Wall clock time and date at job start Sat Apr 11 2020 01:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 S 1.81402 * 109.47157 * 88.91280 * 3 2 1 5 5 C 1.81401 * 102.99919 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46972 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46698 * 179.97438 * 6 5 4 8 8 S 1.65602 * 119.99510 * 164.72670 * 7 6 5 9 9 O 1.42106 * 106.40261 * 178.54339 * 8 7 6 10 10 O 1.42097 * 106.40533 * 311.46033 * 8 7 6 11 11 C 1.76200 * 107.22079 * 65.00170 * 8 7 6 12 12 C 1.38630 * 119.74993 * 269.72817 * 11 8 7 13 13 C 1.37618 * 120.24695 * 179.71446 * 12 11 8 14 14 C 1.40719 * 119.74378 * 0.57642 * 13 12 11 15 15 C 1.41396 * 120.24427 * 179.67814 * 14 13 12 16 16 H 1.07991 * 120.00468 * 155.30906 * 15 14 13 17 17 C 1.39949 * 119.99931 * 335.31140 * 15 14 13 18 18 N 1.30824 * 120.00276 * 342.22899 * 17 15 14 19 19 Si 1.86800 * 120.00191 * 162.23310 * 17 15 14 20 20 H 1.48501 * 109.47159 * 94.66023 * 19 17 15 21 21 H 1.48499 * 109.47216 * 214.66410 * 19 17 15 22 22 H 1.48502 * 109.47008 * 334.66239 * 19 17 15 23 23 C 1.40711 * 119.51194 * 359.69948 * 14 13 12 24 24 C 1.37614 * 119.74678 * 359.97438 * 23 14 13 25 25 H 4.62831 * 6.06356 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47307 * 328.90693 * 3 2 1 27 27 H 1.08999 * 109.46763 * 208.90802 * 3 2 1 28 28 H 1.09007 * 109.47108 * 59.99803 * 5 4 3 29 29 H 1.09007 * 109.47083 * 300.00065 * 5 4 3 30 30 H 1.09003 * 109.47112 * 60.00686 * 6 5 4 31 31 H 1.08996 * 109.47306 * 299.99784 * 6 5 4 32 32 H 0.97002 * 120.00488 * 345.00798 * 7 6 5 33 33 H 1.08001 * 119.87848 * 359.97438 * 12 11 8 34 34 H 1.08005 * 120.12838 * 180.27790 * 13 12 11 35 35 H 0.96993 * 120.00542 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.12820 * 179.97438 * 23 14 13 37 37 H 1.07998 * 119.87955 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2508 -0.0315 -1.7100 5 6 5.0532 -0.0260 -1.5055 6 6 5.7225 -0.0524 -2.8811 7 7 7.1782 -0.0474 -2.7159 8 16 8.1573 -0.4492 -3.9896 9 8 9.4939 -0.3171 -3.5256 10 8 7.6380 -1.6567 -4.5296 11 6 7.9360 0.7851 -5.2274 12 6 6.9597 0.6192 -6.1975 13 6 6.7741 1.5795 -7.1656 14 6 7.5880 2.7274 -7.1754 15 6 7.4110 3.7175 -8.1692 16 1 7.7173 4.7353 -7.9781 17 6 6.8388 3.3785 -9.4006 18 7 6.7866 2.1261 -9.7750 19 14 6.1497 4.7144 -10.5096 20 1 7.1832 5.1214 -11.4952 21 1 4.9579 4.1956 -11.2277 22 1 5.7602 5.8881 -9.6875 23 6 8.5797 2.8824 -6.1892 24 6 8.7430 1.9124 -5.2268 25 1 -1.0500 0.0002 0.0000 26 1 3.0098 -0.8791 0.5307 27 1 3.0089 0.9004 0.4968 28 1 5.3571 -0.9051 -0.9370 29 1 5.3555 0.8746 -0.9711 30 1 5.4188 0.8264 -3.4499 31 1 5.4202 -0.9532 -3.4151 32 1 7.5684 0.1874 -1.8594 33 1 6.3395 -0.2650 -6.1910 34 1 6.0098 1.4504 -7.9178 35 1 6.3904 1.8912 -10.6286 36 1 9.2102 3.7591 -6.1876 37 1 9.5037 2.0290 -4.4691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223276747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:49 Heat of formation + Delta-G solvation = -14.965460 kcal Electronic energy + Delta-G solvation = -21696.481469 eV Core-core repulsion = 18271.840248 eV Total energy + Delta-G solvation = -3424.641221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -37.57850 -36.57766 -35.75142 -35.15364 -34.33597 -34.04104 -30.26614 -29.94942 -29.47005 -28.84007 -25.82525 -23.16895 -21.51347 -21.13510 -19.10378 -18.69257 -17.62348 -17.22518 -16.63965 -16.24739 -16.01753 -15.54401 -15.36820 -14.74778 -14.55555 -14.45031 -14.12851 -13.52187 -13.34678 -13.20673 -12.60089 -12.42095 -12.22082 -12.18429 -11.73686 -11.47628 -11.43626 -11.39587 -11.30806 -11.22029 -10.87192 -10.77860 -10.68514 -10.45362 -10.10627 -9.78528 -9.67984 -9.49468 -9.13482 -7.96535 -7.93041 -7.70915 -7.14248 -4.80342 0.87050 1.30831 2.18770 2.25170 2.45950 2.86565 2.87589 2.89618 2.92427 2.96170 3.66054 3.74349 3.90885 4.23778 4.45000 4.60771 4.73152 4.79790 4.93984 5.16916 5.22400 5.37640 5.55001 5.61647 5.75957 6.01257 6.08669 6.12411 6.67801 6.70563 6.89707 7.04442 7.19473 7.21218 7.33900 7.42185 7.63044 7.76616 7.96634 8.31580 8.50928 8.64697 9.77309 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.003300 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.404831 B = 8482.445536 C =10483.890646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.183 4.183 3 C 0.019 3.981 4 S -0.219 6.219 5 C -0.100 4.100 6 C 0.138 3.862 7 N -1.125 6.125 8 S 2.695 3.305 9 O -0.984 6.984 10 O -0.981 6.981 11 C -0.789 4.789 12 C -0.017 4.017 13 C -0.182 4.182 14 C 0.140 3.860 15 C -0.434 4.434 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.764 5.764 19 Si 0.917 3.083 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.256 1.256 23 C -0.239 4.239 24 C 0.003 3.997 25 H 0.224 0.776 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.410 0.590 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.290 0.710 36 H 0.100 0.900 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 -1.328 14.010 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.184 4.184 3 C -0.128 4.128 4 S 0.009 5.991 5 C -0.250 4.250 6 C 0.010 3.990 7 N -0.881 5.881 8 S 2.793 3.207 9 O -0.975 6.975 10 O -0.972 6.972 11 C -0.885 4.885 12 C -0.037 4.037 13 C -0.203 4.203 14 C 0.136 3.864 15 C -0.461 4.461 16 H 0.106 0.894 17 C -0.151 4.151 18 N -0.386 5.386 19 Si 0.740 3.260 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.180 1.180 23 C -0.260 4.260 24 C -0.017 4.017 25 H 0.240 0.760 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.242 0.758 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.437 -2.350 12.678 15.409 hybrid contribution 0.152 1.303 0.606 1.445 sum -8.285 -1.047 13.284 15.691 Atomic orbital electron populations 1.24907 0.95774 1.00015 0.98311 1.21770 0.93042 1.01459 1.02105 1.20139 0.88975 1.06189 0.97507 1.87402 1.04341 1.98090 1.09311 1.23643 0.93559 1.05909 1.01880 1.20791 0.79283 1.03971 0.94932 1.55813 1.15443 1.88519 1.28369 1.01204 0.72105 0.74447 0.72915 1.93496 1.34592 1.87827 1.81543 1.93492 1.80492 1.44343 1.78830 1.29086 1.17658 1.19864 1.21902 1.20265 0.93887 0.96669 0.92865 1.21343 1.02461 0.96270 1.00195 1.17857 0.87338 0.91401 0.89817 1.19940 1.32249 0.97000 0.96958 0.89437 1.26151 0.93256 0.96645 0.99013 1.69819 1.29529 1.18810 1.20419 0.86146 0.79256 0.81084 0.79556 1.19114 1.19549 1.17987 1.21021 1.02825 1.00863 1.01280 1.20152 0.94043 0.91605 0.95949 0.75970 0.87740 0.87703 0.89064 0.89028 0.90244 0.89451 0.75786 0.87834 0.85993 0.89904 0.88195 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.18 -1.76 13.35 -37.12 -0.50 -2.25 16 3 C 0.02 0.16 6.42 34.37 0.22 0.38 16 4 S -0.22 -2.43 21.69 -107.50 -2.33 -4.76 16 5 C -0.10 -0.98 6.08 37.16 0.23 -0.75 16 6 C 0.14 1.79 6.23 -4.04 -0.03 1.76 16 7 N -1.12 -15.50 6.00 -10.61 -0.06 -15.56 16 8 S 2.69 50.50 5.73 -107.50 -0.62 49.89 16 9 O -0.98 -20.34 17.26 -57.17 -0.99 -21.33 16 10 O -0.98 -20.78 16.72 -57.17 -0.96 -21.74 16 11 C -0.79 -17.12 5.97 -39.29 -0.23 -17.35 16 12 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 13 C -0.18 -4.54 8.70 -38.87 -0.34 -4.87 16 14 C 0.14 3.52 5.57 -106.82 -0.60 2.93 16 15 C -0.43 -10.60 9.05 -37.74 -0.34 -10.95 16 16 H 0.09 2.01 7.91 -52.49 -0.41 1.60 16 17 C 0.07 1.65 5.14 -17.34 -0.09 1.57 16 18 N -0.76 -18.31 10.97 55.55 0.61 -17.70 16 19 Si 0.92 16.96 29.59 -169.99 -5.03 11.93 16 20 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 23 C -0.24 -5.63 9.80 -38.88 -0.38 -6.01 16 24 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 25 H 0.22 1.00 7.80 -54.09 -0.42 0.58 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 28 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 29 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.21 7.75 -51.93 -0.40 0.80 16 32 H 0.41 4.45 8.65 -34.47 -0.30 4.15 16 33 H 0.10 2.20 7.59 -52.49 -0.40 1.81 16 34 H 0.12 3.07 6.18 -52.48 -0.32 2.75 16 35 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 36 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.10 2.06 7.60 -52.49 -0.40 1.66 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -31.23 354.37 -10.60 -41.84 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.33 Total: 9.55 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: -2.24 Total: -37.45 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.55 Total: -33.26 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.94 Total: -43.06 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 48.07 SS G_CDS: -2.95 Total: 45.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.23 -10.60 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223276747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.870 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds