Wall clock time and date at job start Sat Apr 11 2020 01:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 S 1.81402 * 109.47157 * 88.91280 * 3 2 1 5 5 C 1.81401 * 102.99919 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46972 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46698 * 179.97438 * 6 5 4 8 8 S 1.65602 * 119.99510 * 164.72670 * 7 6 5 9 9 O 1.42106 * 106.40261 * 178.54339 * 8 7 6 10 10 O 1.42097 * 106.40533 * 311.46033 * 8 7 6 11 11 C 1.76200 * 107.22079 * 65.00170 * 8 7 6 12 12 C 1.38630 * 119.74993 * 269.72817 * 11 8 7 13 13 C 1.37618 * 120.24695 * 179.71446 * 12 11 8 14 14 C 1.40719 * 119.74378 * 0.57642 * 13 12 11 15 15 C 1.41396 * 120.24427 * 179.67814 * 14 13 12 16 16 H 1.07991 * 120.00468 * 155.30906 * 15 14 13 17 17 C 1.39949 * 119.99931 * 335.31140 * 15 14 13 18 18 N 1.30824 * 120.00276 * 342.22899 * 17 15 14 19 19 Si 1.86800 * 120.00191 * 162.23310 * 17 15 14 20 20 H 1.48501 * 109.47159 * 94.66023 * 19 17 15 21 21 H 1.48499 * 109.47216 * 214.66410 * 19 17 15 22 22 H 1.48502 * 109.47008 * 334.66239 * 19 17 15 23 23 C 1.40711 * 119.51194 * 359.69948 * 14 13 12 24 24 C 1.37614 * 119.74678 * 359.97438 * 23 14 13 25 25 H 4.62831 * 6.06356 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47307 * 328.90693 * 3 2 1 27 27 H 1.08999 * 109.46763 * 208.90802 * 3 2 1 28 28 H 1.09007 * 109.47108 * 59.99803 * 5 4 3 29 29 H 1.09007 * 109.47083 * 300.00065 * 5 4 3 30 30 H 1.09003 * 109.47112 * 60.00686 * 6 5 4 31 31 H 1.08996 * 109.47306 * 299.99784 * 6 5 4 32 32 H 0.97002 * 120.00488 * 345.00798 * 7 6 5 33 33 H 1.08001 * 119.87848 * 359.97438 * 12 11 8 34 34 H 1.08005 * 120.12838 * 180.27790 * 13 12 11 35 35 H 0.96993 * 120.00542 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.12820 * 179.97438 * 23 14 13 37 37 H 1.07998 * 119.87955 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2508 -0.0315 -1.7100 5 6 5.0532 -0.0260 -1.5055 6 6 5.7225 -0.0524 -2.8811 7 7 7.1782 -0.0474 -2.7159 8 16 8.1573 -0.4492 -3.9896 9 8 9.4939 -0.3171 -3.5256 10 8 7.6380 -1.6567 -4.5296 11 6 7.9360 0.7851 -5.2274 12 6 6.9597 0.6192 -6.1975 13 6 6.7741 1.5795 -7.1656 14 6 7.5880 2.7274 -7.1754 15 6 7.4110 3.7175 -8.1692 16 1 7.7173 4.7353 -7.9781 17 6 6.8388 3.3785 -9.4006 18 7 6.7866 2.1261 -9.7750 19 14 6.1497 4.7144 -10.5096 20 1 7.1832 5.1214 -11.4952 21 1 4.9579 4.1956 -11.2277 22 1 5.7602 5.8881 -9.6875 23 6 8.5797 2.8824 -6.1892 24 6 8.7430 1.9124 -5.2268 25 1 -1.0500 0.0002 0.0000 26 1 3.0098 -0.8791 0.5307 27 1 3.0089 0.9004 0.4968 28 1 5.3571 -0.9051 -0.9370 29 1 5.3555 0.8746 -0.9711 30 1 5.4188 0.8264 -3.4499 31 1 5.4202 -0.9532 -3.4151 32 1 7.5684 0.1874 -1.8594 33 1 6.3395 -0.2650 -6.1910 34 1 6.0098 1.4504 -7.9178 35 1 6.3904 1.8912 -10.6286 36 1 9.2102 3.7591 -6.1876 37 1 9.5037 2.0290 -4.4691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223276747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:49 Heat of formation + Delta-G solvation = -34.610669 kcal Electronic energy + Delta-G solvation = -21697.333350 eV Core-core repulsion = 18271.840248 eV Total energy + Delta-G solvation = -3425.493101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.37795 -38.18444 -36.91780 -36.78130 -35.80165 -34.95144 -32.07007 -31.29030 -30.93341 -29.48490 -27.62193 -24.18757 -23.28262 -22.94264 -20.51448 -19.42987 -19.38353 -18.70522 -18.17136 -17.34617 -17.18110 -17.04825 -16.29403 -16.00310 -15.81721 -15.36728 -15.22936 -15.12981 -14.94355 -14.33142 -14.10495 -13.97200 -13.64595 -13.56686 -13.21311 -13.08657 -13.01283 -12.92255 -12.86347 -12.65468 -12.55582 -12.02502 -11.56370 -11.54366 -11.36807 -11.31019 -11.20409 -10.82653 -10.45284 -9.78811 -9.54690 -8.87278 -8.75819 -6.64922 -0.39080 0.30092 0.48685 1.06118 1.35721 1.41527 1.44190 1.53116 1.82268 2.11252 2.20894 2.30350 2.54996 2.92343 3.35398 3.53026 3.53665 3.74997 3.94837 4.25474 4.31028 4.32553 4.38536 4.42234 4.50465 4.74213 4.87028 4.92502 4.98299 5.02475 5.11473 5.24363 5.52788 5.59938 5.76417 5.93424 6.14911 6.17945 6.49405 6.59085 6.68410 6.81349 8.08072 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.003300 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.404831 B = 8482.445536 C =10483.890646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.225 4.225 3 C 0.033 3.967 4 S -0.282 6.282 5 C -0.083 4.083 6 C 0.131 3.869 7 N -1.103 6.103 8 S 2.730 3.270 9 O -0.998 6.998 10 O -1.003 7.003 11 C -0.798 4.798 12 C -0.020 4.020 13 C -0.208 4.208 14 C 0.111 3.889 15 C -0.465 4.465 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.799 5.799 19 Si 0.992 3.008 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.253 1.253 23 C -0.258 4.258 24 C -0.001 4.001 25 H 0.252 0.748 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.428 0.572 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.298 0.702 36 H 0.112 0.888 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 -0.957 15.724 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.226 4.226 3 C -0.113 4.113 4 S -0.054 6.054 5 C -0.233 4.233 6 C 0.004 3.996 7 N -0.866 5.866 8 S 2.825 3.175 9 O -0.989 6.989 10 O -0.993 6.993 11 C -0.891 4.891 12 C -0.040 4.040 13 C -0.228 4.228 14 C 0.107 3.893 15 C -0.492 4.492 16 H 0.111 0.889 17 C -0.186 4.186 18 N -0.422 5.422 19 Si 0.811 3.189 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.176 1.176 23 C -0.278 4.278 24 C -0.021 4.021 25 H 0.268 0.732 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.265 0.735 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.966 -1.958 14.386 17.064 hybrid contribution 0.274 1.084 0.230 1.141 sum -8.692 -0.875 14.616 17.028 Atomic orbital electron populations 1.25784 0.96774 0.98861 0.96678 1.22354 0.94103 1.02678 1.03490 1.20195 0.88420 1.07896 0.94835 1.87619 1.06199 1.98307 1.13251 1.23521 0.91805 1.08044 0.99905 1.20882 0.78474 1.03090 0.97135 1.55232 1.15558 1.88046 1.27726 1.00165 0.71695 0.73093 0.72556 1.93472 1.36047 1.87754 1.81584 1.93467 1.80924 1.45140 1.79805 1.29635 1.16417 1.20282 1.22774 1.20447 0.94342 0.96550 0.92691 1.21359 1.03038 0.97447 1.00963 1.18213 0.88118 0.91977 0.90944 1.20232 1.33931 0.97195 0.97861 0.88915 1.27050 0.92739 0.98856 0.99973 1.69860 1.30189 1.20765 1.21365 0.85034 0.78613 0.77875 0.77379 1.18365 1.18779 1.17616 1.21270 1.02960 1.01997 1.01583 1.20471 0.94349 0.91242 0.95999 0.73155 0.85935 0.85998 0.87007 0.86824 0.91288 0.90462 0.73527 0.86834 0.87289 0.89062 0.87007 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 19.25 74.32 1.43 -0.92 16 2 C -0.23 -4.01 13.35 31.13 0.42 -3.59 16 3 C 0.03 0.48 6.42 70.18 0.45 0.93 16 4 S -0.28 -5.95 21.69 -56.49 -1.23 -7.18 16 5 C -0.08 -1.42 6.08 71.98 0.44 -0.99 16 6 C 0.13 3.23 6.23 86.38 0.54 3.76 16 7 N -1.10 -28.01 6.00 -187.49 -1.12 -29.13 16 8 S 2.73 98.61 5.73 -56.49 -0.32 98.29 16 9 O -1.00 -39.31 17.26 -128.00 -2.21 -41.51 16 10 O -1.00 -41.56 16.72 -128.00 -2.14 -43.70 16 11 C -0.80 -34.48 5.97 22.46 0.13 -34.34 16 12 C -0.02 -0.95 9.49 22.22 0.21 -0.74 16 13 C -0.21 -10.74 8.70 22.73 0.20 -10.55 16 14 C 0.11 5.78 5.57 -21.29 -0.12 5.66 16 15 C -0.47 -23.35 9.05 23.46 0.21 -23.14 16 16 H 0.09 4.36 7.91 -2.92 -0.02 4.34 16 17 C 0.03 1.55 5.14 85.26 0.44 1.99 16 18 N -0.80 -39.39 10.97 21.83 0.24 -39.15 16 19 Si 0.99 34.80 29.59 68.60 2.03 36.83 16 20 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 21 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 22 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 23 C -0.26 -12.30 9.80 22.73 0.22 -12.08 16 24 C 0.00 -0.04 9.49 22.22 0.21 0.17 16 25 H 0.25 1.65 7.80 -4.42 -0.03 1.62 16 26 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.08 7.75 -2.39 -0.02 2.07 16 32 H 0.43 7.92 8.65 -96.74 -0.84 7.08 16 33 H 0.11 4.95 7.59 -2.91 -0.02 4.93 16 34 H 0.11 5.79 6.18 -2.91 -0.02 5.77 16 35 H 0.30 13.09 8.30 -92.71 -0.77 12.32 16 36 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 37 H 0.13 4.89 7.60 -2.91 -0.02 4.86 16 Total: -1.00 -68.57 354.37 0.28 -68.29 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.26 Total: 31.10 kcal Atomic # 6 Polarization: -78.62 SS G_CDS: 4.78 Total: -73.83 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -0.89 Total: -68.28 kcal Atomic # 8 Polarization: -80.86 SS G_CDS: -4.35 Total: -85.21 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Atomic # 16 Polarization: 92.66 SS G_CDS: -1.55 Total: 91.11 kcal Total: -68.57 0.28 -68.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223276747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.676 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds