Wall clock time and date at job start Sat Apr 11 2020 01:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47250 * 89.99260 * 9 7 5 11 11 H 1.48497 * 109.47067 * 209.99831 * 9 7 5 12 12 H 1.48502 * 109.46618 * 329.99589 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 C 1.76207 * 107.21624 * 269.72430 * 13 3 2 17 17 C 1.31817 * 122.55589 * 114.71530 * 16 13 3 18 18 S 1.75301 * 111.40587 * 179.86089 * 17 16 13 19 19 C 1.75901 * 92.18924 * 0.34029 * 18 17 16 20 20 C 1.39853 * 130.56255 * 179.81876 * 19 18 17 21 21 C 1.37464 * 120.17763 * 179.97438 * 20 19 18 22 22 C 1.38850 * 120.18999 * 0.02562 * 21 20 19 23 23 C 1.36093 * 120.59384 * 0.02562 * 22 21 20 24 24 C 1.39746 * 109.68380 * 359.81483 * 19 18 17 25 25 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 26 26 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 27 27 H 1.08991 * 109.47557 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 29 29 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 30 30 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 31 31 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 32 32 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 33 33 H 1.08009 * 124.29845 * 359.97438 * 17 16 13 34 34 H 1.07997 * 119.91344 * 0.02562 * 20 19 18 35 35 H 1.08006 * 119.90897 * 179.97438 * 21 20 19 36 36 H 1.08009 * 119.70712 * 179.97438 * 22 21 20 37 37 H 1.07991 * 119.77555 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.5225 2.9383 3.3705 11 1 5.4039 2.0494 5.3299 12 1 5.9193 0.5913 3.4620 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 6 4.1112 1.8034 -1.7368 17 6 4.5245 1.0792 -2.7577 18 16 6.2727 0.9529 -2.7863 19 6 6.4344 1.9270 -1.3306 20 6 7.5744 2.3288 -0.6271 21 6 7.4522 3.1017 0.5030 22 6 6.1965 3.4876 0.9528 23 6 5.0741 3.1068 0.2839 24 6 5.1693 2.3140 -0.8803 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0923 3.1802 1.0756 31 1 1.3617 1.8097 1.9453 32 1 3.2794 3.5880 4.5379 33 1 3.8694 0.6232 -3.4853 34 1 8.5533 2.0316 -0.9731 35 1 8.3355 3.4092 1.0432 36 1 6.1096 4.0946 1.8419 37 1 4.1041 3.4148 0.6452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285030506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:23:18 Heat of formation + Delta-G solvation = -37.817962 kcal Electronic energy + Delta-G solvation = -24470.681864 eV Core-core repulsion = 21045.049684 eV Total energy + Delta-G solvation = -3425.632180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46709 -38.36174 -37.76373 -36.94972 -36.30034 -34.78427 -31.98430 -31.46256 -30.41390 -28.50973 -25.22483 -24.92820 -23.68846 -23.28179 -22.36470 -19.64952 -19.29321 -18.58344 -18.27017 -17.80167 -17.27330 -16.56029 -16.47706 -16.15377 -15.69138 -15.46696 -14.90954 -14.73303 -14.62470 -14.60566 -13.86572 -13.76123 -13.62744 -13.33761 -13.30554 -13.18028 -13.03788 -12.84845 -12.72167 -12.55712 -12.30208 -12.20314 -12.09983 -11.84622 -11.68932 -11.58313 -11.53801 -10.67192 -10.48361 -9.79720 -9.52043 -8.84688 -8.15422 -6.18719 -0.65196 -0.43883 0.30789 0.46734 0.78510 0.85258 1.40825 1.45545 1.51652 2.05785 2.44224 2.70898 2.83460 3.19240 3.31015 3.62450 3.94866 3.97713 4.08776 4.28411 4.40399 4.47170 4.48187 4.53379 4.67866 4.72066 4.77780 5.00859 5.15894 5.17203 5.24366 5.32230 5.42595 5.47038 5.52671 5.74514 5.76985 5.92075 6.00332 6.10589 6.82939 7.41979 8.91712 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.009325 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.220072 B = 3001.881149 C = 4945.324331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.983 5.983 4 C 0.254 3.746 5 C -0.521 4.521 6 H 0.063 0.937 7 C 0.033 3.967 8 N -0.918 5.918 9 Si 0.918 3.082 10 H -0.235 1.235 11 H -0.296 1.296 12 H -0.278 1.278 13 S 2.708 3.292 14 O -0.975 6.975 15 O -0.990 6.990 16 C -0.678 4.678 17 C -0.073 4.073 18 S 0.172 5.828 19 C -0.167 4.167 20 C -0.102 4.102 21 C -0.098 4.098 22 C -0.141 4.141 23 C -0.053 4.053 24 C -0.050 4.050 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.209 0.791 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.121 0.879 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -6.122 -9.911 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.007 4.007 3 N -0.823 5.823 4 C 0.130 3.870 5 C -0.560 4.560 6 H 0.082 0.918 7 C -0.168 4.168 8 N -0.557 5.557 9 Si 0.744 3.256 10 H -0.159 1.159 11 H -0.222 1.222 12 H -0.203 1.203 13 S 2.798 3.202 14 O -0.966 6.966 15 O -0.981 6.981 16 C -0.780 4.780 17 C -0.210 4.210 18 S 0.437 5.563 19 C -0.282 4.282 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.161 4.161 23 C -0.073 4.073 24 C -0.057 4.057 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.226 0.774 34 H 0.176 0.824 35 H 0.174 0.826 36 H 0.139 0.861 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.309 -6.283 -11.287 14.842 hybrid contribution 0.007 0.494 2.116 2.173 sum 7.316 -5.789 -9.172 13.083 Atomic orbital electron populations 1.22197 0.95344 1.03438 1.01648 1.21334 0.94978 0.80899 1.03493 1.57281 1.78574 1.24366 1.22059 1.18926 0.96857 0.91199 0.79976 1.21631 1.01875 1.26991 1.05459 0.91839 1.25426 0.99637 0.94690 0.97056 1.70031 1.37450 1.30717 1.17489 0.86262 0.82626 0.79684 0.77034 1.15855 1.22239 1.20329 1.01228 0.73572 0.72930 0.72498 1.93491 1.70159 1.75613 1.57331 1.93512 1.86722 1.32275 1.85568 1.30789 1.25394 1.15284 1.06490 1.25585 1.01275 0.95777 0.98391 1.83437 0.99082 1.51395 1.22380 1.23090 0.97159 1.05861 1.02063 1.20666 0.96674 0.99542 0.95518 1.21373 0.97643 0.96883 0.95938 1.20846 0.92883 1.02103 1.00261 1.21335 1.01006 0.93962 0.91015 1.18538 0.90471 1.00499 0.96204 0.93113 0.93096 0.88922 0.89510 0.90012 0.95667 0.95099 0.92511 0.77371 0.82421 0.82571 0.86101 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.91 10.24 71.98 0.74 -4.17 16 2 C 0.12 3.89 6.06 86.38 0.52 4.42 16 3 N -0.98 -39.96 2.77 -519.85 -1.44 -41.39 16 4 C 0.25 12.26 4.87 85.63 0.42 12.68 16 5 C -0.52 -25.83 5.40 25.60 0.14 -25.69 16 6 H 0.06 3.16 6.93 -2.91 -0.02 3.14 16 7 C 0.03 1.67 5.06 84.65 0.43 2.10 16 8 N -0.92 -50.21 13.29 21.45 0.28 -49.92 16 9 Si 0.92 39.99 27.21 68.60 1.87 41.86 16 10 H -0.23 -9.16 5.44 99.48 0.54 -8.61 16 11 H -0.30 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 S 2.71 109.27 5.46 -56.49 -0.31 108.96 16 14 O -0.98 -37.38 16.27 -128.00 -2.08 -39.47 16 15 O -0.99 -47.25 15.87 -128.00 -2.03 -49.28 16 16 C -0.68 -24.87 5.99 23.33 0.14 -24.73 16 17 C -0.07 -2.10 10.48 67.04 0.70 -1.39 16 18 S 0.17 4.31 23.23 -56.49 -1.31 2.99 16 19 C -0.17 -5.44 6.48 23.03 0.15 -5.29 16 20 C -0.10 -2.90 10.07 22.48 0.23 -2.68 16 21 C -0.10 -2.98 10.03 22.23 0.22 -2.75 16 22 C -0.14 -5.40 7.25 21.92 0.16 -5.24 16 23 C -0.05 -2.30 6.25 22.49 0.14 -2.16 16 24 C -0.05 -1.98 5.75 -20.35 -0.12 -2.10 16 25 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 2.46 7.61 -2.39 -0.02 2.44 16 29 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 30 H 0.03 1.37 6.31 -2.39 -0.02 1.35 16 31 H 0.03 1.56 8.11 -2.39 -0.02 1.54 16 32 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 33 H 0.21 4.64 7.72 -2.91 -0.02 4.62 16 34 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 35 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.12 4.65 6.65 -2.91 -0.02 4.63 16 37 H 0.13 6.54 4.26 -2.92 -0.01 6.52 16 Total: -1.00 -63.64 322.25 -0.22 -63.86 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.93 Total: 19.40 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 3.87 Total: -57.01 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -1.15 Total: -91.32 kcal Atomic # 8 Polarization: -84.63 SS G_CDS: -4.11 Total: -88.75 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.87 Total: 41.86 kcal Atomic # 16 Polarization: 113.57 SS G_CDS: -1.62 Total: 111.95 kcal Total: -63.64 -0.22 -63.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285030506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.042 kcal (2) G-P(sol) polarization free energy of solvation -63.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds