Wall clock time and date at job start Sat Apr 11 2020 01:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47288 * 2 1 4 4 C 1.50705 * 109.47390 * 240.00474 * 2 1 3 5 5 H 1.08003 * 119.99628 * 274.42908 * 4 2 1 6 6 C 1.37875 * 120.00157 * 94.42315 * 4 2 1 7 7 N 1.31515 * 119.99988 * 174.77020 * 6 4 2 8 8 Si 1.86800 * 120.00002 * 354.77485 * 6 4 2 9 9 H 1.48506 * 109.47151 * 94.38951 * 8 6 4 10 10 H 1.48495 * 109.47331 * 214.38857 * 8 6 4 11 11 H 1.48504 * 109.47160 * 334.39283 * 8 6 4 12 12 N 1.46495 * 109.47204 * 120.00316 * 2 1 3 13 13 C 1.46500 * 120.00105 * 58.83737 * 12 2 1 14 14 S 1.65606 * 119.99884 * 238.83915 * 12 2 1 15 15 O 1.42105 * 106.39992 * 210.30981 * 14 12 2 16 16 O 1.42096 * 106.40401 * 343.22730 * 14 12 2 17 17 C 1.76195 * 107.21659 * 96.77182 * 14 12 2 18 18 C 1.31826 * 122.55119 * 113.74586 * 17 14 12 19 19 S 1.75311 * 111.39748 * 179.85612 * 18 17 14 20 20 C 1.75903 * 92.19219 * 0.34156 * 19 18 17 21 21 C 1.39858 * 130.56184 * 179.81146 * 20 19 18 22 22 C 1.37462 * 120.17728 * 180.02562 * 21 20 19 23 23 C 1.38847 * 120.18659 * 359.97438 * 22 21 20 24 24 C 1.36092 * 120.59366 * 0.02562 * 23 22 21 25 25 C 1.39740 * 109.68257 * 359.81384 * 20 19 18 26 26 H 1.08994 * 109.47011 * 293.81935 * 1 2 3 27 27 H 1.09006 * 109.46602 * 173.82271 * 1 2 3 28 28 H 1.09001 * 109.47097 * 53.82816 * 1 2 3 29 29 H 0.96997 * 119.99765 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.46930 * 90.00098 * 13 12 2 31 31 H 1.09004 * 109.46985 * 209.99847 * 13 12 2 32 32 H 1.08998 * 109.47209 * 330.00052 * 13 12 2 33 33 H 1.07993 * 124.30112 * 359.97438 * 18 17 14 34 34 H 1.08003 * 119.91095 * 0.02562 * 21 20 19 35 35 H 1.07995 * 119.90090 * 179.97438 * 22 21 20 36 36 H 1.08010 * 119.70100 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.77004 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1443 -1.7845 -1.2261 6 6 2.3491 0.0111 -2.3620 7 7 2.8839 -0.5945 -3.3997 8 14 2.0186 1.8487 -2.4210 9 1 3.2450 2.5853 -2.0228 10 1 1.6334 2.2383 -3.8012 11 1 0.9146 2.1834 -1.4858 12 7 2.0184 -0.6906 1.1961 13 6 1.6436 -2.0856 1.4408 14 16 2.9940 0.1055 2.2716 15 8 3.8382 -0.8791 2.8524 16 8 3.4894 1.2510 1.5921 17 6 1.9618 0.7036 3.5682 18 6 2.0455 0.2558 4.8052 19 16 0.8883 1.0527 5.8537 20 6 0.2624 2.0304 4.5321 21 6 -0.7510 2.9941 4.5145 22 6 -1.0717 3.6384 3.3433 23 6 -0.3910 3.3363 2.1714 24 6 0.5984 2.4019 2.1663 25 6 0.9490 1.7244 3.3541 26 1 -0.3633 0.4150 0.9401 27 1 -0.3633 -1.0218 -0.1106 28 1 -0.3633 0.6065 -0.8296 29 1 3.1070 -0.0868 -4.1956 30 1 2.3798 -2.7455 0.9817 31 1 1.6101 -2.2698 2.5147 32 1 0.6621 -2.2794 1.0082 33 1 2.7400 -0.5040 5.1317 34 1 -1.2830 3.2328 5.4236 35 1 -1.8552 4.3815 3.3348 36 1 -0.6497 3.8470 1.2555 37 1 1.1189 2.1771 1.2471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285074884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:23:22 Heat of formation + Delta-G solvation = -40.381297 kcal Electronic energy + Delta-G solvation = -24130.160743 eV Core-core repulsion = 20704.417408 eV Total energy + Delta-G solvation = -3425.743335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58623 -38.48703 -38.03740 -37.00759 -36.41461 -34.53131 -32.18403 -31.62917 -30.53584 -27.40179 -27.01757 -25.30299 -23.87667 -22.75978 -22.14734 -19.74181 -19.61390 -19.02826 -18.32826 -17.93859 -17.26564 -16.67077 -16.37830 -16.16522 -15.75878 -15.46647 -15.00327 -14.87080 -14.72191 -14.47808 -14.32269 -13.96607 -13.54825 -13.47492 -13.29821 -13.23274 -13.14373 -13.06115 -12.77536 -12.65619 -12.55663 -12.31533 -12.11309 -11.87229 -11.76939 -11.69420 -11.23769 -10.86449 -10.78935 -9.74781 -9.67427 -9.00553 -8.33401 -6.36546 -0.79630 -0.57693 0.14304 0.37701 0.66578 0.72449 1.29741 1.38820 1.41633 2.01644 2.32238 2.61856 2.74584 3.03941 3.18591 3.50103 3.77891 3.97025 3.98324 4.19531 4.26120 4.36763 4.44702 4.50577 4.64787 4.68333 4.78232 4.83558 4.90248 4.96107 5.08206 5.12973 5.28992 5.31567 5.47868 5.51355 5.58803 5.83923 5.89627 6.31223 6.69948 7.28453 8.82370 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.006129 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.834819 B = 4567.389885 C = 5625.201096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.237 3.763 3 H 0.050 0.950 4 C -0.518 4.518 5 H 0.051 0.949 6 C 0.023 3.977 7 N -0.936 5.936 8 Si 0.905 3.095 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.221 1.221 12 N -0.981 5.981 13 C 0.099 3.901 14 S 2.692 3.308 15 O -0.984 6.984 16 O -0.991 6.991 17 C -0.683 4.683 18 C -0.067 4.067 19 S 0.189 5.811 20 C -0.169 4.169 21 C -0.078 4.078 22 C -0.095 4.095 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.040 4.040 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.268 0.732 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.205 0.795 34 H 0.163 0.837 35 H 0.172 0.828 36 H 0.149 0.851 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 6.891 20.107 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.133 3.867 3 H 0.068 0.932 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.177 4.177 7 N -0.576 5.576 8 Si 0.728 3.272 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.143 1.143 12 N -0.821 5.821 13 C -0.046 4.046 14 S 2.784 3.216 15 O -0.974 6.974 16 O -0.981 6.981 17 C -0.786 4.786 18 C -0.205 4.205 19 S 0.455 5.545 20 C -0.285 4.285 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.047 4.047 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.222 0.778 34 H 0.180 0.820 35 H 0.190 0.810 36 H 0.166 0.834 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.972 6.840 21.471 25.063 hybrid contribution 0.515 0.496 -2.082 2.202 sum -10.457 7.336 19.389 23.218 Atomic orbital electron populations 1.22230 0.95479 1.02219 1.00670 1.19005 0.93165 0.92350 0.82196 0.93215 1.21423 1.43305 0.95055 0.96037 0.93083 1.25747 0.93843 1.02563 0.95525 1.70021 1.43076 1.38418 1.06041 0.86382 0.80648 0.81214 0.78969 1.20884 1.19907 1.14284 1.57359 1.69361 1.21612 1.33781 1.21437 1.01922 0.80087 1.01152 1.01674 0.74056 0.72855 0.73011 1.93487 1.64393 1.60154 1.79391 1.93507 1.78766 1.52131 1.73700 1.30695 1.19377 1.13228 1.15303 1.25652 0.99975 0.99770 0.95089 1.83663 1.29757 1.33353 1.07770 1.23135 1.03667 1.04882 0.96811 1.20922 0.94864 0.93792 1.00446 1.21517 0.99669 0.99484 0.90866 1.21084 0.94665 0.96353 1.00581 1.21142 0.99120 0.97563 0.96303 1.18518 0.94995 0.96180 0.94964 0.92504 0.91996 0.92456 0.92330 0.93946 0.89837 0.89578 0.77813 0.81963 0.81045 0.83360 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 8.43 71.98 0.61 -4.91 16 2 C 0.24 10.80 1.61 44.25 0.07 10.88 16 3 H 0.05 2.40 2.66 -2.39 -0.01 2.39 16 4 C -0.52 -28.74 8.83 25.60 0.23 -28.52 16 5 H 0.05 3.08 7.70 -2.91 -0.02 3.05 16 6 C 0.02 1.32 5.47 84.65 0.46 1.78 16 7 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 8 Si 0.90 43.53 26.57 68.60 1.82 45.35 16 9 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.22 -9.16 5.91 99.48 0.59 -8.57 16 12 N -0.98 -40.25 3.06 -520.43 -1.59 -41.84 16 13 C 0.10 3.39 9.45 127.77 1.21 4.60 16 14 S 2.69 109.04 5.44 -56.49 -0.31 108.74 16 15 O -0.98 -40.85 16.62 -128.00 -2.13 -42.98 16 16 O -0.99 -47.46 15.63 -128.00 -2.00 -49.46 16 17 C -0.68 -21.78 6.00 23.33 0.14 -21.64 16 18 C -0.07 -1.66 10.48 67.03 0.70 -0.96 16 19 S 0.19 3.60 23.23 -56.49 -1.31 2.29 16 20 C -0.17 -4.05 6.48 23.03 0.15 -3.90 16 21 C -0.08 -1.40 10.07 22.48 0.23 -1.18 16 22 C -0.09 -1.63 10.03 22.23 0.22 -1.40 16 23 C -0.11 -2.54 9.95 21.92 0.22 -2.32 16 24 C -0.12 -3.84 8.04 22.49 0.18 -3.66 16 25 C -0.04 -1.22 6.01 -20.36 -0.12 -1.34 16 26 H 0.06 1.85 6.51 -2.39 -0.02 1.84 16 27 H 0.06 2.22 6.90 -2.38 -0.02 2.20 16 28 H 0.06 2.13 6.86 -2.39 -0.02 2.12 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.08 2.25 7.96 -2.38 -0.02 2.23 16 32 H 0.09 2.69 6.50 -2.39 -0.02 2.67 16 33 H 0.20 4.11 7.72 -2.91 -0.02 4.08 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.11 4.07 4.61 -2.91 -0.01 4.05 16 Total: -1.00 -75.16 323.52 0.07 -75.09 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.99 Total: 13.03 kcal Atomic # 6 Polarization: -56.87 SS G_CDS: 4.29 Total: -52.57 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -1.29 Total: -99.49 kcal Atomic # 8 Polarization: -88.31 SS G_CDS: -4.13 Total: -92.44 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.82 Total: 45.35 kcal Atomic # 16 Polarization: 112.65 SS G_CDS: -1.62 Total: 111.03 kcal Total: -75.16 0.07 -75.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285074884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.711 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds