Wall clock time and date at job start Sat Apr 11 2020 01:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86793 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47161 * 273.60657 * 3 2 1 5 5 H 1.48496 * 109.47413 * 33.60478 * 3 2 1 6 6 H 1.48502 * 109.47470 * 153.60683 * 3 2 1 7 7 C 1.38952 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00121 * 341.27308 * 7 2 1 9 9 N 1.37097 * 119.99604 * 161.27231 * 7 2 1 10 10 C 1.34778 * 120.00179 * 320.26144 * 9 7 2 11 11 O 1.21295 * 120.00095 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00233 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47443 * 179.97438 * 12 10 9 14 14 S 1.81400 * 109.47369 * 180.02562 * 13 12 10 15 15 C 1.76194 * 102.99965 * 180.02562 * 14 13 12 16 16 C 1.39003 * 120.07373 * 359.72469 * 15 14 13 17 17 C 1.38072 * 119.94482 * 179.71990 * 16 15 14 18 18 C 1.38312 * 120.09111 * 0.55290 * 17 16 15 19 19 C 1.38404 * 120.14692 * 359.72474 * 18 17 16 20 20 Cl 1.73592 * 119.97215 * 180.02562 * 19 18 17 21 21 C 1.38220 * 120.05251 * 359.97438 * 19 18 17 22 22 C 1.46507 * 120.00072 * 140.26047 * 9 7 2 23 23 C 1.52997 * 117.49485 * 2.39928 * 22 9 7 24 24 C 1.52998 * 117.49921 * 293.73776 * 22 9 7 25 25 H 0.97004 * 120.00160 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47145 * 59.99557 * 12 10 9 27 27 H 1.09004 * 109.47310 * 300.00100 * 12 10 9 28 28 H 1.08999 * 109.46776 * 59.99848 * 13 12 10 29 29 H 1.09004 * 109.47017 * 300.00362 * 13 12 10 30 30 H 1.07999 * 120.03108 * 359.97438 * 16 15 14 31 31 H 1.08003 * 119.95565 * 180.25815 * 17 16 15 32 32 H 1.07997 * 119.92498 * 179.74401 * 18 17 16 33 33 H 1.08002 * 120.04275 * 180.02562 * 21 19 18 34 34 H 1.08997 * 115.54573 * 148.06520 * 22 9 7 35 35 H 1.08998 * 117.50020 * 359.97438 * 23 22 9 36 36 H 1.08998 * 117.49944 * 145.01914 * 23 22 9 37 37 H 1.08992 * 117.49847 * 214.97958 * 24 22 9 38 38 H 1.08997 * 117.49561 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4194 2.0904 -1.3973 5 1 1.4859 2.6294 0.7749 6 1 3.5817 1.4193 0.6224 7 6 2.0088 -1.2034 0.0005 8 1 1.5116 -2.1138 0.3012 9 7 3.3253 -1.2350 -0.3807 10 6 3.7444 -0.4850 -1.4191 11 8 2.9569 0.2182 -2.0162 12 6 5.1914 -0.5202 -1.8385 13 6 5.3993 0.4137 -3.0325 14 16 7.1409 0.3708 -3.5378 15 6 7.1862 1.4878 -4.8996 16 6 6.0247 2.1303 -5.3123 17 6 6.0643 3.0096 -6.3762 18 6 7.2557 3.2431 -7.0388 19 6 8.4133 2.6011 -6.6347 20 17 9.9062 2.8980 -7.4692 21 6 8.3818 1.7244 -5.5666 22 6 4.2767 -2.0840 0.3408 23 6 3.7288 -2.9538 1.4740 24 6 4.5819 -1.7243 1.7962 25 1 -0.4850 0.8401 -0.0004 26 1 5.4631 -1.5372 -2.1216 27 1 5.8184 -0.1944 -1.0085 28 1 5.1275 1.4307 -2.7498 29 1 4.7724 0.0875 -3.8624 30 1 5.0929 1.9451 -4.7988 31 1 5.1628 3.5121 -6.6944 32 1 7.2828 3.9283 -7.8732 33 1 9.2853 1.2238 -5.2511 34 1 5.0908 -2.4919 -0.2582 35 1 2.6607 -2.8941 1.6830 36 1 4.1829 -3.9338 1.6209 37 1 5.5967 -1.8958 2.1548 38 1 4.0752 -0.8557 2.2168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288252793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:23:32 Heat of formation + Delta-G solvation = 22.472782 kcal Electronic energy + Delta-G solvation = -22086.753845 eV Core-core repulsion = 18661.692361 eV Total energy + Delta-G solvation = -3425.061484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.33059 -39.29508 -36.72321 -36.60033 -33.28385 -32.52225 -31.47089 -31.37349 -30.89114 -26.10746 -23.86173 -23.08027 -22.60849 -21.93539 -21.35930 -19.25964 -18.07367 -17.37989 -16.55097 -16.25463 -15.74060 -15.63770 -15.13350 -14.91943 -14.52765 -14.04023 -13.93754 -13.77656 -13.59097 -13.19079 -12.94155 -12.53068 -12.07006 -12.04285 -11.97878 -11.75309 -11.56577 -11.32992 -11.23185 -11.12221 -10.79122 -10.40335 -10.27114 -10.08975 -10.05333 -9.94386 -9.68072 -9.08689 -8.65268 -8.56032 -7.60119 -7.56105 -6.25443 -4.02717 0.81161 0.94318 1.28856 1.89396 2.30015 3.18896 3.29008 3.41274 3.60088 3.71153 4.23953 4.41503 4.53158 4.57486 4.74674 4.86414 4.93733 5.04411 5.09184 5.11704 5.23663 5.37189 5.39818 5.48222 5.52644 5.64395 5.70938 5.84506 5.92381 5.93397 6.02011 6.08074 6.10785 6.23632 6.41622 6.59962 6.78501 7.75894 7.85380 8.67025 8.79029 9.34307 9.68371 10.78370 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.002929 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.565267 B = 9556.681350 C =10514.907711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.089 3.911 3 Si 0.920 3.080 4 H -0.251 1.251 5 H -0.313 1.313 6 H -0.283 1.283 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.430 5.430 10 C 0.449 3.551 11 O -0.543 6.543 12 C -0.119 4.119 13 C -0.085 4.085 14 S -0.113 6.113 15 C -0.066 4.066 16 C -0.128 4.128 17 C -0.085 4.085 18 C -0.121 4.121 19 C -0.018 4.018 20 Cl -0.070 7.070 21 C -0.096 4.096 22 C 0.060 3.940 23 C -0.172 4.172 24 C -0.198 4.198 25 H 0.273 0.727 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.097 2.570 -9.108 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.120 4.120 3 Si 0.752 3.248 4 H -0.177 1.177 5 H -0.244 1.244 6 H -0.209 1.209 7 C -0.475 4.475 8 H 0.116 0.884 9 N -0.149 5.149 10 C 0.238 3.762 11 O -0.427 6.427 12 C -0.160 4.160 13 C -0.233 4.233 14 S 0.134 5.866 15 C -0.180 4.180 16 C -0.152 4.152 17 C -0.105 4.105 18 C -0.143 4.143 19 C -0.046 4.046 20 Cl -0.042 7.042 21 C -0.121 4.121 22 C -0.045 4.045 23 C -0.209 4.209 24 C -0.237 4.237 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.491 2.280 -8.883 19.749 hybrid contribution -0.486 1.522 -0.481 1.668 sum 17.006 3.801 -9.363 19.782 Atomic orbital electron populations 1.69735 1.06878 1.28318 1.45020 1.25329 0.94991 0.99631 0.92070 0.86243 0.78708 0.81828 0.78030 1.17720 1.24359 1.20899 1.18801 0.83140 0.96098 1.49470 0.88424 1.43121 1.07879 1.38793 1.25150 1.19937 0.89040 0.85302 0.81960 1.90532 1.55467 1.41630 1.55040 1.21308 0.97333 1.00329 0.97073 1.23493 0.92772 1.04816 1.02245 1.85352 1.15111 1.52867 1.33299 1.21726 0.95868 1.00707 0.99678 1.21493 0.97790 0.97617 0.98328 1.21075 0.97681 0.97017 0.94714 1.21063 0.91200 1.00818 1.01223 1.20753 0.87741 1.00051 0.96080 1.98370 1.33151 1.95158 1.77475 1.20582 0.97484 0.98922 0.95118 1.21849 0.95691 0.98994 0.88004 1.23142 1.01662 0.93946 1.02160 1.23286 1.00024 1.00324 1.00025 0.91727 0.88922 0.89171 0.88677 0.88228 0.84527 0.84580 0.84796 0.84471 0.87013 0.87073 0.89327 0.89385 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.95 13.96 55.50 0.77 -25.17 16 2 C 0.09 2.56 4.88 -17.47 -0.09 2.47 16 3 Si 0.92 23.97 24.59 -169.99 -4.18 19.79 16 4 H -0.25 -6.73 6.09 56.52 0.34 -6.39 16 5 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.35 -9.47 8.77 -14.93 -0.13 -9.60 16 8 H 0.10 2.76 6.95 -52.49 -0.36 2.40 16 9 N -0.43 -9.85 2.56 -107.73 -0.28 -10.13 16 10 C 0.45 10.01 5.88 -10.99 -0.06 9.95 16 11 O -0.54 -14.10 10.87 5.54 0.06 -14.04 16 12 C -0.12 -1.94 4.34 -27.88 -0.12 -2.06 16 13 C -0.08 -1.29 3.62 37.16 0.13 -1.16 16 14 S -0.11 -1.46 21.92 -107.50 -2.36 -3.82 16 15 C -0.07 -0.84 6.11 -39.04 -0.24 -1.07 16 16 C -0.13 -1.58 9.36 -39.36 -0.37 -1.94 16 17 C -0.08 -0.88 10.04 -39.62 -0.40 -1.28 16 18 C -0.12 -1.19 9.83 -39.49 -0.39 -1.58 16 19 C -0.02 -0.19 6.32 -39.53 -0.25 -0.44 16 20 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 21 C -0.10 -1.10 9.57 -39.33 -0.38 -1.48 16 22 C 0.06 1.07 5.85 -67.93 -0.40 0.67 16 23 C -0.17 -2.82 9.80 -26.69 -0.26 -3.08 16 24 C -0.20 -3.22 10.37 -26.69 -0.28 -3.50 16 25 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.09 1.31 7.57 -51.93 -0.39 0.91 16 27 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 28 H 0.09 1.55 7.72 -51.92 -0.40 1.15 16 29 H 0.10 1.55 7.69 -51.92 -0.40 1.15 16 30 H 0.14 1.75 5.88 -52.49 -0.31 1.44 16 31 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.11 1.62 6.99 -51.93 -0.36 1.26 16 35 H 0.11 2.11 6.48 -51.93 -0.34 1.77 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -31.44 342.19 -10.26 -41.70 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.72 Total: 2.78 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -3.22 Total: -14.09 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.50 Total: -35.30 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.06 Total: -14.04 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.18 Total: 19.79 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.36 Total: -3.82 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.44 -10.26 -41.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288252793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.176 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds