Wall clock time and date at job start Sat Apr 11 2020 01:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86793 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47161 * 273.60657 * 3 2 1 5 5 H 1.48496 * 109.47413 * 33.60478 * 3 2 1 6 6 H 1.48502 * 109.47470 * 153.60683 * 3 2 1 7 7 C 1.38952 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00121 * 341.27308 * 7 2 1 9 9 N 1.37097 * 119.99604 * 161.27231 * 7 2 1 10 10 C 1.34778 * 120.00179 * 320.26144 * 9 7 2 11 11 O 1.21295 * 120.00095 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00233 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47443 * 179.97438 * 12 10 9 14 14 S 1.81400 * 109.47369 * 180.02562 * 13 12 10 15 15 C 1.76194 * 102.99965 * 180.02562 * 14 13 12 16 16 C 1.39003 * 120.07373 * 359.72469 * 15 14 13 17 17 C 1.38072 * 119.94482 * 179.71990 * 16 15 14 18 18 C 1.38312 * 120.09111 * 0.55290 * 17 16 15 19 19 C 1.38404 * 120.14692 * 359.72474 * 18 17 16 20 20 Cl 1.73592 * 119.97215 * 180.02562 * 19 18 17 21 21 C 1.38220 * 120.05251 * 359.97438 * 19 18 17 22 22 C 1.46507 * 120.00072 * 140.26047 * 9 7 2 23 23 C 1.52997 * 117.49485 * 2.39928 * 22 9 7 24 24 C 1.52998 * 117.49921 * 293.73776 * 22 9 7 25 25 H 0.97004 * 120.00160 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47145 * 59.99557 * 12 10 9 27 27 H 1.09004 * 109.47310 * 300.00100 * 12 10 9 28 28 H 1.08999 * 109.46776 * 59.99848 * 13 12 10 29 29 H 1.09004 * 109.47017 * 300.00362 * 13 12 10 30 30 H 1.07999 * 120.03108 * 359.97438 * 16 15 14 31 31 H 1.08003 * 119.95565 * 180.25815 * 17 16 15 32 32 H 1.07997 * 119.92498 * 179.74401 * 18 17 16 33 33 H 1.08002 * 120.04275 * 180.02562 * 21 19 18 34 34 H 1.08997 * 115.54573 * 148.06520 * 22 9 7 35 35 H 1.08998 * 117.50020 * 359.97438 * 23 22 9 36 36 H 1.08998 * 117.49944 * 145.01914 * 23 22 9 37 37 H 1.08992 * 117.49847 * 214.97958 * 24 22 9 38 38 H 1.08997 * 117.49561 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4194 2.0904 -1.3973 5 1 1.4859 2.6294 0.7749 6 1 3.5817 1.4193 0.6224 7 6 2.0088 -1.2034 0.0005 8 1 1.5116 -2.1138 0.3012 9 7 3.3253 -1.2350 -0.3807 10 6 3.7444 -0.4850 -1.4191 11 8 2.9569 0.2182 -2.0162 12 6 5.1914 -0.5202 -1.8385 13 6 5.3993 0.4137 -3.0325 14 16 7.1409 0.3708 -3.5378 15 6 7.1862 1.4878 -4.8996 16 6 6.0247 2.1303 -5.3123 17 6 6.0643 3.0096 -6.3762 18 6 7.2557 3.2431 -7.0388 19 6 8.4133 2.6011 -6.6347 20 17 9.9062 2.8980 -7.4692 21 6 8.3818 1.7244 -5.5666 22 6 4.2767 -2.0840 0.3408 23 6 3.7288 -2.9538 1.4740 24 6 4.5819 -1.7243 1.7962 25 1 -0.4850 0.8401 -0.0004 26 1 5.4631 -1.5372 -2.1216 27 1 5.8184 -0.1944 -1.0085 28 1 5.1275 1.4307 -2.7498 29 1 4.7724 0.0875 -3.8624 30 1 5.0929 1.9451 -4.7988 31 1 5.1628 3.5121 -6.6944 32 1 7.2828 3.9283 -7.8732 33 1 9.2853 1.2238 -5.2511 34 1 5.0908 -2.4919 -0.2582 35 1 2.6607 -2.8941 1.6830 36 1 4.1829 -3.9338 1.6209 37 1 5.5967 -1.8958 2.1548 38 1 4.0752 -0.8557 2.2168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288252793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:23:31 Heat of formation + Delta-G solvation = 5.507893 kcal Electronic energy + Delta-G solvation = -22087.489498 eV Core-core repulsion = 18661.692361 eV Total energy + Delta-G solvation = -3425.797136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03300 -40.15366 -38.15033 -37.50197 -35.09746 -34.02478 -33.30347 -32.21768 -31.80494 -27.84930 -25.31648 -24.00549 -23.64287 -23.21690 -22.83147 -21.00387 -19.14127 -18.93042 -18.05341 -17.45115 -17.25589 -16.61576 -16.47627 -16.13347 -15.94529 -15.41060 -15.24045 -14.91678 -14.79167 -14.67410 -14.50987 -14.19739 -13.51182 -13.33364 -13.00963 -12.91192 -12.80924 -12.60005 -12.50088 -12.29429 -12.18625 -12.02066 -11.97709 -11.60389 -11.31483 -11.20654 -10.81436 -10.72842 -10.44438 -9.92526 -9.43772 -8.52247 -8.43233 -6.17441 -0.05175 0.10279 0.26877 1.06355 1.19192 1.25171 1.30946 1.48373 1.88146 2.40921 2.44348 2.63424 2.94490 3.22585 3.64902 3.73400 3.82262 3.87617 3.94337 4.02571 4.08253 4.18247 4.27707 4.31128 4.39428 4.46171 4.66192 4.69662 4.79684 4.89556 4.97925 5.00048 5.11140 5.23967 5.25068 5.45719 5.59913 5.67618 5.82349 6.71042 6.85659 7.32063 7.81413 8.64218 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.002929 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.565267 B = 9556.681350 C =10514.907711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.039 3.961 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.317 1.317 6 H -0.267 1.267 7 C -0.338 4.338 8 H 0.072 0.928 9 N -0.449 5.449 10 C 0.444 3.556 11 O -0.586 6.586 12 C -0.106 4.106 13 C -0.086 4.086 14 S -0.084 6.084 15 C -0.086 4.086 16 C -0.145 4.145 17 C -0.086 4.086 18 C -0.116 4.116 19 C -0.024 4.024 20 Cl -0.059 7.059 21 C -0.100 4.100 22 C 0.042 3.958 23 C -0.170 4.170 24 C -0.184 4.184 25 H 0.272 0.728 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.947 2.279 -9.782 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.165 4.165 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.247 1.247 6 H -0.191 1.191 7 C -0.465 4.465 8 H 0.090 0.910 9 N -0.169 5.169 10 C 0.234 3.766 11 O -0.472 6.472 12 C -0.147 4.147 13 C -0.235 4.235 14 S 0.162 5.838 15 C -0.199 4.199 16 C -0.169 4.169 17 C -0.106 4.106 18 C -0.137 4.137 19 C -0.052 4.052 20 Cl -0.031 7.031 21 C -0.124 4.124 22 C -0.062 4.062 23 C -0.208 4.208 24 C -0.223 4.223 25 H 0.081 0.919 26 H 0.142 0.858 27 H 0.131 0.869 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.174 0.826 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.381 1.970 -9.537 23.494 hybrid contribution -1.587 1.548 -0.390 2.251 sum 19.793 3.518 -9.927 22.421 Atomic orbital electron populations 1.69826 1.08125 1.28639 1.48540 1.25976 0.95469 1.02282 0.92769 0.85432 0.78429 0.79209 0.76901 1.19465 1.24743 1.19141 1.18691 0.85481 0.94696 1.47617 0.90982 1.43332 1.07344 1.39917 1.26282 1.21019 0.91391 0.83336 0.80804 1.90497 1.57396 1.43238 1.56103 1.21256 0.92780 1.02565 0.98121 1.23319 0.95049 1.03546 1.01599 1.85074 1.11864 1.53258 1.33641 1.21814 0.96483 1.01450 1.00191 1.21528 0.97361 0.98691 0.99280 1.21333 0.98851 0.96426 0.93983 1.21367 0.90553 1.00419 1.01341 1.20889 0.88493 0.99849 0.95959 1.98376 1.32487 1.95051 1.77138 1.20702 0.97365 0.99126 0.95244 1.22300 0.95931 0.99037 0.88944 1.23173 1.00048 0.96140 1.01394 1.23333 1.01870 0.98862 0.98205 0.91924 0.85755 0.86929 0.90394 0.89304 0.85817 0.82618 0.82396 0.83520 0.82657 0.90772 0.85239 0.84869 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.51 13.96 21.66 0.30 -57.21 16 2 C 0.04 2.30 4.88 84.93 0.41 2.72 16 3 Si 0.97 50.99 24.59 68.60 1.69 52.68 16 4 H -0.27 -14.66 6.09 99.48 0.61 -14.06 16 5 H -0.32 -16.53 7.11 99.48 0.71 -15.82 16 6 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.34 -18.83 8.77 84.04 0.74 -18.09 16 8 H 0.07 4.29 6.95 -2.91 -0.02 4.27 16 9 N -0.45 -20.27 2.56 -613.12 -1.57 -21.84 16 10 C 0.44 19.43 5.88 87.66 0.52 19.95 16 11 O -0.59 -30.91 10.87 -3.08 -0.03 -30.95 16 12 C -0.11 -3.18 4.34 29.85 0.13 -3.05 16 13 C -0.09 -2.53 3.62 71.98 0.26 -2.27 16 14 S -0.08 -1.99 21.92 -56.49 -1.24 -3.23 16 15 C -0.09 -2.04 6.11 22.62 0.14 -1.90 16 16 C -0.14 -3.44 9.36 22.41 0.21 -3.23 16 17 C -0.09 -1.64 10.04 22.25 0.22 -1.42 16 18 C -0.12 -1.99 9.83 22.33 0.22 -1.77 16 19 C -0.02 -0.45 6.32 22.31 0.14 -0.31 16 20 Cl -0.06 -0.99 28.95 -2.72 -0.08 -1.07 16 21 C -0.10 -2.08 9.57 22.43 0.21 -1.86 16 22 C 0.04 1.36 5.85 44.99 0.26 1.63 16 23 C -0.17 -5.21 9.80 30.62 0.30 -4.91 16 24 C -0.18 -5.42 10.37 30.62 0.32 -5.11 16 25 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 26 H 0.12 2.97 7.57 -2.39 -0.02 2.96 16 27 H 0.11 2.95 8.11 -2.39 -0.02 2.93 16 28 H 0.08 2.53 7.72 -2.39 -0.02 2.51 16 29 H 0.09 2.75 7.69 -2.39 -0.02 2.74 16 30 H 0.12 3.22 5.88 -2.91 -0.02 3.21 16 31 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.16 3.68 6.99 -2.39 -0.02 3.67 16 35 H 0.07 2.85 6.48 -2.39 -0.02 2.84 16 36 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -72.25 342.19 4.13 -68.12 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.98 Total: 13.11 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 4.08 Total: -19.62 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.26 Total: -79.04 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.03 Total: -30.95 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 1.69 Total: 52.68 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -1.24 Total: -3.23 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -72.25 4.13 -68.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288252793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.628 kcal (2) G-P(sol) polarization free energy of solvation -72.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds