of solvation -36.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds