Wall clock time and date at job start Sat Apr 11 2020 01:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47250 * 89.99260 * 9 7 5 11 11 H 1.48497 * 109.47067 * 209.99831 * 9 7 5 12 12 H 1.48502 * 109.46618 * 329.99589 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 C 1.76207 * 107.21624 * 269.72430 * 13 3 2 17 17 C 1.31817 * 122.55589 * 114.71530 * 16 13 3 18 18 S 1.75301 * 111.40587 * 179.86089 * 17 16 13 19 19 C 1.75901 * 92.18924 * 0.34029 * 18 17 16 20 20 C 1.39853 * 130.56255 * 179.81876 * 19 18 17 21 21 C 1.37464 * 120.17763 * 179.97438 * 20 19 18 22 22 C 1.38850 * 120.18999 * 0.02562 * 21 20 19 23 23 C 1.36093 * 120.59384 * 0.02562 * 22 21 20 24 24 C 1.39746 * 109.68380 * 359.81483 * 19 18 17 25 25 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 26 26 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 27 27 H 1.08991 * 109.47557 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 29 29 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 30 30 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 31 31 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 32 32 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 33 33 H 1.08009 * 124.29845 * 359.97438 * 17 16 13 34 34 H 1.07997 * 119.91344 * 0.02562 * 20 19 18 35 35 H 1.08006 * 119.90897 * 179.97438 * 21 20 19 36 36 H 1.08009 * 119.70712 * 179.97438 * 22 21 20 37 37 H 1.07991 * 119.77555 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.5225 2.9383 3.3705 11 1 5.4039 2.0494 5.3299 12 1 5.9193 0.5913 3.4620 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 6 4.1112 1.8034 -1.7368 17 6 4.5245 1.0792 -2.7577 18 16 6.2727 0.9529 -2.7863 19 6 6.4344 1.9270 -1.3306 20 6 7.5744 2.3288 -0.6271 21 6 7.4522 3.1017 0.5030 22 6 6.1965 3.4876 0.9528 23 6 5.0741 3.1068 0.2839 24 6 5.1693 2.3140 -0.8803 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0923 3.1802 1.0756 31 1 1.3617 1.8097 1.9453 32 1 3.2794 3.5880 4.5379 33 1 3.8694 0.6232 -3.4853 34 1 8.5533 2.0316 -0.9731 35 1 8.3355 3.4092 1.0432 36 1 6.1096 4.0946 1.8419 37 1 4.1041 3.4148 0.6452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285030506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:23:19 Heat of formation + Delta-G solvation = -20.419309 kcal Electronic energy + Delta-G solvation = -24469.927402 eV Core-core repulsion = 21045.049684 eV Total energy + Delta-G solvation = -3424.877718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.10110 -36.76488 -36.19792 -35.33258 -34.94545 -32.99165 -30.53868 -30.00836 -29.06889 -26.77387 -23.85058 -23.26974 -22.31559 -21.78957 -20.93859 -18.15221 -17.88373 -16.89209 -16.69841 -16.23906 -15.71702 -15.11363 -15.04563 -14.59682 -14.24912 -13.95201 -13.52321 -13.29329 -13.20113 -12.99577 -12.53120 -12.16269 -12.07831 -11.92353 -11.77602 -11.56555 -11.48915 -11.36422 -11.23767 -11.03165 -10.76166 -10.64730 -10.46602 -10.38010 -10.10892 -10.06018 -9.92301 -9.27991 -8.61243 -8.20334 -8.13246 -7.56008 -6.26236 -4.25308 0.77819 0.96758 1.70470 1.74687 2.10543 2.21849 3.15599 3.26560 3.30176 3.58200 4.18142 4.26531 4.29703 4.72370 5.00800 5.08867 5.21894 5.35310 5.39523 5.57956 5.68021 5.76216 5.82736 5.86909 6.02306 6.05188 6.11819 6.26931 6.53421 6.58268 6.63682 6.67783 6.89136 7.14788 7.22814 7.29246 7.44434 7.50087 7.71402 7.98223 8.73343 9.32390 10.79878 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.009325 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.220072 B = 3001.881149 C = 4945.324331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.978 5.978 4 C 0.237 3.763 5 C -0.534 4.534 6 H 0.068 0.932 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.875 3.125 10 H -0.260 1.260 11 H -0.289 1.289 12 H -0.274 1.274 13 S 2.699 3.301 14 O -0.976 6.976 15 O -0.951 6.951 16 C -0.647 4.647 17 C -0.082 4.082 18 S 0.084 5.916 19 C -0.138 4.138 20 C -0.114 4.114 21 C -0.095 4.095 22 C -0.131 4.131 23 C -0.022 4.022 24 C -0.032 4.032 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.181 0.819 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -4.055 -7.934 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.818 5.818 4 C 0.115 3.885 5 C -0.573 4.573 6 H 0.086 0.914 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.703 3.297 10 H -0.185 1.185 11 H -0.215 1.215 12 H -0.199 1.199 13 S 2.785 3.215 14 O -0.966 6.966 15 O -0.941 6.941 16 C -0.745 4.745 17 C -0.219 4.219 18 S 0.349 5.651 19 C -0.253 4.253 20 C -0.137 4.137 21 C -0.115 4.115 22 C -0.151 4.151 23 C -0.042 4.042 24 C -0.038 4.038 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.198 0.802 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.571 -4.210 -9.291 11.177 hybrid contribution 0.782 -0.080 1.705 1.878 sum 5.353 -4.290 -7.586 10.227 Atomic orbital electron populations 1.22209 0.96601 1.01572 1.02535 1.21046 0.93803 0.82446 1.02504 1.57373 1.77842 1.23313 1.23305 1.19367 0.97623 0.92457 0.79011 1.21641 1.01897 1.27906 1.05835 0.91426 1.24879 0.97219 0.94765 0.96530 1.69929 1.35749 1.28987 1.16965 0.86933 0.84776 0.79733 0.78293 1.18508 1.21485 1.19851 1.01817 0.73011 0.73857 0.72770 1.93508 1.69528 1.75937 1.57660 1.93564 1.85733 1.29731 1.85097 1.31164 1.26761 1.12127 1.04450 1.25052 0.99071 0.98197 0.99601 1.83733 1.01730 1.54088 1.25597 1.22611 0.97509 1.05011 1.00158 1.20171 0.95506 1.01438 0.96601 1.21022 0.97845 0.97212 0.95454 1.20759 0.91899 1.01988 1.00451 1.21549 1.01740 0.91791 0.89076 1.18412 0.88946 1.00251 0.96226 0.91949 0.92491 0.92188 0.91682 0.89914 0.92748 0.93508 0.92299 0.80200 0.86351 0.86004 0.85308 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.13 2.14 6.06 -4.04 -0.02 2.11 16 3 N -0.98 -19.29 2.77 -115.66 -0.32 -19.61 16 4 C 0.24 5.41 4.87 -5.19 -0.03 5.38 16 5 C -0.53 -12.77 5.40 -34.44 -0.19 -12.95 16 6 H 0.07 1.64 6.93 -52.48 -0.36 1.28 16 7 C 0.07 1.75 5.06 -17.82 -0.09 1.66 16 8 N -0.88 -22.94 13.29 55.43 0.74 -22.20 16 9 Si 0.88 19.36 27.21 -169.99 -4.63 14.73 16 10 H -0.26 -5.31 5.44 56.52 0.31 -5.00 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 S 2.70 53.49 5.46 -107.50 -0.59 52.91 16 14 O -0.98 -19.03 16.27 -57.17 -0.93 -19.96 16 15 O -0.95 -21.46 15.87 -57.17 -0.91 -22.37 16 16 C -0.65 -12.16 5.99 -38.63 -0.23 -12.40 16 17 C -0.08 -1.31 10.48 28.84 0.30 -1.01 16 18 S 0.08 1.25 23.23 -107.50 -2.50 -1.25 16 19 C -0.14 -2.46 6.48 -38.41 -0.25 -2.71 16 20 C -0.11 -1.86 10.07 -39.26 -0.40 -2.26 16 21 C -0.09 -1.58 10.03 -39.64 -0.40 -1.97 16 22 C -0.13 -2.53 7.25 -40.13 -0.29 -2.82 16 23 C -0.02 -0.47 6.25 -39.24 -0.25 -0.71 16 24 C -0.03 -0.63 5.75 -105.37 -0.61 -1.24 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.97 7.61 -51.93 -0.40 0.58 16 29 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 30 H 0.05 1.35 6.31 -51.93 -0.33 1.02 16 31 H 0.05 1.10 8.11 -51.93 -0.42 0.68 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.34 16 33 H 0.18 2.37 7.72 -52.48 -0.41 1.96 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.13 2.45 6.65 -52.48 -0.35 2.10 16 37 H 0.17 3.84 4.26 -52.49 -0.22 3.61 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -28.15 322.25 -10.58 -38.73 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.25 Total: 5.25 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -2.06 Total: -31.08 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.42 Total: -41.82 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.84 Total: -42.34 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.63 Total: 14.73 kcal Atomic # 16 Polarization: 54.74 SS G_CDS: -3.08 Total: 51.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.15 -10.58 -38.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285030506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.315 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds