Wall clock time and date at job start Sat Apr 11 2020 01:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48497 * 109.47499 * 275.25511 * 3 2 1 5 5 H 1.48501 * 109.46654 * 35.26191 * 3 2 1 6 6 H 1.48497 * 109.46742 * 155.25508 * 3 2 1 7 7 C 1.39045 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99533 * 342.93560 * 7 2 1 9 9 N 1.36782 * 119.99948 * 162.93815 * 7 2 1 10 10 C 1.34775 * 119.99971 * 299.55723 * 9 7 2 11 11 O 1.21862 * 119.99774 * 184.20039 * 10 9 7 12 12 C 1.41188 * 120.00323 * 4.19471 * 10 9 7 13 13 C 1.35898 * 120.00354 * 185.23089 * 12 10 9 14 14 C 1.41370 * 119.99749 * 11.88541 * 13 12 10 15 15 C 1.37173 * 125.46844 * 224.57130 * 14 13 12 16 16 C 1.37336 * 113.22702 * 179.86649 * 15 14 13 17 17 C 1.34084 * 115.10632 * 0.42979 * 16 15 14 18 18 Cl 1.73606 * 124.49904 * 179.72470 * 17 16 15 19 19 S 1.70597 * 111.00725 * 359.76148 * 17 16 15 20 20 C 1.46500 * 119.99764 * 119.55427 * 9 7 2 21 21 C 1.54964 * 110.92278 * 121.31253 * 20 9 7 22 22 C 1.54263 * 104.16217 * 156.29500 * 21 20 9 23 23 C 1.53871 * 106.63825 * 336.44150 * 22 21 20 24 24 C 1.54266 * 106.59955 * 359.97438 * 23 22 21 25 25 H 0.96997 * 119.99947 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99669 * 5.22900 * 12 10 9 27 27 H 1.07998 * 120.00162 * 191.89225 * 13 12 10 28 28 H 1.07996 * 123.38386 * 0.02562 * 15 14 13 29 29 H 1.08007 * 122.44464 * 180.18932 * 16 15 14 30 30 H 1.08998 * 110.67321 * 357.99949 * 20 9 7 31 31 H 1.08995 * 110.47962 * 37.63442 * 21 20 9 32 32 H 1.09009 * 110.52387 * 274.97413 * 21 20 9 33 33 H 1.08998 * 110.02922 * 217.13264 * 22 21 20 34 34 H 1.08999 * 110.03154 * 95.75070 * 22 21 20 35 35 H 1.09004 * 110.03103 * 119.26189 * 23 22 21 36 36 H 1.09002 * 110.03069 * 240.64189 * 23 22 21 37 37 H 1.09003 * 110.48614 * 142.28891 * 24 23 22 38 38 H 1.08999 * 110.48691 * 264.80048 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.3843 2.1106 -1.3941 5 1 1.5052 2.6179 0.8083 6 1 3.5964 1.4106 0.5860 7 6 2.0090 -1.2042 -0.0005 8 1 1.5046 -2.1189 0.2735 9 7 3.3317 -1.2301 -0.3481 10 6 3.7144 -0.8219 -1.5742 11 8 4.8817 -0.9165 -1.9111 12 6 2.7629 -0.2847 -2.4684 13 6 3.1261 0.0280 -3.7401 14 6 4.3711 -0.4094 -4.2474 15 6 5.2499 0.3571 -4.9697 16 6 6.3867 -0.3213 -5.3350 17 6 6.4385 -1.6006 -4.9369 18 17 7.7555 -2.6815 -5.2701 19 16 5.0380 -2.0255 -4.0603 20 6 4.3324 -1.7015 0.6125 21 6 5.1192 -2.9094 0.0440 22 6 6.4515 -2.8917 0.8215 23 6 6.6550 -1.4482 1.3139 24 6 5.4394 -0.6379 0.8182 25 1 -0.4850 0.8400 0.0004 26 1 1.7463 -0.1224 -2.1418 27 1 2.4638 0.6107 -4.3630 28 1 5.0673 1.3909 -5.2233 29 1 7.1794 0.1409 -5.9048 30 1 3.8630 -1.9591 1.5619 31 1 5.2984 -2.7797 -1.0232 32 1 4.5806 -3.8385 0.2311 33 1 7.2712 -3.1810 0.1640 34 1 6.3969 -3.5719 1.6714 35 1 6.6984 -1.4278 2.4029 36 1 7.5741 -1.0372 0.8961 37 1 5.1340 0.0901 1.5698 38 1 5.6716 -0.1389 -0.1227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255728611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:22:51 Heat of formation + Delta-G solvation = 15.987219 kcal Electronic energy + Delta-G solvation = -23938.893460 eV Core-core repulsion = 20513.550742 eV Total energy + Delta-G solvation = -3425.342719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40657 -39.05564 -38.18785 -37.42337 -36.30338 -34.51633 -33.71407 -29.90717 -29.51684 -28.56903 -26.52267 -25.46121 -23.74571 -21.72047 -21.13200 -20.69085 -20.41198 -19.37618 -17.95833 -17.33112 -17.13224 -16.74056 -16.30560 -15.73529 -15.61322 -15.09798 -14.89248 -14.75905 -14.32968 -14.24953 -14.15147 -13.94499 -13.66519 -13.32828 -12.97726 -12.90259 -12.81271 -12.37681 -12.23734 -12.16911 -12.04008 -11.96970 -11.80375 -11.67315 -11.54304 -11.16600 -10.89557 -10.57059 -10.20377 -9.54256 -8.95381 -8.61361 -8.48152 -6.35081 -0.65421 0.35362 0.78379 1.13416 1.25160 1.32279 1.40781 1.43413 1.80846 2.18690 2.57341 2.87073 2.90509 3.86920 3.87928 4.03992 4.08651 4.31991 4.41943 4.53323 4.58473 4.66941 4.71307 4.76499 4.81496 4.91131 4.96606 5.01384 5.12126 5.13766 5.22419 5.27080 5.39505 5.44875 5.48908 5.57321 5.59646 5.77540 6.01588 6.45428 6.98493 7.42738 7.87601 8.60142 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.006033 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.218579 B = 4640.367576 C = 5942.156594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.253 1.253 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.350 4.350 8 H 0.067 0.933 9 N -0.461 5.461 10 C 0.505 3.495 11 O -0.568 6.568 12 C -0.209 4.209 13 C -0.020 4.020 14 C -0.179 4.179 15 C -0.115 4.115 16 C -0.136 4.136 17 C -0.213 4.213 18 Cl -0.024 7.024 19 S 0.295 5.705 20 C 0.130 3.870 21 C -0.134 4.134 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.136 4.136 25 H 0.281 0.719 26 H 0.131 0.869 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.042 -1.107 -7.103 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.148 4.148 3 Si 0.720 3.280 4 H -0.178 1.178 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.085 0.915 9 N -0.180 5.180 10 C 0.299 3.701 11 O -0.456 6.456 12 C -0.232 4.232 13 C -0.042 4.042 14 C -0.298 4.298 15 C -0.145 4.145 16 C -0.170 4.170 17 C -0.359 4.359 18 Cl 0.004 6.996 19 S 0.566 5.434 20 C 0.026 3.974 21 C -0.172 4.172 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.175 4.175 25 H 0.091 0.909 26 H 0.149 0.851 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.177 0.823 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.085 -2.569 -6.553 13.131 hybrid contribution 0.239 2.133 -0.212 2.157 sum 11.324 -0.436 -6.765 13.199 Atomic orbital electron populations 1.69771 1.07347 1.29205 1.46520 1.26053 0.95327 1.00238 0.93218 0.86461 0.80256 0.81253 0.80031 1.17774 1.20886 1.18523 1.18700 0.84102 0.94588 1.50454 0.91511 1.43603 1.06182 1.57887 1.10367 1.17490 0.88793 0.80946 0.82916 1.90786 1.19523 1.59281 1.75971 1.22689 1.01552 1.03706 0.95299 1.20896 0.93598 0.95427 0.94234 1.22606 1.01080 0.99192 1.06972 1.20763 0.92936 1.01338 0.99510 1.19988 1.00505 0.92278 1.04254 1.25152 1.00169 0.98155 1.12393 1.98319 1.44625 1.62488 1.94181 1.83150 1.08022 1.09364 1.42832 1.22334 0.88531 0.94277 0.92264 1.22699 0.96209 0.96665 1.01642 1.21966 0.96355 0.96660 0.99640 1.21975 0.96821 0.95125 1.00756 1.22689 0.96053 0.98044 1.00695 0.90875 0.85136 0.81757 0.81642 0.82337 0.90104 0.90858 0.92395 0.91507 0.90472 0.90635 0.91715 0.93548 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.81 13.96 21.68 0.30 -47.50 16 2 C 0.06 2.95 3.76 84.95 0.32 3.27 16 3 Si 0.90 40.78 25.38 68.60 1.74 42.52 16 4 H -0.25 -11.01 6.73 99.48 0.67 -10.34 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -12.14 6.15 99.48 0.61 -11.52 16 7 C -0.35 -18.00 8.95 84.11 0.75 -17.25 16 8 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 9 N -0.46 -21.25 1.83 -616.65 -1.13 -22.38 16 10 C 0.50 22.40 5.03 84.97 0.43 22.83 16 11 O -0.57 -24.50 7.75 -4.87 -0.04 -24.53 16 12 C -0.21 -8.79 6.90 22.45 0.15 -8.63 16 13 C -0.02 -0.68 9.88 22.50 0.22 -0.46 16 14 C -0.18 -5.96 4.57 22.79 0.10 -5.86 16 15 C -0.12 -3.26 10.25 21.81 0.22 -3.03 16 16 C -0.14 -3.72 10.08 21.11 0.21 -3.50 16 17 C -0.21 -6.33 6.82 66.87 0.46 -5.88 16 18 Cl -0.02 -0.64 29.27 -2.72 -0.08 -0.72 16 19 S 0.29 9.85 19.46 -56.49 -1.10 8.75 16 20 C 0.13 5.25 3.33 46.31 0.15 5.40 16 21 C -0.13 -4.74 6.21 31.69 0.20 -4.54 16 22 C -0.11 -3.08 6.80 31.32 0.21 -2.86 16 23 C -0.11 -3.20 6.80 31.32 0.21 -2.99 16 24 C -0.14 -5.17 5.70 31.67 0.18 -4.99 16 25 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 26 H 0.13 6.01 5.08 -2.91 -0.01 6.00 16 27 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16 29 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 30 H 0.08 3.28 7.95 -2.39 -0.02 3.26 16 31 H 0.07 2.87 5.93 -2.39 -0.01 2.85 16 32 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.78 7.69 -2.39 -0.02 1.76 16 38 H 0.06 2.66 5.88 -2.39 -0.01 2.64 16 Total: -1.00 -56.26 326.51 4.48 -51.78 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.95 Total: 20.58 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 3.83 Total: -28.50 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.83 Total: -69.88 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.04 Total: -24.53 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.74 Total: 42.52 kcal Atomic # 16 Polarization: 9.85 SS G_CDS: -1.10 Total: 8.75 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -56.26 4.48 -51.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255728611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.771 kcal (2) G-P(sol) polarization free energy of solvation -56.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds