Wall clock time and date at job start Sat Apr 11 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29110 * 126.01083 * 2 1 4 4 N 1.29012 * 110.26147 * 180.02562 * 3 2 1 5 5 C 1.32913 * 108.63865 * 0.02562 * 4 3 2 6 6 C 1.34395 * 126.00710 * 179.97438 * 2 1 3 7 7 C 1.50543 * 129.25835 * 359.85638 * 6 2 1 8 8 C 1.53432 * 108.32465 * 196.44458 * 7 6 2 9 9 H 1.08996 * 109.46185 * 70.30381 * 8 7 6 10 10 C 1.50696 * 109.45651 * 190.25620 * 8 7 6 11 11 O 1.20828 * 120.00033 * 0.07736 * 10 8 7 12 12 O 1.34231 * 120.00266 * 180.08309 * 10 8 7 13 13 C 1.45202 * 117.00038 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.46868 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47065 * 179.97438 * 14 13 12 16 16 S 1.81003 * 109.47225 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99988 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99919 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00020 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99768 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00210 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47194 * 89.99889 * 21 19 17 23 23 H 1.48497 * 109.47593 * 209.99822 * 21 19 17 24 24 H 1.48499 * 109.47351 * 330.00012 * 21 19 17 25 25 C 1.53116 * 109.55255 * 310.27680 * 8 7 6 26 26 C 1.50590 * 129.16003 * 179.79033 * 5 4 3 27 27 H 1.08998 * 109.47344 * 270.02337 * 1 2 3 28 28 H 1.09006 * 109.47295 * 30.02587 * 1 2 3 29 29 H 1.09005 * 109.47120 * 150.02286 * 1 2 3 30 30 H 1.08996 * 109.68754 * 76.73655 * 7 6 2 31 31 H 1.08996 * 109.72047 * 316.17326 * 7 6 2 32 32 H 1.09004 * 109.46620 * 299.99410 * 13 12 10 33 33 H 1.08994 * 109.47471 * 59.99444 * 13 12 10 34 34 H 1.09004 * 109.46941 * 299.99119 * 14 13 12 35 35 H 1.09002 * 109.47954 * 59.99466 * 14 13 12 36 36 H 1.09004 * 109.47217 * 299.99552 * 15 14 13 37 37 H 1.09000 * 109.47604 * 59.99538 * 15 14 13 38 38 H 0.96998 * 119.99941 * 180.02562 * 20 19 17 39 39 H 1.08991 * 109.45354 * 190.10362 * 25 8 7 40 40 H 1.08994 * 109.44915 * 310.04169 * 25 8 7 41 41 H 1.09007 * 109.69275 * 76.88895 * 26 5 4 42 42 H 1.08993 * 109.69415 * 316.30487 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6942 -0.0005 5 6 3.5327 -0.6332 -0.0015 6 6 2.2550 -1.0872 0.0005 7 6 1.8721 -2.5431 0.0041 8 6 3.1013 -3.3641 0.4155 9 1 3.3139 -3.1955 1.4711 10 6 2.8266 -4.8281 0.1866 11 8 1.7605 -5.1801 -0.2601 12 8 3.7661 -5.7410 0.4792 13 6 3.4325 -7.1326 0.2327 14 6 4.6171 -8.0180 0.6244 15 6 4.2655 -9.4843 0.3652 16 16 5.6672 -10.5319 0.8279 17 6 5.0057 -12.1178 0.4382 18 1 4.0057 -12.2026 0.0392 19 6 5.7701 -13.2581 0.6431 20 7 6.9895 -13.1545 1.1280 21 14 5.0691 -14.9393 0.2294 22 1 5.3923 -15.2772 -1.1801 23 1 5.6627 -15.9588 1.1313 24 1 3.5950 -14.9187 0.4079 25 6 4.3084 -2.9347 -0.4229 26 6 4.7468 -1.5241 -0.0067 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5143 29 1 -0.3634 -0.8902 -0.5135 30 1 1.5490 -2.8403 -0.9936 31 1 1.0642 -2.7092 0.7165 32 1 2.5613 -7.4081 0.8271 33 1 3.2091 -7.2708 -0.8251 34 1 5.4886 -7.7426 0.0303 35 1 4.8401 -7.8798 1.6823 36 1 3.3941 -9.7595 0.9595 37 1 4.0423 -9.6230 -0.6926 38 1 7.5238 -13.9513 1.2709 39 1 5.1298 -3.6325 -0.2607 40 1 4.0358 -2.9343 -1.4781 41 1 5.1846 -1.5543 0.9912 42 1 5.4791 -1.1429 -0.7182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811342991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:26:47 Heat of formation + Delta-G solvation = -12.803557 kcal Electronic energy + Delta-G solvation = -24001.127442 eV Core-core repulsion = 20301.952942 eV Total energy + Delta-G solvation = -3699.174500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -43.80681 -40.82203 -37.71772 -36.61061 -35.31684 -33.57379 -32.47317 -31.10258 -30.95999 -28.30888 -26.94983 -25.62728 -24.92257 -23.74577 -21.87325 -21.45811 -21.25504 -19.96113 -18.14009 -17.50677 -17.40414 -17.16109 -16.79670 -16.34205 -15.25751 -14.93746 -14.84729 -14.51685 -14.33008 -14.31140 -14.18826 -13.77752 -13.53524 -13.34276 -12.92479 -12.85757 -12.61345 -12.37519 -12.18433 -11.94183 -11.63991 -11.48480 -11.38745 -11.19325 -11.04361 -10.99587 -10.93428 -10.71744 -10.54211 -10.37562 -10.34714 -9.66956 -9.25393 -9.10541 -8.39317 -6.59831 -6.27707 -3.99007 1.13960 1.86021 1.95246 2.16552 2.40756 3.18744 3.19490 3.26547 3.48401 3.70760 3.92472 4.11437 4.17026 4.22922 4.27198 4.41991 4.44183 4.66161 4.73783 4.75171 4.93995 4.96034 5.03996 5.09011 5.10827 5.13671 5.33304 5.35247 5.38228 5.42385 5.59372 5.60421 5.68305 5.71838 5.84403 5.86863 6.10215 6.13280 6.34707 6.39742 6.61796 7.53610 7.56151 8.12631 8.31795 9.18729 10.80409 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.040063 B = 0.001757 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.732130 B =15934.924765 C =16507.710526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.282 5.282 3 N -0.096 5.096 4 N -0.260 5.260 5 C -0.018 4.018 6 C -0.019 4.019 7 C -0.029 4.029 8 C -0.075 4.075 9 H 0.118 0.882 10 C 0.468 3.532 11 O -0.510 6.510 12 O -0.350 6.350 13 C 0.072 3.928 14 C -0.098 4.098 15 C -0.115 4.115 16 S -0.123 6.123 17 C -0.519 4.519 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.869 5.869 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.114 4.114 26 C -0.031 4.031 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.268 0.732 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 24.991 -1.919 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.074 5.074 3 N -0.074 5.074 4 N -0.124 5.124 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.068 4.068 8 C -0.095 4.095 9 H 0.136 0.864 10 C 0.311 3.689 11 O -0.398 6.398 12 O -0.266 6.266 13 C -0.002 4.002 14 C -0.136 4.136 15 C -0.264 4.264 16 S 0.105 5.895 17 C -0.667 4.667 18 H 0.092 0.908 19 C -0.138 4.138 20 N -0.504 5.504 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.152 4.152 26 C -0.070 4.070 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.614 26.604 -1.571 28.687 hybrid contribution -2.125 -2.600 -0.756 3.442 sum -12.739 24.004 -2.327 27.274 Atomic orbital electron populations 1.22323 0.72583 1.06156 1.05260 1.46831 1.09255 1.04495 1.46859 1.78606 0.96138 1.11186 1.21425 1.74819 1.09553 1.11890 1.16187 1.21759 0.94993 0.91437 1.07653 1.21653 0.91316 0.91974 1.10343 1.19959 0.97310 0.85088 1.04482 1.21011 0.97029 0.87256 1.04159 0.86378 1.23328 0.82122 0.89160 0.74332 1.90676 1.25649 1.82145 1.41329 1.86469 1.44182 1.18614 1.77349 1.23313 0.99543 0.75662 1.01731 1.21289 0.96691 0.92257 1.03396 1.23182 1.03881 0.96045 1.03247 1.84661 1.18498 1.01332 1.84995 1.22693 1.03414 0.90787 1.49840 0.90846 1.25019 0.94758 0.99341 0.94638 1.70014 1.08545 1.29948 1.41918 0.86147 0.79119 0.81735 0.78423 1.20236 1.20716 1.19677 1.21695 0.96841 0.96813 0.99818 1.19973 0.92553 0.90763 1.03706 0.88814 0.87796 0.88111 0.88303 0.89150 0.91112 0.91057 0.90258 0.90299 0.91763 0.91748 0.92221 0.88395 0.90518 0.89155 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 11.27 59.84 0.67 0.93 16 2 N -0.28 -2.31 3.73 -64.00 -0.24 -2.55 16 3 N -0.10 -1.09 13.19 60.35 0.80 -0.29 16 4 N -0.26 -3.18 12.40 33.16 0.41 -2.76 16 5 C -0.02 -0.17 7.11 -83.12 -0.59 -0.77 16 6 C -0.02 -0.15 6.76 -82.49 -0.56 -0.71 16 7 C -0.03 -0.19 4.68 -27.74 -0.13 -0.32 16 8 C -0.07 -0.54 2.60 -91.49 -0.24 -0.78 16 9 H 0.12 0.71 8.12 -51.93 -0.42 0.28 16 10 C 0.47 4.91 7.25 36.00 0.26 5.17 16 11 O -0.51 -6.60 15.57 -18.75 -0.29 -6.89 16 12 O -0.35 -4.12 9.94 -39.26 -0.39 -4.51 16 13 C 0.07 0.94 5.47 37.16 0.20 1.15 16 14 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 15 C -0.11 -2.19 5.67 37.16 0.21 -1.98 16 16 S -0.12 -3.11 21.44 -107.50 -2.30 -5.42 16 17 C -0.52 -14.56 9.50 30.94 0.29 -14.27 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 20 N -0.87 -25.49 13.22 55.49 0.73 -24.76 16 21 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.11 -0.73 5.19 -26.43 -0.14 -0.87 16 26 C -0.03 -0.21 6.30 -27.70 -0.17 -0.39 16 27 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.15 7.96 -51.93 -0.41 -0.26 16 30 H 0.10 0.68 7.78 -51.93 -0.40 0.28 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 37 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.10 0.60 7.87 -51.93 -0.41 0.19 16 40 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -35.00 368.76 -7.44 -42.45 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -6.26 Total: -4.40 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.43 Total: -12.57 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 1.70 Total: -30.36 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.68 Total: -11.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.30 Total: -5.42 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.00 -7.44 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811342991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.642 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds