Wall clock time and date at job start Sat Apr 11 2020 01:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00107 * 2 1 4 4 N 1.46506 * 109.47009 * 124.99896 * 3 2 1 5 5 C 1.46498 * 120.00158 * 270.00122 * 4 3 2 6 6 C 1.50698 * 109.47181 * 270.00141 * 5 4 3 7 7 H 1.08004 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00290 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99820 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00110 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47014 * 60.00182 * 10 8 6 12 12 H 1.48496 * 109.47052 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47368 * 300.00149 * 10 8 6 14 14 C 1.34774 * 119.99726 * 89.99971 * 4 3 2 15 15 O 1.21285 * 119.99876 * 180.02562 * 14 4 3 16 16 C 1.50702 * 120.00033 * 0.02562 * 14 4 3 17 17 S 1.81408 * 109.46964 * 180.02562 * 16 14 4 18 18 C 1.76200 * 102.99890 * 180.02562 * 17 16 14 19 19 C 1.38943 * 120.08321 * 359.96994 * 18 17 16 20 20 C 1.38095 * 119.93341 * 180.02562 * 19 18 17 21 21 C 1.38315 * 120.09588 * 0.02843 * 20 19 18 22 22 C 1.38285 * 120.17055 * 359.97438 * 21 20 19 23 23 C 1.38189 * 120.06580 * 359.97438 * 22 21 20 24 24 Cl 1.73605 * 120.05138 * 180.02562 * 23 22 21 25 25 H 1.08001 * 120.00573 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99703 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99703 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47114 * 5.00283 * 3 2 1 29 29 H 1.08997 * 109.47137 * 244.99602 * 3 2 1 30 30 H 1.09002 * 109.47070 * 29.99983 * 5 4 3 31 31 H 1.08995 * 109.47021 * 150.00100 * 5 4 3 32 32 H 0.96996 * 120.00025 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47071 * 59.99973 * 16 14 4 34 34 H 1.09000 * 109.47250 * 299.99807 * 16 14 4 35 35 H 1.08003 * 120.03525 * 0.05021 * 19 18 17 36 36 H 1.08000 * 119.95248 * 180.29889 * 20 19 18 37 37 H 1.08003 * 119.91246 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.97004 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8368 1.6369 8 6 2.5185 4.0666 3.6083 9 7 1.9582 3.4660 4.6354 10 14 2.8729 5.8994 3.6774 11 1 2.1380 6.5872 2.5855 12 1 2.4309 6.4399 4.9879 13 1 4.3310 6.1282 3.5134 14 6 4.2497 0.8660 0.9824 15 8 5.0197 0.8878 1.9192 16 6 4.6972 0.3183 -0.3483 17 16 6.4236 -0.2258 -0.2285 18 6 6.7642 -0.8239 -1.8505 19 6 5.7780 -0.7850 -2.8285 20 6 6.0481 -1.2550 -4.0985 21 6 7.2985 -1.7648 -4.3981 22 6 8.2830 -1.8056 -3.4279 23 6 8.0205 -1.3361 -2.1550 24 17 9.2571 -1.3868 -0.9375 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6214 1.4025 -0.9313 30 1 1.4888 1.6965 2.5460 31 1 3.0990 1.3602 3.2259 32 1 1.7293 3.9746 5.4289 33 1 4.6126 1.0952 -1.1080 34 1 4.0681 -0.5284 -0.6228 35 1 4.8012 -0.3872 -2.5957 36 1 5.2832 -1.2205 -4.8603 37 1 7.5064 -2.1320 -5.3923 38 1 9.2584 -2.2039 -3.6654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292575875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:23:43 Heat of formation + Delta-G solvation = 8.338594 kcal Electronic energy + Delta-G solvation = -21929.680355 eV Core-core repulsion = 18504.005967 eV Total energy + Delta-G solvation = -3425.674388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.29632 -39.18428 -36.57074 -35.81427 -33.29960 -32.21894 -31.66197 -30.91600 -30.00780 -27.24306 -25.51045 -23.23387 -23.15298 -22.51700 -20.10968 -18.92222 -17.95603 -16.82320 -16.53867 -16.37926 -15.91480 -15.50496 -15.20240 -14.85019 -14.60360 -14.26918 -13.99731 -13.86337 -13.56713 -13.38528 -12.65322 -12.62243 -12.06902 -11.99775 -11.79557 -11.72004 -11.69964 -11.31592 -11.13087 -11.11098 -10.95198 -10.62472 -10.22792 -10.06240 -9.99419 -9.72295 -9.29554 -9.18072 -9.07799 -8.46666 -7.84220 -7.43151 -6.08065 -4.13429 0.83476 0.92576 1.28034 1.96843 2.32927 2.41558 3.16484 3.29702 3.30157 3.35036 3.38681 3.82468 4.41395 4.46098 4.64683 4.79614 4.95441 4.96644 5.00257 5.09140 5.19968 5.23121 5.26338 5.33345 5.49116 5.52010 5.78233 5.88922 5.91509 6.07729 6.10489 6.44748 6.69226 6.79631 6.95924 7.36029 7.42516 7.87048 8.16778 8.21790 8.76847 8.93575 9.51737 11.00106 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.003270 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.913633 B = 8559.436855 C = 9712.792082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.134 3.866 4 N -0.586 5.586 5 C 0.249 3.751 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.524 3.476 15 O -0.519 6.519 16 C -0.159 4.159 17 S 0.004 5.996 18 C -0.095 4.095 19 C -0.129 4.129 20 C -0.094 4.094 21 C -0.123 4.123 22 C -0.091 4.091 23 C -0.026 4.026 24 Cl -0.054 7.054 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -11.452 -19.697 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.010 3.990 4 N -0.317 5.317 5 C 0.130 3.870 6 C -0.569 4.569 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.307 3.693 15 O -0.395 6.395 16 C -0.310 4.310 17 S 0.250 5.750 18 C -0.209 4.209 19 C -0.154 4.154 20 C -0.114 4.114 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.060 4.060 24 Cl -0.025 7.025 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.373 -11.261 -17.735 21.954 hybrid contribution -0.757 0.917 -1.072 1.601 sum 5.617 -10.344 -18.807 22.187 Atomic orbital electron populations 1.23843 0.95808 1.01899 0.99960 1.23399 0.96483 0.98857 1.00460 1.20634 0.93200 0.95662 0.89473 1.48164 1.09800 1.59820 1.13938 1.19335 0.95536 0.93852 0.78254 1.21373 1.40931 0.93188 1.01433 0.92437 1.24923 0.94930 0.98831 0.95268 1.69919 1.41732 1.36353 1.05191 0.86555 0.78926 0.84750 0.77191 1.20237 1.21132 1.20078 1.19268 0.83057 0.79238 0.87691 1.90740 1.52105 1.55693 1.40963 1.24101 0.98844 1.05295 1.02777 1.86705 1.10838 1.73247 1.04184 1.22232 0.95544 1.02510 1.00616 1.21202 0.98516 1.02433 0.93246 1.21156 0.97086 0.97029 0.96121 1.21091 0.93118 1.00992 0.99290 1.20993 1.00311 0.99022 0.90838 1.20382 0.89485 1.04795 0.91320 1.98390 1.52468 1.96920 1.54677 0.88666 0.88171 0.87810 0.89055 0.90953 0.94679 0.93690 0.92581 0.86978 0.87118 0.85055 0.85208 0.85075 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 14.32 29.01 0.42 -1.71 16 2 C -0.17 -2.27 9.74 -36.03 -0.35 -2.62 16 3 C 0.13 2.02 5.65 -5.19 -0.03 2.00 16 4 N -0.59 -11.87 2.44 -176.43 -0.43 -12.30 16 5 C 0.25 6.37 5.16 -5.20 -0.03 6.34 16 6 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 7 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 10 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.52 10.57 7.69 -10.99 -0.08 10.49 16 15 O -0.52 -12.93 15.44 5.55 0.09 -12.84 16 16 C -0.16 -2.29 3.37 36.01 0.12 -2.17 16 17 S 0.00 0.06 19.97 -107.50 -2.15 -2.09 16 18 C -0.09 -1.20 6.11 -39.02 -0.24 -1.43 16 19 C -0.13 -1.33 9.36 -39.37 -0.37 -1.70 16 20 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 21 C -0.12 -0.97 10.04 -39.54 -0.40 -1.37 16 22 C -0.09 -0.85 9.82 -39.58 -0.39 -1.24 16 23 C -0.03 -0.31 6.34 -39.30 -0.25 -0.56 16 24 Cl -0.05 -0.67 27.84 -51.86 -1.44 -2.12 16 25 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.10 1.19 7.84 -52.49 -0.41 0.77 16 27 H 0.10 1.27 7.83 -52.49 -0.41 0.86 16 28 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 29 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 33 H 0.11 1.37 7.01 -51.93 -0.36 1.01 16 34 H 0.11 1.30 7.38 -51.92 -0.38 0.92 16 35 H 0.13 1.16 5.88 -52.48 -0.31 0.85 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -33.01 356.28 -9.92 -42.93 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.65 Total: -1.47 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.42 Total: -8.58 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.31 Total: -37.89 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.15 Total: -2.09 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.44 Total: -2.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.01 -9.92 -42.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292575875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.273 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds