Wall clock time and date at job start Sat Apr 11 2020 01:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46882 * 111.85687 * 3 2 1 5 5 C 1.37097 * 119.99949 * 265.07145 * 4 3 2 6 6 H 1.07996 * 119.99885 * 198.07279 * 5 4 3 7 7 C 1.38954 * 119.99708 * 18.06949 * 5 4 3 8 8 N 1.31409 * 120.00176 * 12.99606 * 7 5 4 9 9 Si 1.86796 * 119.99634 * 192.98854 * 7 5 4 10 10 H 1.48495 * 109.47477 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47147 * 120.00746 * 9 7 5 12 12 H 1.48504 * 109.47348 * 240.00385 * 9 7 5 13 13 C 1.34776 * 119.99852 * 85.07772 * 4 3 2 14 14 O 1.21298 * 119.99785 * 185.37145 * 13 4 3 15 15 C 1.50698 * 120.00337 * 5.36170 * 13 4 3 16 16 H 1.08994 * 109.47163 * 315.83433 * 15 13 4 17 17 C 1.52999 * 109.46554 * 75.83440 * 15 13 4 18 18 O 1.42898 * 109.47356 * 195.83290 * 15 13 4 19 19 C 1.35968 * 117.00007 * 154.30067 * 18 15 13 20 20 C 1.38675 * 120.03756 * 5.16673 * 19 18 15 21 21 C 1.38152 * 119.98459 * 180.25867 * 20 19 18 22 22 C 1.38469 * 120.05336 * 359.47009 * 21 20 19 23 23 F 1.35096 * 119.97030 * 180.25455 * 22 21 20 24 24 C 1.38439 * 120.06412 * 0.27918 * 22 21 20 25 25 C 1.38264 * 120.01656 * 359.97438 * 24 22 21 26 26 Cl 1.73601 * 120.02402 * 179.97438 * 25 24 22 27 27 H 4.40639 * 5.51406 * 180.02562 * 4 1 2 28 28 H 1.08995 * 109.47542 * 351.85042 * 3 2 1 29 29 H 1.09001 * 109.47049 * 231.85487 * 3 2 1 30 30 H 0.96995 * 119.99933 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.47505 * 67.28260 * 17 15 13 32 32 H 1.09005 * 109.46934 * 187.27883 * 17 15 13 33 33 H 1.09003 * 109.47612 * 307.27917 * 17 15 13 34 34 H 1.08007 * 120.00675 * 0.02652 * 20 19 18 35 35 H 1.08001 * 119.97502 * 179.75168 * 21 20 19 36 36 H 1.08000 * 119.98759 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5151 -1.2820 5 6 3.4591 -0.3547 -2.2906 6 1 4.0800 -0.0237 -3.1099 7 6 2.9897 -1.6621 -2.2587 8 7 2.0390 -1.9986 -1.4161 9 14 3.7099 -2.9414 -3.4137 10 1 4.7589 -2.3131 -4.2562 11 1 4.3083 -4.0444 -2.6195 12 1 2.6354 -3.4842 -4.2832 13 6 3.2637 1.8434 -1.4697 14 8 3.5738 2.2744 -2.5602 15 6 3.0230 2.7933 -0.3247 16 1 2.1235 2.4936 0.2130 17 6 4.2209 2.7593 0.6264 18 8 2.8552 4.1185 -0.8324 19 6 2.1258 4.9814 -0.0762 20 6 1.6740 4.5953 1.1768 21 6 0.9283 5.4711 1.9420 22 6 0.6409 6.7383 1.4635 23 9 -0.0840 7.5952 2.2154 24 6 1.0953 7.1279 0.2152 25 6 1.8373 6.2518 -0.5552 26 17 2.4066 6.7398 -2.1209 27 1 -1.0501 0.0001 0.0002 28 1 3.0099 -1.0164 0.1457 29 1 3.0091 0.6356 0.8082 30 1 1.7111 -2.9112 -1.3941 31 1 5.0934 3.1807 0.1271 32 1 3.9941 3.3449 1.5174 33 1 4.4287 1.7282 0.9124 34 1 1.9018 3.6087 1.5527 35 1 0.5731 5.1688 2.9161 36 1 0.8700 8.1164 -0.1569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281616266.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:23:17 Heat of formation + Delta-G solvation = -17.927428 kcal Electronic energy + Delta-G solvation = -24992.046491 eV Core-core repulsion = 20999.019947 eV Total energy + Delta-G solvation = -3993.026544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.99222 -40.47831 -38.82430 -37.19602 -36.32711 -35.22901 -32.56748 -31.70331 -31.25985 -30.84102 -29.27285 -26.59408 -25.35152 -24.04279 -23.15797 -22.19472 -19.47013 -18.55362 -18.04243 -17.45026 -17.01626 -16.64721 -16.00434 -15.84583 -15.35036 -15.05408 -14.93004 -14.54042 -14.19464 -14.12800 -13.75595 -13.51259 -13.31060 -12.91120 -12.64041 -12.46328 -12.22019 -11.94056 -11.71250 -11.54372 -11.36914 -11.12002 -11.07996 -10.83751 -10.72888 -10.55884 -10.40200 -9.50016 -9.42814 -9.18411 -8.96575 -8.54947 -8.10701 -8.00020 -6.40613 -4.00108 0.81384 0.98815 2.08956 2.92988 3.08253 3.21086 3.27229 3.29083 3.55435 3.75933 3.93127 4.09754 4.13303 4.46790 4.60500 4.72915 4.84748 4.94544 5.10900 5.12178 5.26755 5.29680 5.37576 5.52076 5.68025 5.72995 5.78796 5.87650 5.95899 6.09366 6.29931 6.44468 6.70035 6.94961 7.27361 7.45653 7.90409 8.30533 8.69766 9.00144 9.19776 9.72141 10.58416 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.003665 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.207370 B = 7637.212046 C = 8489.023809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.116 4.116 3 C 0.224 3.776 4 N -0.435 5.435 5 C -0.307 4.307 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.871 5.871 9 Si 0.929 3.071 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.455 3.545 14 O -0.556 6.556 15 C 0.068 3.932 16 H 0.088 0.912 17 C -0.176 4.176 18 O -0.264 6.264 19 C 0.144 3.856 20 C -0.176 4.176 21 C -0.104 4.104 22 C 0.061 3.939 23 F -0.138 7.138 24 C -0.107 4.107 25 C -0.048 4.048 26 Cl -0.039 7.039 27 H 0.200 0.800 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.269 0.731 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.468 11.014 9.897 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.117 4.117 3 C 0.101 3.899 4 N -0.155 5.155 5 C -0.434 4.434 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.509 5.509 9 Si 0.755 3.245 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.241 3.759 14 O -0.437 6.437 15 C 0.009 3.991 16 H 0.106 0.894 17 C -0.233 4.233 18 O -0.175 6.175 19 C 0.096 3.904 20 C -0.194 4.194 21 C -0.123 4.123 22 C 0.042 3.958 23 F -0.117 7.117 24 C -0.127 4.127 25 C -0.076 4.076 26 Cl -0.010 7.010 27 H 0.217 0.783 28 H 0.140 0.860 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.235 11.129 9.053 14.399 hybrid contribution -0.385 -0.788 -0.287 0.923 sum -1.621 10.341 8.766 13.653 Atomic orbital electron populations 1.24326 0.95427 1.05289 1.02731 1.23166 0.94341 0.96383 0.97858 1.18525 0.84370 1.02001 0.85036 1.43579 1.56303 1.03196 1.12400 1.19777 1.29394 0.90354 1.03918 0.87637 1.25339 0.95205 0.98694 0.98093 1.69991 1.24451 1.19643 1.36864 0.85811 0.78986 0.79909 0.79749 1.19153 1.20546 1.20743 1.19407 0.85434 0.82636 0.88375 1.90586 1.51368 1.76101 1.25645 1.22442 0.99752 0.80910 0.96042 0.89401 1.22385 0.98453 1.03883 0.98624 1.86360 1.65370 1.20866 1.44944 1.18875 0.91747 0.89588 0.90239 1.21213 1.02579 1.01779 0.93867 1.21009 0.98381 0.91822 1.01059 1.17253 0.98779 0.89039 0.90759 1.91496 1.75444 1.69413 1.75335 1.20773 0.98447 1.00559 0.92922 1.19850 1.04218 0.92929 0.90611 1.98398 1.87624 1.91059 1.23946 0.78323 0.85992 0.92254 0.91995 0.90509 0.91630 0.89742 0.83211 0.83885 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.11 19.25 29.55 0.57 -4.55 16 2 C -0.12 -2.45 10.88 -37.12 -0.40 -2.86 16 3 C 0.22 4.58 4.69 -6.83 -0.03 4.55 16 4 N -0.43 -10.41 2.60 -117.94 -0.31 -10.71 16 5 C -0.31 -8.10 9.35 -14.93 -0.14 -8.24 16 6 H 0.11 2.94 7.39 -52.49 -0.39 2.55 16 7 C 0.03 0.75 5.08 -17.47 -0.09 0.66 16 8 N -0.87 -21.73 8.99 55.50 0.50 -21.24 16 9 Si 0.93 19.87 29.57 -169.99 -5.03 14.84 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.45 10.75 6.85 -10.99 -0.08 10.67 16 14 O -0.56 -15.45 16.26 -13.85 -0.23 -15.67 16 15 C 0.07 1.23 1.80 -27.88 -0.05 1.18 16 16 H 0.09 1.46 4.87 -51.93 -0.25 1.21 16 17 C -0.18 -2.49 8.86 37.16 0.33 -2.16 16 18 O -0.26 -4.93 8.84 -39.03 -0.34 -5.27 16 19 C 0.14 2.20 6.60 -39.21 -0.26 1.95 16 20 C -0.18 -2.19 8.35 -39.45 -0.33 -2.52 16 21 C -0.10 -1.13 10.02 -39.53 -0.40 -1.52 16 22 C 0.06 0.71 7.30 -39.42 -0.29 0.42 16 23 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 24 C -0.11 -1.28 9.80 -39.50 -0.39 -1.66 16 25 C -0.05 -0.69 6.33 -39.37 -0.25 -0.94 16 26 Cl -0.04 -0.59 28.50 -51.86 -1.48 -2.07 16 27 H 0.20 3.21 7.80 -54.09 -0.42 2.79 16 28 H 0.12 2.66 6.27 -51.93 -0.33 2.33 16 29 H 0.06 0.97 4.92 -51.93 -0.26 0.71 16 30 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.73 6.95 -51.93 -0.36 0.37 16 33 H 0.08 1.13 6.33 -51.93 -0.33 0.80 16 34 H 0.15 1.67 5.37 -52.48 -0.28 1.39 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -30.75 330.97 -6.67 -37.42 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.02 Total: 4.28 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.80 Total: -5.02 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.19 Total: -31.95 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.57 Total: -20.94 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.75 -6.67 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281616266.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.497 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds