Wall clock time and date at job start Sat Apr 11 2020 01:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99600 * 2 1 4 4 C 1.52997 * 109.47111 * 125.00073 * 3 2 1 5 5 H 1.09004 * 109.47170 * 54.99648 * 4 3 2 6 6 N 1.46510 * 109.47026 * 295.00104 * 4 3 2 7 7 S 1.65599 * 119.99994 * 122.04243 * 6 4 3 8 8 O 1.42103 * 106.39965 * 174.52020 * 7 6 4 9 9 O 1.42092 * 106.40528 * 307.44852 * 7 6 4 10 10 N 1.65602 * 107.21585 * 60.98893 * 7 6 4 11 11 C 1.46502 * 119.99937 * 264.75636 * 10 7 6 12 12 C 1.46500 * 120.00414 * 84.75581 * 10 7 6 13 13 C 1.50698 * 109.46871 * 96.40303 * 12 10 7 14 14 H 1.08000 * 120.00454 * 4.25797 * 13 12 10 15 15 C 1.37881 * 119.99629 * 184.25990 * 13 12 10 16 16 N 1.31513 * 120.00232 * 5.68803 * 15 13 12 17 17 Si 1.86807 * 119.99703 * 185.69022 * 15 13 12 18 18 H 1.48501 * 109.47074 * 64.99631 * 17 15 13 19 19 H 1.48501 * 109.46889 * 184.99445 * 17 15 13 20 20 H 1.48495 * 109.47169 * 304.99373 * 17 15 13 21 21 C 1.50690 * 109.47243 * 174.99969 * 4 3 2 22 22 C 1.38652 * 120.79092 * 77.97951 * 21 4 3 23 23 C 1.38202 * 119.16281 * 180.02562 * 22 21 4 24 24 N 1.31873 * 120.76536 * 359.97438 * 23 22 21 25 25 C 1.31872 * 121.72678 * 0.02562 * 24 23 22 26 26 C 1.38205 * 120.76176 * 0.02562 * 25 24 23 27 27 H 1.08003 * 120.00620 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99646 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00188 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46966 * 4.99830 * 3 2 1 31 31 H 1.08993 * 109.46674 * 245.00047 * 3 2 1 32 32 H 0.97000 * 119.99838 * 302.04275 * 6 4 3 33 33 H 1.08998 * 109.47470 * 89.99851 * 11 10 7 34 34 H 1.08998 * 109.47482 * 210.00309 * 11 10 7 35 35 H 1.09010 * 109.46831 * 329.99943 * 11 10 7 36 36 H 1.09005 * 109.47295 * 216.40038 * 12 10 7 37 37 H 1.08996 * 109.47149 * 336.40229 * 12 10 7 38 38 H 0.96999 * 119.99813 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.41671 * 0.04199 * 22 21 4 40 40 H 1.08005 * 119.62207 * 180.26238 * 23 22 21 41 41 H 1.07994 * 119.62003 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.41761 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6826 0.4575 1.1403 6 7 2.2784 1.3224 2.4362 7 16 2.5299 0.1177 3.5443 8 8 1.7556 0.4556 4.6869 9 8 2.3854 -1.1095 2.8427 10 7 4.1161 0.2051 4.0119 11 6 5.1201 -0.6375 3.3575 12 6 4.5154 1.1250 5.0799 13 6 4.5763 0.3796 6.3882 14 1 4.4085 -0.6871 6.4103 15 6 4.8462 1.0594 7.5570 16 7 4.9397 2.3712 7.5482 17 14 5.0791 0.1170 9.1530 18 1 6.2934 -0.7320 9.0538 19 1 5.2362 1.0763 10.2757 20 1 3.8930 -0.7421 9.3983 21 6 3.8745 2.5826 1.1121 22 6 3.3595 3.8069 1.5100 23 6 4.1590 4.9315 1.4316 24 7 5.3973 4.8490 0.9854 25 6 5.9200 3.7018 0.5986 26 6 5.1801 2.5355 0.6476 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1317 0.0895 31 1 2.6211 1.4027 -0.9313 32 1 1.6303 2.0208 2.6178 33 1 5.5339 -0.1092 2.4986 34 1 5.9190 -0.8654 4.0632 35 1 4.6545 -1.5650 3.0239 36 1 5.4969 1.5412 4.8528 37 1 3.7870 1.9323 5.1552 38 1 5.1299 2.8493 8.3704 39 1 2.3464 3.8807 1.8769 40 1 3.7668 5.8882 1.7436 41 1 6.9378 3.6735 0.2384 42 1 5.6140 1.5989 0.3298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734502545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:25:39 Heat of formation + Delta-G solvation = -45.439880 kcal Electronic energy + Delta-G solvation = -26563.572192 eV Core-core repulsion = 22862.982476 eV Total energy + Delta-G solvation = -3700.589717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18611 -38.48039 -37.99048 -37.21259 -36.82866 -34.60500 -34.48454 -32.96278 -32.02579 -29.68119 -29.38391 -26.79370 -25.34479 -24.37888 -24.20464 -22.36822 -20.89394 -20.33947 -19.00054 -18.46563 -18.33858 -18.00302 -17.16380 -16.98144 -16.63640 -16.41691 -16.17786 -15.33696 -15.03523 -14.99116 -14.93878 -14.71543 -14.54961 -14.38312 -14.07055 -13.89685 -13.49175 -13.30695 -13.12206 -13.03984 -12.92118 -12.78014 -12.61575 -12.48693 -12.35693 -12.27165 -11.99818 -11.84513 -11.77798 -10.93535 -10.59535 -10.57354 -10.36139 -10.05306 -9.99908 -9.78183 -8.21317 -6.32783 -0.32799 0.28688 0.32167 1.38764 1.41491 1.47405 1.49052 2.01491 2.39773 2.64347 2.93728 3.09323 3.45445 3.49936 3.67592 3.76900 4.02313 4.09380 4.13789 4.23151 4.28398 4.31906 4.40212 4.55069 4.69301 4.77149 4.81341 4.90319 4.96725 4.99937 5.06251 5.07502 5.15318 5.17412 5.41973 5.47772 5.68546 5.82806 5.84438 5.85819 5.94133 6.06927 6.12582 6.75268 7.10221 7.35948 8.86010 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.005211 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.034412 B = 5372.154344 C = 6884.329112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.088 4.088 4 C 0.201 3.799 5 H 0.105 0.895 6 N -1.110 6.110 7 S 2.796 3.204 8 O -1.015 7.015 9 O -0.996 6.996 10 N -1.001 6.001 11 C 0.085 3.915 12 C 0.280 3.720 13 C -0.551 4.551 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.924 5.924 17 Si 0.956 3.044 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.277 1.277 21 C -0.056 4.056 22 C -0.162 4.162 23 C 0.085 3.915 24 N -0.515 5.515 25 C 0.088 3.912 26 C -0.163 4.163 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.421 0.579 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.020 0.980 37 H 0.014 0.986 38 H 0.267 0.733 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 0.230 -19.296 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.174 4.174 3 C -0.126 4.126 4 C 0.094 3.906 5 H 0.123 0.877 6 N -0.871 5.871 7 S 2.804 3.196 8 O -0.999 6.999 9 O -0.979 6.979 10 N -0.843 5.843 11 C -0.060 4.060 12 C 0.156 3.844 13 C -0.590 4.590 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.780 3.220 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.066 4.066 22 C -0.182 4.182 23 C -0.072 4.072 24 N -0.225 5.225 25 C -0.068 4.068 26 C -0.183 4.183 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.256 0.744 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.162 0.838 40 H 0.185 0.815 41 H 0.194 0.806 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.058 0.346 -18.950 19.064 hybrid contribution -0.450 -0.394 1.367 1.493 sum -2.509 -0.049 -17.582 17.760 Atomic orbital electron populations 1.23985 0.96117 1.02358 1.01406 1.22999 0.96466 0.98504 0.99471 1.21089 0.98034 0.96250 0.97262 1.19719 0.91811 0.95314 0.83758 0.87683 1.55931 1.53482 1.46580 1.31119 1.01312 0.72601 0.73527 0.72132 1.93582 1.70575 1.84892 1.50882 1.93519 1.85906 1.43650 1.74865 1.57460 1.26177 1.52884 1.47777 1.21628 0.92586 0.94184 0.97602 1.18480 0.95105 0.87276 0.83510 1.21814 1.48670 0.94945 0.93594 0.92848 1.25757 0.94839 0.95724 1.02406 1.70019 1.49437 1.07606 1.29269 0.85650 0.79001 0.78597 0.78738 1.18679 1.20334 1.20207 1.20660 0.94896 0.95276 0.95777 1.22100 1.02394 0.93027 1.00725 1.23041 0.89517 0.99563 0.95029 1.67663 1.13770 1.29816 1.11204 1.23166 1.00880 0.87557 0.95210 1.22309 0.93831 1.01310 1.00823 0.87574 0.88574 0.87434 0.89616 0.87587 0.74375 0.90826 0.91204 0.90344 0.96150 0.96839 0.92435 0.83777 0.81519 0.80620 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.90 14.32 67.78 0.97 -2.93 16 2 C -0.16 -3.10 9.25 25.65 0.24 -2.86 16 3 C -0.09 -1.43 5.31 29.85 0.16 -1.27 16 4 C 0.20 4.16 2.57 44.24 0.11 4.28 16 5 H 0.11 2.08 7.33 -2.38 -0.02 2.06 16 6 N -1.11 -29.75 4.85 -172.52 -0.84 -30.59 16 7 S 2.80 105.55 5.89 -56.49 -0.33 105.21 16 8 O -1.02 -49.19 17.28 -128.00 -2.21 -51.40 16 9 O -1.00 -37.35 16.39 -128.00 -2.10 -39.45 16 10 N -1.00 -39.75 3.23 -543.22 -1.75 -41.50 16 11 C 0.09 2.65 10.47 127.77 1.34 3.99 16 12 C 0.28 14.08 5.10 85.63 0.44 14.51 16 13 C -0.55 -31.18 9.37 25.60 0.24 -30.94 16 14 H 0.05 3.01 7.82 -2.91 -0.02 2.99 16 15 C 0.01 0.71 5.45 84.66 0.46 1.17 16 16 N -0.92 -54.73 13.29 21.45 0.29 -54.44 16 17 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 C -0.06 -1.19 4.97 -19.67 -0.10 -1.28 16 22 C -0.16 -3.59 9.42 22.36 0.21 -3.38 16 23 C 0.08 2.01 11.18 84.68 0.95 2.96 16 24 N -0.51 -13.41 10.36 -195.84 -2.03 -15.44 16 25 C 0.09 1.89 11.18 84.68 0.95 2.84 16 26 C -0.16 -3.12 9.78 22.36 0.22 -2.91 16 27 H 0.11 1.73 7.84 -2.91 -0.02 1.71 16 28 H 0.10 1.83 8.06 -2.91 -0.02 1.80 16 29 H 0.11 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.09 1.25 7.79 -2.39 -0.02 1.23 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.42 9.98 8.02 -96.75 -0.78 9.20 16 33 H 0.07 1.73 8.01 -2.39 -0.02 1.71 16 34 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 35 H 0.08 2.26 7.00 -2.38 -0.02 2.24 16 36 H 0.02 1.05 8.12 -2.38 -0.02 1.03 16 37 H 0.01 0.75 7.70 -2.39 -0.02 0.73 16 38 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.14 2.68 7.20 -2.91 -0.02 2.66 16 40 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 41 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -75.76 372.16 -0.53 -76.28 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.24 Total: 20.46 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 6.18 Total: -15.82 kcal Atomic # 7 Polarization: -137.64 SS G_CDS: -4.33 Total: -141.98 kcal Atomic # 8 Polarization: -86.54 SS G_CDS: -4.31 Total: -90.85 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 105.55 SS G_CDS: -0.33 Total: 105.21 kcal Total: -75.76 -0.53 -76.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734502545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.843 kcal (2) G-P(sol) polarization free energy of solvation -75.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds