Wall clock time and date at job start Sat Apr 11 2020 01:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47288 * 2 1 4 4 C 1.50705 * 109.47390 * 240.00474 * 2 1 3 5 5 H 1.08003 * 119.99628 * 274.42908 * 4 2 1 6 6 C 1.37875 * 120.00157 * 94.42315 * 4 2 1 7 7 N 1.31515 * 119.99988 * 174.77020 * 6 4 2 8 8 Si 1.86800 * 120.00002 * 354.77485 * 6 4 2 9 9 H 1.48506 * 109.47151 * 94.38951 * 8 6 4 10 10 H 1.48495 * 109.47331 * 214.38857 * 8 6 4 11 11 H 1.48504 * 109.47160 * 334.39283 * 8 6 4 12 12 N 1.46495 * 109.47204 * 120.00316 * 2 1 3 13 13 C 1.46500 * 120.00105 * 58.83737 * 12 2 1 14 14 S 1.65606 * 119.99884 * 238.83915 * 12 2 1 15 15 O 1.42105 * 106.39992 * 210.30981 * 14 12 2 16 16 O 1.42096 * 106.40401 * 343.22730 * 14 12 2 17 17 C 1.76195 * 107.21659 * 96.77182 * 14 12 2 18 18 C 1.31826 * 122.55119 * 113.74586 * 17 14 12 19 19 S 1.75311 * 111.39748 * 179.85612 * 18 17 14 20 20 C 1.75903 * 92.19219 * 0.34156 * 19 18 17 21 21 C 1.39858 * 130.56184 * 179.81146 * 20 19 18 22 22 C 1.37462 * 120.17728 * 180.02562 * 21 20 19 23 23 C 1.38847 * 120.18659 * 359.97438 * 22 21 20 24 24 C 1.36092 * 120.59366 * 0.02562 * 23 22 21 25 25 C 1.39740 * 109.68257 * 359.81384 * 20 19 18 26 26 H 1.08994 * 109.47011 * 293.81935 * 1 2 3 27 27 H 1.09006 * 109.46602 * 173.82271 * 1 2 3 28 28 H 1.09001 * 109.47097 * 53.82816 * 1 2 3 29 29 H 0.96997 * 119.99765 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.46930 * 90.00098 * 13 12 2 31 31 H 1.09004 * 109.46985 * 209.99847 * 13 12 2 32 32 H 1.08998 * 109.47209 * 330.00052 * 13 12 2 33 33 H 1.07993 * 124.30112 * 359.97438 * 18 17 14 34 34 H 1.08003 * 119.91095 * 0.02562 * 21 20 19 35 35 H 1.07995 * 119.90090 * 179.97438 * 22 21 20 36 36 H 1.08010 * 119.70100 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.77004 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1443 -1.7845 -1.2261 6 6 2.3491 0.0111 -2.3620 7 7 2.8839 -0.5945 -3.3997 8 14 2.0186 1.8487 -2.4210 9 1 3.2450 2.5853 -2.0228 10 1 1.6334 2.2383 -3.8012 11 1 0.9146 2.1834 -1.4858 12 7 2.0184 -0.6906 1.1961 13 6 1.6436 -2.0856 1.4408 14 16 2.9940 0.1055 2.2716 15 8 3.8382 -0.8791 2.8524 16 8 3.4894 1.2510 1.5921 17 6 1.9618 0.7036 3.5682 18 6 2.0455 0.2558 4.8052 19 16 0.8883 1.0527 5.8537 20 6 0.2624 2.0304 4.5321 21 6 -0.7510 2.9941 4.5145 22 6 -1.0717 3.6384 3.3433 23 6 -0.3910 3.3363 2.1714 24 6 0.5984 2.4019 2.1663 25 6 0.9490 1.7244 3.3541 26 1 -0.3633 0.4150 0.9401 27 1 -0.3633 -1.0218 -0.1106 28 1 -0.3633 0.6065 -0.8296 29 1 3.1070 -0.0868 -4.1956 30 1 2.3798 -2.7455 0.9817 31 1 1.6101 -2.2698 2.5147 32 1 0.6621 -2.2794 1.0082 33 1 2.7400 -0.5040 5.1317 34 1 -1.2830 3.2328 5.4236 35 1 -1.8552 4.3815 3.3348 36 1 -0.6497 3.8470 1.2555 37 1 1.1189 2.1771 1.2471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285074884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:23:23 Heat of formation + Delta-G solvation = -18.066110 kcal Electronic energy + Delta-G solvation = -24129.193084 eV Core-core repulsion = 20704.417408 eV Total energy + Delta-G solvation = -3424.775676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.59719 -36.85425 -36.38760 -35.47104 -35.26175 -32.51964 -31.15691 -30.00128 -29.52576 -25.83150 -25.18501 -24.19591 -22.89567 -21.49662 -20.54039 -18.53396 -18.09143 -17.34954 -16.90369 -16.37815 -15.88917 -15.46254 -15.24127 -14.72884 -14.46973 -13.97394 -13.84544 -13.55777 -13.28290 -12.88322 -12.68157 -12.54327 -12.23755 -12.02855 -11.90550 -11.79236 -11.62231 -11.57812 -11.47240 -11.25513 -10.93662 -10.84079 -10.60497 -10.50159 -10.39796 -9.93007 -9.77981 -9.34715 -8.70430 -8.68458 -8.13055 -8.03913 -6.21315 -4.20602 0.41502 0.72216 1.12711 1.36652 1.71781 1.79210 3.23760 3.30027 3.37618 3.48875 3.64878 4.21576 4.32885 4.34712 4.67898 4.80537 4.91672 5.10510 5.12727 5.27812 5.35841 5.48433 5.56300 5.57600 5.88796 5.98692 6.10645 6.17129 6.23393 6.31755 6.36236 6.43878 6.51072 6.53909 6.74707 6.87387 7.16043 7.43290 7.58256 8.38852 8.85042 9.39816 10.90496 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.006129 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.834819 B = 4567.389885 C = 5625.201096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.232 3.768 3 H 0.060 0.940 4 C -0.515 4.515 5 H 0.084 0.916 6 C 0.079 3.921 7 N -0.884 5.884 8 Si 0.860 3.140 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.258 1.258 12 N -0.969 5.969 13 C 0.106 3.894 14 S 2.681 3.319 15 O -0.967 6.967 16 O -0.948 6.948 17 C -0.664 4.664 18 C -0.068 4.068 19 S 0.105 5.895 20 C -0.146 4.146 21 C -0.085 4.085 22 C -0.103 4.103 23 C -0.109 4.109 24 C -0.082 4.082 25 C -0.015 4.015 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.267 0.733 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.187 0.813 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 5.071 16.299 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.129 3.871 3 H 0.078 0.922 4 C -0.556 4.556 5 H 0.102 0.898 6 C -0.126 4.126 7 N -0.520 5.520 8 Si 0.686 3.314 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.182 1.182 12 N -0.810 5.810 13 C -0.040 4.040 14 S 2.768 3.232 15 O -0.957 6.957 16 O -0.938 6.938 17 C -0.760 4.760 18 C -0.205 4.205 19 S 0.370 5.630 20 C -0.261 4.261 21 C -0.108 4.108 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.102 4.102 25 C -0.022 4.022 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.204 0.796 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.920 5.054 17.704 20.043 hybrid contribution -0.405 1.090 -1.198 1.669 sum -8.324 6.144 16.507 19.481 Atomic orbital electron populations 1.22385 0.98220 1.01585 0.99326 1.19194 0.91244 0.93381 0.83244 0.92228 1.21140 1.44117 0.96201 0.94092 0.89831 1.24986 0.93583 0.98323 0.95698 1.69893 1.40296 1.36729 1.05122 0.87108 0.80186 0.86302 0.77789 1.19183 1.20894 1.18198 1.57683 1.69407 1.20345 1.33536 1.21241 1.01893 0.81895 0.98968 1.02674 0.74122 0.73722 0.72654 1.93518 1.63305 1.59686 1.79229 1.93564 1.77340 1.50911 1.72005 1.31475 1.17902 1.10720 1.15927 1.25223 0.99754 1.00205 0.95291 1.83935 1.32634 1.35824 1.10593 1.22734 1.02965 1.03694 0.96719 1.20416 0.96082 0.95405 0.98867 1.21073 0.99703 0.99470 0.92102 1.20769 0.95730 0.97577 0.98754 1.21191 0.97080 0.94958 0.96963 1.18448 0.94304 0.95638 0.93856 0.95052 0.92566 0.92419 0.92252 0.92225 0.93180 0.90820 0.79606 0.85524 0.85024 0.84888 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.43 37.16 0.31 -2.67 16 2 C 0.23 5.20 1.61 -69.08 -0.11 5.09 16 3 H 0.06 1.40 2.66 -51.93 -0.14 1.26 16 4 C -0.51 -13.66 8.83 -34.44 -0.30 -13.96 16 5 H 0.08 2.37 7.70 -52.48 -0.40 1.96 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 7 N -0.88 -25.97 13.96 55.43 0.77 -25.20 16 8 Si 0.86 20.66 26.57 -169.99 -4.52 16.14 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -5.57 5.91 56.52 0.33 -5.23 16 12 N -0.97 -19.54 3.06 -115.85 -0.35 -19.89 16 13 C 0.11 1.81 9.45 59.85 0.57 2.37 16 14 S 2.68 53.43 5.44 -107.50 -0.59 52.85 16 15 O -0.97 -19.85 16.62 -57.17 -0.95 -20.80 16 16 O -0.95 -21.81 15.63 -57.17 -0.89 -22.70 16 17 C -0.66 -11.02 6.00 -38.63 -0.23 -11.25 16 18 C -0.07 -0.93 10.48 28.84 0.30 -0.63 16 19 S 0.11 1.24 23.23 -107.50 -2.50 -1.26 16 20 C -0.15 -2.03 6.48 -38.41 -0.25 -2.28 16 21 C -0.09 -0.99 10.07 -39.26 -0.40 -1.38 16 22 C -0.10 -1.13 10.03 -39.64 -0.40 -1.53 16 23 C -0.11 -1.44 9.95 -40.13 -0.40 -1.84 16 24 C -0.08 -1.36 8.04 -39.24 -0.32 -1.67 16 25 C -0.02 -0.25 6.01 -105.38 -0.63 -0.88 16 26 H 0.03 0.53 6.51 -51.93 -0.34 0.19 16 27 H 0.06 1.03 6.90 -51.93 -0.36 0.67 16 28 H 0.06 1.11 6.86 -51.93 -0.36 0.75 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.70 7.96 -51.93 -0.41 0.29 16 32 H 0.07 1.16 6.50 -51.93 -0.34 0.82 16 33 H 0.19 2.13 7.72 -52.49 -0.41 1.73 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.14 2.56 4.61 -52.49 -0.24 2.32 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -32.22 323.52 -9.99 -42.21 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -3.89 Total: 2.31 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: -1.95 Total: -28.55 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.42 Total: -45.09 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.84 Total: -43.50 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.52 Total: 16.14 kcal Atomic # 16 Polarization: 54.67 SS G_CDS: -3.08 Total: 51.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.22 -9.99 -42.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285074884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.145 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds