Wall clock time and date at job start Sat Apr 11 2020 01:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99600 * 2 1 4 4 C 1.52997 * 109.47111 * 125.00073 * 3 2 1 5 5 H 1.09004 * 109.47170 * 54.99648 * 4 3 2 6 6 N 1.46510 * 109.47026 * 295.00104 * 4 3 2 7 7 S 1.65599 * 119.99994 * 122.04243 * 6 4 3 8 8 O 1.42103 * 106.39965 * 174.52020 * 7 6 4 9 9 O 1.42092 * 106.40528 * 307.44852 * 7 6 4 10 10 N 1.65602 * 107.21585 * 60.98893 * 7 6 4 11 11 C 1.46502 * 119.99937 * 264.75636 * 10 7 6 12 12 C 1.46500 * 120.00414 * 84.75581 * 10 7 6 13 13 C 1.50698 * 109.46871 * 96.40303 * 12 10 7 14 14 H 1.08000 * 120.00454 * 4.25797 * 13 12 10 15 15 C 1.37881 * 119.99629 * 184.25990 * 13 12 10 16 16 N 1.31513 * 120.00232 * 5.68803 * 15 13 12 17 17 Si 1.86807 * 119.99703 * 185.69022 * 15 13 12 18 18 H 1.48501 * 109.47074 * 64.99631 * 17 15 13 19 19 H 1.48501 * 109.46889 * 184.99445 * 17 15 13 20 20 H 1.48495 * 109.47169 * 304.99373 * 17 15 13 21 21 C 1.50690 * 109.47243 * 174.99969 * 4 3 2 22 22 C 1.38652 * 120.79092 * 77.97951 * 21 4 3 23 23 C 1.38202 * 119.16281 * 180.02562 * 22 21 4 24 24 N 1.31873 * 120.76536 * 359.97438 * 23 22 21 25 25 C 1.31872 * 121.72678 * 0.02562 * 24 23 22 26 26 C 1.38205 * 120.76176 * 0.02562 * 25 24 23 27 27 H 1.08003 * 120.00620 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99646 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00188 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46966 * 4.99830 * 3 2 1 31 31 H 1.08993 * 109.46674 * 245.00047 * 3 2 1 32 32 H 0.97000 * 119.99838 * 302.04275 * 6 4 3 33 33 H 1.08998 * 109.47470 * 89.99851 * 11 10 7 34 34 H 1.08998 * 109.47482 * 210.00309 * 11 10 7 35 35 H 1.09010 * 109.46831 * 329.99943 * 11 10 7 36 36 H 1.09005 * 109.47295 * 216.40038 * 12 10 7 37 37 H 1.08996 * 109.47149 * 336.40229 * 12 10 7 38 38 H 0.96999 * 119.99813 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.41671 * 0.04199 * 22 21 4 40 40 H 1.08005 * 119.62207 * 180.26238 * 23 22 21 41 41 H 1.07994 * 119.62003 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.41761 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6826 0.4575 1.1403 6 7 2.2784 1.3224 2.4362 7 16 2.5299 0.1177 3.5443 8 8 1.7556 0.4556 4.6869 9 8 2.3854 -1.1095 2.8427 10 7 4.1161 0.2051 4.0119 11 6 5.1201 -0.6375 3.3575 12 6 4.5154 1.1250 5.0799 13 6 4.5763 0.3796 6.3882 14 1 4.4085 -0.6871 6.4103 15 6 4.8462 1.0594 7.5570 16 7 4.9397 2.3712 7.5482 17 14 5.0791 0.1170 9.1530 18 1 6.2934 -0.7320 9.0538 19 1 5.2362 1.0763 10.2757 20 1 3.8930 -0.7421 9.3983 21 6 3.8745 2.5826 1.1121 22 6 3.3595 3.8069 1.5100 23 6 4.1590 4.9315 1.4316 24 7 5.3973 4.8490 0.9854 25 6 5.9200 3.7018 0.5986 26 6 5.1801 2.5355 0.6476 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1317 0.0895 31 1 2.6211 1.4027 -0.9313 32 1 1.6303 2.0208 2.6178 33 1 5.5339 -0.1092 2.4986 34 1 5.9190 -0.8654 4.0632 35 1 4.6545 -1.5650 3.0239 36 1 5.4969 1.5412 4.8528 37 1 3.7870 1.9323 5.1552 38 1 5.1299 2.8493 8.3704 39 1 2.3464 3.8807 1.8769 40 1 3.7668 5.8882 1.7436 41 1 6.9378 3.6735 0.2384 42 1 5.6140 1.5989 0.3298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734502545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:25:40 Heat of formation + Delta-G solvation = -20.321572 kcal Electronic energy + Delta-G solvation = -26562.482981 eV Core-core repulsion = 22862.982476 eV Total energy + Delta-G solvation = -3699.500505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30383 -37.37079 -36.52246 -35.52058 -35.18239 -33.70162 -32.44524 -31.94630 -31.15923 -28.50479 -27.79140 -25.10922 -24.47272 -23.49967 -22.30450 -21.43658 -20.00257 -19.00744 -17.46124 -17.19838 -16.70835 -16.35562 -16.11998 -15.78978 -15.57292 -15.20623 -14.48892 -14.16683 -14.08005 -13.92781 -13.66904 -13.54098 -13.39543 -13.31207 -12.49733 -12.32957 -12.18519 -11.88003 -11.64827 -11.50080 -11.44055 -11.37198 -11.18120 -11.07368 -11.01494 -10.73869 -10.52398 -10.07766 -9.87641 -9.76013 -9.66770 -9.45644 -9.16497 -9.13343 -8.44291 -8.09925 -6.07152 -4.10760 1.10445 1.15396 1.28357 2.29465 3.32601 3.36655 3.39686 3.43553 3.82565 4.09032 4.35551 4.44162 4.47485 4.62104 4.86557 4.91641 5.04257 5.07187 5.13694 5.18157 5.21073 5.27545 5.38574 5.59244 5.60269 5.70761 5.73795 5.83589 5.91237 5.93332 5.97978 6.22610 6.36243 6.52134 6.64295 6.68709 6.74937 7.02648 7.21806 7.38409 7.57923 7.90494 7.97979 8.19426 8.90916 9.54053 11.01440 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.005211 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.034412 B = 5372.154344 C = 6884.329112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C -0.095 4.095 4 C 0.203 3.797 5 H 0.100 0.900 6 N -1.123 6.123 7 S 2.780 3.220 8 O -0.962 6.962 9 O -0.994 6.994 10 N -0.994 5.994 11 C 0.094 3.906 12 C 0.261 3.739 13 C -0.531 4.531 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.048 4.048 22 C -0.154 4.154 23 C 0.101 3.899 24 N -0.487 5.487 25 C 0.100 3.900 26 C -0.163 4.163 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.412 0.588 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 0.845 -18.120 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.162 4.162 3 C -0.134 4.134 4 C 0.095 3.905 5 H 0.118 0.882 6 N -0.880 5.880 7 S 2.787 3.213 8 O -0.946 6.946 9 O -0.977 6.977 10 N -0.837 5.837 11 C -0.053 4.053 12 C 0.139 3.861 13 C -0.571 4.571 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.058 4.058 22 C -0.174 4.174 23 C -0.055 4.055 24 N -0.196 5.196 25 C -0.057 4.057 26 C -0.184 4.184 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.245 0.755 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.150 0.850 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.516 0.981 -17.754 17.958 hybrid contribution -0.295 -0.580 1.121 1.296 sum -2.812 0.400 -16.633 16.874 Atomic orbital electron populations 1.23796 0.95964 1.01646 1.01903 1.22899 0.96197 0.98136 0.98965 1.21114 0.98223 0.96661 0.97444 1.19482 0.91419 0.95032 0.84569 0.88232 1.56385 1.53168 1.47297 1.31139 1.02060 0.73474 0.73184 0.72579 1.93655 1.69170 1.84002 1.47782 1.93526 1.86064 1.42980 1.75131 1.57591 1.25130 1.52935 1.48067 1.21373 0.93396 0.93673 0.96843 1.18998 0.96428 0.87491 0.83136 1.21436 1.48803 0.94963 0.91852 0.92191 1.24932 0.95108 0.94834 0.99039 1.69919 1.48670 1.06326 1.28327 0.86583 0.78803 0.79669 0.82565 1.20226 1.21149 1.19972 1.20588 0.94417 0.95486 0.95330 1.21899 1.01739 0.92976 1.00770 1.22734 0.89490 0.98571 0.94742 1.67659 1.13097 1.28563 1.10280 1.22705 0.99738 0.87745 0.95472 1.21999 0.94303 1.00369 1.01696 0.88866 0.88506 0.86617 0.90649 0.89787 0.75491 0.94546 0.90330 0.91472 0.95336 0.94337 0.92623 0.84986 0.82814 0.82838 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 14.32 29.01 0.42 -1.65 16 2 C -0.14 -1.57 9.25 -36.02 -0.33 -1.91 16 3 C -0.10 -0.91 5.31 -27.88 -0.15 -1.06 16 4 C 0.20 2.34 2.57 -69.08 -0.18 2.16 16 5 H 0.10 1.13 7.33 -51.93 -0.38 0.75 16 6 N -1.12 -15.76 4.85 -5.88 -0.03 -15.79 16 7 S 2.78 53.17 5.89 -107.50 -0.63 52.54 16 8 O -0.96 -22.95 17.28 -57.17 -0.99 -23.94 16 9 O -0.99 -19.23 16.39 -57.17 -0.94 -20.17 16 10 N -0.99 -20.02 3.23 -123.05 -0.40 -20.42 16 11 C 0.09 1.54 10.47 59.85 0.63 2.17 16 12 C 0.26 6.50 5.10 -5.19 -0.03 6.47 16 13 C -0.53 -14.89 9.37 -34.44 -0.32 -15.22 16 14 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 15 C 0.06 1.80 5.45 -17.82 -0.10 1.71 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 17 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.05 -0.56 4.97 -104.32 -0.52 -1.08 16 22 C -0.15 -1.79 9.42 -39.44 -0.37 -2.17 16 23 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 24 N -0.49 -6.56 10.36 -13.25 -0.14 -6.69 16 25 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16 26 C -0.16 -1.78 9.78 -39.44 -0.39 -2.16 16 27 H 0.09 0.86 7.84 -52.48 -0.41 0.45 16 28 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.41 5.09 8.02 -34.47 -0.28 4.82 16 33 H 0.04 0.48 8.01 -51.93 -0.42 0.06 16 34 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 35 H 0.07 1.03 7.00 -51.92 -0.36 0.67 16 36 H 0.03 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.04 1.03 7.70 -51.93 -0.40 0.63 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.13 1.31 7.20 -52.49 -0.38 0.93 16 40 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -35.12 372.16 -9.48 -44.61 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.95 Total: 3.65 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.73 Total: -10.72 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: 0.17 Total: -68.40 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.92 Total: -44.11 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 53.17 SS G_CDS: -0.63 Total: 52.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.12 -9.48 -44.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734502545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.284 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds