Wall clock time and date at job start Sat Apr 11 2020 01:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48497 * 109.47499 * 275.25511 * 3 2 1 5 5 H 1.48501 * 109.46654 * 35.26191 * 3 2 1 6 6 H 1.48497 * 109.46742 * 155.25508 * 3 2 1 7 7 C 1.39045 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99533 * 342.93560 * 7 2 1 9 9 N 1.36782 * 119.99948 * 162.93815 * 7 2 1 10 10 C 1.34775 * 119.99971 * 299.55723 * 9 7 2 11 11 O 1.21862 * 119.99774 * 184.20039 * 10 9 7 12 12 C 1.41188 * 120.00323 * 4.19471 * 10 9 7 13 13 C 1.35898 * 120.00354 * 185.23089 * 12 10 9 14 14 C 1.41370 * 119.99749 * 11.88541 * 13 12 10 15 15 C 1.37173 * 125.46844 * 224.57130 * 14 13 12 16 16 C 1.37336 * 113.22702 * 179.86649 * 15 14 13 17 17 C 1.34084 * 115.10632 * 0.42979 * 16 15 14 18 18 Cl 1.73606 * 124.49904 * 179.72470 * 17 16 15 19 19 S 1.70597 * 111.00725 * 359.76148 * 17 16 15 20 20 C 1.46500 * 119.99764 * 119.55427 * 9 7 2 21 21 C 1.54964 * 110.92278 * 121.31253 * 20 9 7 22 22 C 1.54263 * 104.16217 * 156.29500 * 21 20 9 23 23 C 1.53871 * 106.63825 * 336.44150 * 22 21 20 24 24 C 1.54266 * 106.59955 * 359.97438 * 23 22 21 25 25 H 0.96997 * 119.99947 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99669 * 5.22900 * 12 10 9 27 27 H 1.07998 * 120.00162 * 191.89225 * 13 12 10 28 28 H 1.07996 * 123.38386 * 0.02562 * 15 14 13 29 29 H 1.08007 * 122.44464 * 180.18932 * 16 15 14 30 30 H 1.08998 * 110.67321 * 357.99949 * 20 9 7 31 31 H 1.08995 * 110.47962 * 37.63442 * 21 20 9 32 32 H 1.09009 * 110.52387 * 274.97413 * 21 20 9 33 33 H 1.08998 * 110.02922 * 217.13264 * 22 21 20 34 34 H 1.08999 * 110.03154 * 95.75070 * 22 21 20 35 35 H 1.09004 * 110.03103 * 119.26189 * 23 22 21 36 36 H 1.09002 * 110.03069 * 240.64189 * 23 22 21 37 37 H 1.09003 * 110.48614 * 142.28891 * 24 23 22 38 38 H 1.08999 * 110.48691 * 264.80048 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.3843 2.1106 -1.3941 5 1 1.5052 2.6179 0.8083 6 1 3.5964 1.4106 0.5860 7 6 2.0090 -1.2042 -0.0005 8 1 1.5046 -2.1189 0.2735 9 7 3.3317 -1.2301 -0.3481 10 6 3.7144 -0.8219 -1.5742 11 8 4.8817 -0.9165 -1.9111 12 6 2.7629 -0.2847 -2.4684 13 6 3.1261 0.0280 -3.7401 14 6 4.3711 -0.4094 -4.2474 15 6 5.2499 0.3571 -4.9697 16 6 6.3867 -0.3213 -5.3350 17 6 6.4385 -1.6006 -4.9369 18 17 7.7555 -2.6815 -5.2701 19 16 5.0380 -2.0255 -4.0603 20 6 4.3324 -1.7015 0.6125 21 6 5.1192 -2.9094 0.0440 22 6 6.4515 -2.8917 0.8215 23 6 6.6550 -1.4482 1.3139 24 6 5.4394 -0.6379 0.8182 25 1 -0.4850 0.8400 0.0004 26 1 1.7463 -0.1224 -2.1418 27 1 2.4638 0.6107 -4.3630 28 1 5.0673 1.3909 -5.2233 29 1 7.1794 0.1409 -5.9048 30 1 3.8630 -1.9591 1.5619 31 1 5.2984 -2.7797 -1.0232 32 1 4.5806 -3.8385 0.2311 33 1 7.2712 -3.1810 0.1640 34 1 6.3969 -3.5719 1.6714 35 1 6.6984 -1.4278 2.4029 36 1 7.5741 -1.0372 0.8961 37 1 5.1340 0.0901 1.5698 38 1 5.6716 -0.1389 -0.1227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255728611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:52 Heat of formation + Delta-G solvation = 26.833713 kcal Electronic energy + Delta-G solvation = -23938.423121 eV Core-core repulsion = 20513.550742 eV Total energy + Delta-G solvation = -3424.872379 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.79625 -37.73903 -36.80512 -36.15766 -34.58676 -33.05351 -31.89648 -28.50778 -28.10502 -27.11283 -24.83469 -23.99280 -22.28768 -20.20118 -19.80978 -19.38692 -18.69989 -17.85104 -16.35807 -15.80690 -15.57321 -15.34858 -14.80734 -14.17147 -13.98167 -13.66934 -13.33815 -13.13787 -12.96761 -12.92070 -12.66318 -12.47869 -12.25553 -11.92128 -11.38401 -11.35243 -11.16990 -10.88017 -10.82115 -10.77864 -10.63780 -10.44907 -10.35565 -10.19403 -10.02169 -9.86845 -9.16453 -9.04016 -8.59777 -8.05485 -7.43499 -7.12331 -6.58880 -4.41974 0.74301 1.64311 2.15942 2.42651 2.69938 3.06501 3.10183 3.18268 3.27466 4.04566 4.23802 4.45979 4.74882 5.25298 5.26618 5.39749 5.41999 5.67201 5.73570 5.80036 6.01295 6.04640 6.13509 6.17079 6.19177 6.25189 6.33804 6.42179 6.42727 6.46741 6.57266 6.63531 6.85162 6.88503 6.95053 6.99526 7.05154 7.61335 7.77349 8.34965 8.87383 9.15535 9.61420 10.47839 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.006033 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.218579 B = 4640.367576 C = 5942.156594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.852 3.148 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.354 4.354 8 H 0.099 0.901 9 N -0.445 5.445 10 C 0.500 3.500 11 O -0.569 6.569 12 C -0.156 4.156 13 C -0.061 4.061 14 C -0.143 4.143 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.216 4.216 18 Cl -0.041 7.041 19 S 0.326 5.674 20 C 0.139 3.861 21 C -0.138 4.138 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.140 4.140 25 H 0.277 0.723 26 H 0.151 0.849 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.624 -1.818 -5.895 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.129 4.129 3 Si 0.676 3.324 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.482 4.482 8 H 0.117 0.883 9 N -0.163 5.163 10 C 0.293 3.707 11 O -0.457 6.457 12 C -0.180 4.180 13 C -0.084 4.084 14 C -0.263 4.263 15 C -0.165 4.165 16 C -0.168 4.168 17 C -0.361 4.361 18 Cl -0.013 7.013 19 S 0.597 5.403 20 C 0.035 3.965 21 C -0.176 4.176 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.178 4.178 25 H 0.088 0.912 26 H 0.168 0.832 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.655 -3.271 -5.335 10.681 hybrid contribution 0.850 2.429 -0.375 2.601 sum 9.505 -0.842 -5.711 11.121 Atomic orbital electron populations 1.69713 1.06290 1.28465 1.44621 1.25738 0.95146 0.98435 0.93609 0.87132 0.81769 0.83704 0.79777 1.18805 1.20905 1.17596 1.18981 0.82832 0.95649 1.50692 0.88343 1.43588 1.06752 1.56487 1.09466 1.17358 0.88561 0.81708 0.83042 1.90799 1.19577 1.59382 1.75959 1.22881 1.02312 0.99095 0.93745 1.20504 0.93581 0.98820 0.95493 1.22493 1.00308 0.98579 1.04895 1.20376 0.93726 1.00349 1.02020 1.19653 0.99986 0.92646 1.04488 1.24995 1.00362 0.97546 1.13237 1.98309 1.45736 1.62898 1.94378 1.82997 1.06870 1.08613 1.41812 1.22206 0.88619 0.93000 0.92690 1.22766 0.94883 0.97531 1.02450 1.21985 0.97905 0.96411 0.99050 1.21991 0.98319 0.95609 0.99436 1.22769 0.94801 0.98158 1.02066 0.91202 0.83193 0.84857 0.84350 0.84996 0.89567 0.89085 0.92705 0.92469 0.92723 0.92738 0.92547 0.92780 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.22 13.96 55.50 0.77 -21.45 16 2 C 0.08 1.97 3.76 -17.45 -0.07 1.91 16 3 Si 0.85 19.47 25.38 -169.99 -4.31 15.15 16 4 H -0.26 -5.88 6.73 56.52 0.38 -5.50 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.25 -5.87 6.15 56.52 0.35 -5.53 16 7 C -0.35 -8.70 8.95 -15.04 -0.13 -8.84 16 8 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.44 -9.98 1.83 -108.92 -0.20 -10.18 16 10 C 0.50 10.98 5.03 -15.14 -0.08 10.90 16 11 O -0.57 -12.34 7.75 5.04 0.04 -12.30 16 12 C -0.16 -3.28 6.90 -39.30 -0.27 -3.55 16 13 C -0.06 -1.11 9.88 -39.23 -0.39 -1.50 16 14 C -0.14 -2.53 4.57 -38.78 -0.18 -2.70 16 15 C -0.13 -2.15 10.25 -40.30 -0.41 -2.56 16 16 C -0.13 -2.05 10.08 -41.37 -0.42 -2.47 16 17 C -0.22 -3.47 6.82 29.27 0.20 -3.27 16 18 Cl -0.04 -0.59 29.27 -51.86 -1.52 -2.11 16 19 S 0.33 5.60 19.46 -107.50 -2.09 3.51 16 20 C 0.14 2.78 3.33 -65.90 -0.22 2.56 16 21 C -0.14 -2.47 6.21 -25.03 -0.16 -2.63 16 22 C -0.12 -1.77 6.80 -25.62 -0.17 -1.94 16 23 C -0.12 -1.83 6.80 -25.61 -0.17 -2.00 16 24 C -0.14 -2.68 5.70 -25.07 -0.14 -2.82 16 25 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.15 3.36 5.08 -52.49 -0.27 3.09 16 27 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 28 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.09 1.71 7.95 -51.93 -0.41 1.30 16 31 H 0.09 1.78 5.93 -51.93 -0.31 1.47 16 32 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 1.04 7.69 -51.93 -0.40 0.64 16 38 H 0.09 1.86 5.88 -51.93 -0.31 1.55 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -25.69 326.51 -9.71 -35.40 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.71 Total: 5.96 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.61 Total: -18.91 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.58 Total: -31.63 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.04 Total: -12.30 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.31 Total: 15.15 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -2.09 Total: 3.51 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.52 Total: -2.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.69 -9.71 -35.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255728611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.234 kcal (2) G-P(sol) polarization free energy of solvation -25.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds